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"GGAGA":28100, "GGAGT":15052, "GGAGC":10674, "GGAGG":24668, "GGTAA":14411, "GGTAT":12530, "GGTAC":8400, "GGTAG":16877, "GGTTA":10326, "GGTTT":17850, "GGTTC":9688, "GGTTG":14041, "GGTCA":50472, "GGTCT":12267, "GGTCC":6883, "GGTCG":11187, "GGTGA":14342, "GGTGT":13110, "GGTGC":12717, "GGTGG":23604, "GGCAA":11159, "GGCAT":11252, "GGCAC":7617, "GGCAG":16110, "GGCTA":10650, "GGCTT":14301, "GGCTC":12693, "GGCTG":17212, "GGCCA":10505, "GGCCT":11589, "GGCCC":10447, "GGCCG":10901, "GGCGA":11279, "GGCGT":6966, "GGCGC":8964, "GGCGG":14398, "GGGAA":14610, "GGGAT":14512, "GGGAC":9959, "GGGAG":18736, "GGGTA":15130, "GGGTT":17980, "GGGTC":10049, "GGGTG":17692, "GGGCA":11833, "GGGCT":16224, "GGGCC":10075, "GGGCG":9968, "GGGGA":17409, "GGGGT":20859, "GGGGC":11831, "GGGGG":291887 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 303992, "total_bases": 18543512, "q20_bases": 17608138, "q30_bases": 16344067, "total_cycles": 61, "quality_curves": { 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"mean":[39.4423,39.3244,39.3189,39.1272,39.2213,39.2707,39.3168,39.2949,39.323,39.3493,39.3225,39.342,39.2189,39.3535,39.3367,39.3295,39.3622,39.3,39.3496,38.2205,38.645,38.7152,39.1765,39.2599,38.4586,39.175,39.181,38.0437,38.9852,37.2653,38.0133,38.2525,38.6529,37.8,36.854,36.5919,36.7972,36.461,36.9912,36.5469,37.2476,36.7203,37.8064,36.2313,37.6309,37.0062,35.2065,36.3535,35.3689,36.6801,35.064,36.1649,35.1357,33.7519,34.384,33.8738,33.585,34.2395,33.7321,32.9131,33.2265] }, "content_curves": { 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"GC":[0.471352,0.499664,0.452798,0.456088,0.476509,0.468253,0.472493,0.474277,0.469262,0.46959,0.483309,0.470561,0.477672,0.485754,0.47896,0.474856,0.482403,0.478207,0.47872,0.483254,0.478921,0.473797,0.48911,0.478872,0.476422,0.481508,0.479467,0.47365,0.481219,0.478327,0.474996,0.485614,0.481163,0.472064,0.477404,0.477069,0.460951,0.477601,0.475505,0.474708,0.48184,0.474747,0.470572,0.480471,0.467462,0.470256,0.478147,0.468501,0.466837,0.469285,0.466259,0.46165,0.478193,0.461922,0.462106,0.468354,0.468608,0.462163,0.466721,0.465854,0.466242,0.471394,0.451814,0.465114,0.463908,0.463371,0.467706,0.478445,0.464932,0.456719,0.471605,0.464234,0.461768,0.462934,0.454159,0.470615,0.456585,0.455461,0.466224,0.480725,0.445719,0.470477,0.474265,0.46539,0.463165,0.498954,0.489588,0.486942,0.452197,0.515888,0.487549] }, "kmer_count": { "AAAAA":20588, "AAAAT":17125, "AAAAC":10577, "AAAAG":13336, "AAATA":14705, "AAATT":18789, "AAATC":16418, "AAATG":14376, "AAACA":12100, "AAACT":12439, 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"CTGAG":7047, "CTGTA":7422, "CTGTT":10483, "CTGTC":5010, "CTGTG":6639, "CTGCA":11666, "CTGCT":16119, "CTGCC":10300, "CTGCG":6546, "CTGGA":10222, "CTGGT":10621, "CTGGC":9069, "CTGGG":10016, "CCAAA":16471, "CCAAT":12433, "CCAAC":12608, "CCAAG":10967, "CCATA":9866, "CCATT":15406, "CCATC":11089, "CCATG":9996, "CCACA":13607, "CCACT":9139, "CCACC":18829, "CCACG":6449, "CCAGA":11124, "CCAGT":8739, "CCAGC":13956, "CCAGG":10504, "CCTAA":11150, "CCTAT":11789, "CCTAC":10797, "CCTAG":7471, "CCTTA":7032, "CCTTT":12287, "CCTTC":14611, "CCTTG":11706, "CCTCA":14491, "CCTCT":11288, "CCTCC":21850, "CCTCG":7653, "CCTGA":11042, "CCTGT":8823, "CCTGC":16079, "CCTGG":9620, "CCCAA":15470, "CCCAT":12158, "CCCAC":14500, "CCCAG":11135, "CCCTA":14305, "CCCTT":12004, "CCCTC":14958, "CCCTG":11569, "CCCCA":15710, "CCCCT":15260, "CCCCC":11325, "CCCCG":7442, "CCCGA":6277, "CCCGT":5484, "CCCGC":7321, "CCCGG":6747, "CCGAA":6049, "CCGAT":6702, "CCGAC":5583, "CCGAG":7208, "CCGTA":6721, "CCGTT":5233, "CCGTC":5645, 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"CGGGC":6836, "CGGGG":6827, "GAAAA":12916, "GAAAT":16254, "GAAAC":7945, "GAAAG":10134, "GAATA":12885, "GAATT":11303, "GAATC":9654, "GAATG":11086, "GAACA":9799, "GAACT":9084, "GAACC":8524, "GAACG":5110, "GAAGA":17252, "GAAGT":10814, "GAAGC":11023, "GAAGG":13169, "GATAA":11847, "GATAT":8881, "GATAC":6018, "GATAG":8348, "GATTA":10538, "GATTT":16126, "GATTC":9228, "GATTG":7950, "GATCA":12150, "GATCT":9679, "GATCC":8830, "GATCG":7297, "GATGA":13892, "GATGT":11282, "GATGC":7440, "GATGG":9984, "GACAA":8206, "GACAT":8888, "GACAC":4814, "GACAG":4993, "GACTA":6621, "GACTT":9628, "GACTC":6907, "GACTG":5853, "GACCA":7585, "GACCT":9691, "GACCC":7885, "GACCG":6759, "GACGA":7116, "GACGT":5884, "GACGC":4477, "GACGG":5149, "GAGAA":14901, "GAGAT":10573, "GAGAC":7545, "GAGAG":9082, "GAGTA":7021, "GAGTT":8278, "GAGTC":6837, "GAGTG":5998, "GAGCA":10468, "GAGCT":9478, "GAGCC":9223, "GAGCG":5396, "GAGGA":15880, "GAGGT":9611, "GAGGC":10167, "GAGGG":12594, "GTAAA":11269, "GTAAT":11529, "GTAAC":7147, "GTAAG":7932, "GTATA":6740, "GTATT":9881, "GTATC":5954, "GTATG":8434, "GTACA":10171, "GTACT":7129, "GTACC":6551, "GTACG":5148, "GTAGA":10621, "GTAGT":8192, "GTAGC":10361, "GTAGG":10987, "GTTAA":7956, "GTTAT":7313, "GTTAC":7168, "GTTAG":7054, "GTTTA":10372, "GTTTT":9625, "GTTTC":7705, "GTTTG":11975, "GTTCA":9357, "GTTCT":8457, "GTTCC":8203, "GTTCG":4402, "GTTGA":10270, "GTTGT":9904, "GTTGC":6192, "GTTGG":11572, "GTCAA":7254, "GTCAT":6419, "GTCAC":4905, "GTCAG":5622, "GTCTA":5632, "GTCTT":6379, "GTCTC":7730, "GTCTG":7755, "GTCCA":8246, "GTCCT":10279, "GTCCC":7690, "GTCCG":5103, "GTCGA":9074, "GTCGT":6244, "GTCGC":5654, "GTCGG":5052, "GTGAA":10712, "GTGAT":10872, "GTGAC":4241, "GTGAG":8813, "GTGTA":6967, "GTGTT":8198, "GTGTC":4109, "GTGTG":7979, "GTGCA":7833, "GTGCT":7006, "GTGCC":5778, "GTGCG":4165, "GTGGA":10468, "GTGGT":11623, "GTGGC":7473, "GTGGG":12443, "GCAAA":9242, "GCAAT":8085, "GCAAC":6446, "GCAAG":7309, "GCATA":8264, "GCATT":10783, "GCATC":8023, "GCATG":9207, "GCACA":6224, "GCACT":4899, "GCACC":11271, "GCACG":5937, "GCAGA":8387, "GCAGT":7537, "GCAGC":13851, "GCAGG":15015, "GCTAA":7353, "GCTAT":7735, "GCTAC":10685, "GCTAG":6563, "GCTTA":8143, "GCTTT":9729, "GCTTC":11072, "GCTTG":8597, "GCTCA":8685, "GCTCT":8162, "GCTCC":8576, "GCTCG":9379, "GCTGA":7923, "GCTGT":8469, "GCTGC":12763, "GCTGG":12320, "GCCAA":8874, "GCCAT":7740, "GCCAC":8085, "GCCAG":9163, "GCCTA":6179, "GCCTT":9020, "GCCTC":10773, "GCCTG":9769, "GCCCA":9759, "GCCCT":11674, "GCCCC":9904, "GCCCG":7252, "GCCGA":7483, "GCCGT":6573, "GCCGC":9376, "GCCGG":8060, "GCGAA":5088, "GCGAT":5619, "GCGAC":5861, "GCGAG":5282, "GCGTA":2547, "GCGTT":4365, "GCGTC":4538, "GCGTG":4563, "GCGCA":5634, "GCGCT":5179, "GCGCC":6603, "GCGCG":6851, "GCGGA":6358, "GCGGT":8779, "GCGGC":8913, "GCGGG":6783, "GGAAA":11596, "GGAAT":11700, "GGAAC":7746, "GGAAG":12990, "GGATA":9441, "GGATT":11416, "GGATC":8473, "GGATG":11033, "GGACA":8993, "GGACT":11133, "GGACC":5170, "GGACG":5973, "GGAGA":12955, "GGAGT":11529, "GGAGC":8018, "GGAGG":18044, "GGTAA":10898, "GGTAT":9492, "GGTAC":6453, "GGTAG":11130, "GGTTA":7466, "GGTTT":14258, "GGTTC":7670, "GGTTG":11167, "GGTCA":8432, "GGTCT":9486, "GGTCC":5358, "GGTCG":8193, "GGTGA":10240, "GGTGT":9367, "GGTGC":9566, "GGTGG":16830, "GGCAA":7673, "GGCAT":8547, "GGCAC":5776, "GGCAG":9928, "GGCTA":7453, "GGCTT":10758, "GGCTC":9650, "GGCTG":13238, "GGCCA":7280, "GGCCT":8945, "GGCCC":8223, "GGCCG":8054, "GGCGA":7766, "GGCGT":5215, "GGCGC":6428, "GGCGG":10543, "GGGAA":10094, "GGGAT":10751, "GGGAC":7327, "GGGAG":11887, "GGGTA":11380, "GGGTT":14359, "GGGTC":7640, "GGGTG":12085, "GGGCA":8373, "GGGCT":12094, "GGGCC":7695, "GGGCG":7270, "GGGGA":12148, "GGGGT":14160, "GGGGC":8974, "GGGGG":10283 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-LC3_S57_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-LC3_S57_R2_001.fastq.gz -o AM-AL-LC3.trim.R1.fastq.gz -O AM-AL-LC3.trim.R2.fastq.gz -m --merged_out AM-AL-LC3.trim.merged.fastq.gz " }