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"overrepresented_sequences": { } }, "merged_and_filtered": { "total_reads": 2880, "total_bases": 122621, "q20_bases": 121571, "q30_bases": 115536, "total_cycles": 91, "quality_curves": { "A":[39.1158,38.4552,39.0294,38.4,37.9394,38.9091,38.687,39.0559,38.958,38.5721,39,39.6935,39.354,39.1943,39.014,39.5757,39.2506,39.4691,39.5694,39.8581,39.6184,39.1388,38.9545,39.3362,39.3745,38.038,38.2593,37.9082,38.833,38.8135,38.7267,38.9805,39.2048,39.2372,38.7836,38.816,39.0753,38.1702,38.1894,38.6188,37.631,38.2967,38.2585,38.4242,38.9867,39.6,39.0631,37.8824,39.0707,39.6098,38.5,39.5676,38.9425,38.3333,38.8824,39.2667,38.9677,39.2727,38.963,36.1379,40,39.5556,40,40,39.36,40,39.5333,40,37.1429,39.2381,40,37.5385,38.8571,38,39.1111,40,40,40,38,38.8333,38.5455,40,40,40,36,39,40,40,40,40,40], 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"CCTAG":13, "CCTTA":16, "CCTTT":27, "CCTTC":88, "CCTTG":19, "CCTCA":82, "CCTCT":67, "CCTCC":4461, "CCTCG":15, "CCTGA":105, "CCTGT":12, "CCTGC":42, "CCTGG":46, "CCCAA":138, "CCCAT":6, "CCCAC":85, "CCCAG":32, "CCCTA":128, "CCCTT":72, "CCCTC":48, "CCCTG":63, "CCCCA":125, "CCCCT":98, "CCCCC":26, "CCCCG":24, "CCCGA":26, "CCCGT":3, "CCCGC":30, "CCCGG":24, "CCGAA":31, "CCGAT":99, "CCGAC":19, "CCGAG":27, "CCGTA":11, "CCGTT":1427, "CCGTC":21, "CCGTG":6, "CCGCA":11, "CCGCT":38, "CCGCC":56, "CCGCG":8, "CCGGA":29, "CCGGT":20, "CCGGC":27, "CCGGG":24, "CGAAA":27, "CGAAT":11, "CGAAC":12, "CGAAG":54, "CGATA":9, "CGATT":44, "CGATC":115, "CGATG":15, "CGACA":6, "CGACT":14, "CGACC":15, "CGACG":40, "CGAGA":59, "CGAGT":12, "CGAGC":13, "CGAGG":9, "CGTAA":10, "CGTAT":6, "CGTAC":7, "CGTAG":28, "CGTTA":97, "CGTTT":46, "CGTTC":12, "CGTTG":1527, "CGTCA":14, "CGTCT":83, "CGTCC":16, "CGTCG":292, "CGTGA":55, "CGTGT":329, "CGTGC":15, "CGTGG":36, "CGCAA":48, "CGCAT":38, "CGCAC":13, "CGCAG":24, "CGCTA":5, "CGCTT":14, "CGCTC":33, "CGCTG":74, "CGCCA":31, "CGCCT":38, "CGCCC":33, "CGCCG":36, "CGCGA":11, "CGCGT":26, "CGCGC":10, "CGCGG":19, "CGGAA":640, "CGGAT":49, "CGGAC":13, "CGGAG":86, "CGGTA":47, "CGGTT":18, "CGGTC":56, "CGGTG":37, "CGGCA":18, "CGGCT":20, "CGGCC":28, "CGGCG":24, "CGGGA":46, "CGGGT":30, "CGGGC":51, "CGGGG":20, "GAAAA":60, "GAAAT":34, "GAAAC":33, "GAAAG":436, "GAATA":121, "GAATT":39, "GAATC":23, "GAATG":125, "GAACA":21, "GAACT":68, "GAACC":24, "GAACG":19, "GAAGA":600, "GAAGT":9, "GAAGC":52, "GAAGG":45, "GATAA":19, "GATAT":79, "GATAC":140, "GATAG":38, "GATTA":140, "GATTT":48, "GATTC":82, "GATTG":26, "GATCA":81, "GATCT":79, "GATCC":18, "GATCG":587, "GATGA":49, "GATGT":3, "GATGC":17, "GATGG":41, "GACAA":8, "GACAT":19, "GACAC":3, "GACAG":15, "GACTA":5, "GACTT":18, "GACTC":25, "GACTG":8, "GACCA":83, "GACCT":10, "GACCC":25, "GACCG":12, "GACGA":22, "GACGT":85, "GACGC":77, "GACGG":47, "GAGAA":53, "GAGAT":1545, "GAGAC":11, "GAGAG":2818, "GAGTA":23, "GAGTT":155, "GAGTC":23, "GAGTG":81, "GAGCA":15, "GAGCT":57, "GAGCC":24, "GAGCG":393, "GAGGA":175, "GAGGT":86, "GAGGC":29, "GAGGG":97, "GTAAA":14, "GTAAT":22, "GTAAC":4, "GTAAG":12, "GTATA":10, "GTATT":9, "GTATC":20, "GTATG":13, "GTACA":4, "GTACT":10, "GTACC":54, "GTACG":10, "GTAGA":63, "GTAGT":11, "GTAGC":14, "GTAGG":402, "GTTAA":8, "GTTAT":12, "GTTAC":127, "GTTAG":158, "GTTTA":50, "GTTTT":21, "GTTTC":15, "GTTTG":18, "GTTCA":51, "GTTCT":15, "GTTCC":15, "GTTCG":23, "GTTGA":1510, "GTTGT":4363, "GTTGC":11, "GTTGG":69, "GTCAA":18, "GTCAT":33, "GTCAC":14, "GTCAG":5, "GTCTA":48, "GTCTT":24, "GTCTC":14, "GTCTG":96, "GTCCA":18, "GTCCT":22, "GTCCC":37, "GTCCG":10, "GTCGA":17, "GTCGT":292, "GTCGC":20, "GTCGG":82, "GTGAA":19, "GTGAT":16, "GTGAC":17, "GTGAG":89, "GTGTA":271, "GTGTT":17, "GTGTC":15, "GTGTG":189, "GTGCA":6, "GTGCT":53, "GTGCC":11, "GTGCG":14, "GTGGA":46, "GTGGT":26, "GTGGC":21, "GTGGG":88, "GCAAA":75, "GCAAT":12, "GCAAC":7, "GCAAG":21, "GCATA":13, "GCATT":40, "GCATC":5, "GCATG":18, "GCACA":22, "GCACT":17, "GCACC":22, "GCACG":16, "GCAGA":26, "GCAGT":15, "GCAGC":24, "GCAGG":39, "GCTAA":21, "GCTAT":50, "GCTAC":52, "GCTAG":11, "GCTTA":59, "GCTTT":23, "GCTTC":11, "GCTTG":10, "GCTCA":24, "GCTCT":70, "GCTCC":36, "GCTCG":78, "GCTGA":78, "GCTGT":33, "GCTGC":144, "GCTGG":39, "GCCAA":179, "GCCAT":19, "GCCAC":19, "GCCAG":33, "GCCTA":7, "GCCTT":10, "GCCTC":28, "GCCTG":33, "GCCCA":27, "GCCCT":67, "GCCCC":111, "GCCCG":28, "GCCGA":23, "GCCGT":26, "GCCGC":39, "GCCGG":22, "GCGAA":17, "GCGAT":66, "GCGAC":9, "GCGAG":16, "GCGTA":15, "GCGTT":31, "GCGTC":319, "GCGTG":108, "GCGCA":15, "GCGCT":13, "GCGCC":14, "GCGCG":22, "GCGGA":17, "GCGGT":27, "GCGGC":35, "GCGGG":28, "GGAAA":555, "GGAAT":129, "GGAAC":71, "GGAAG":563, "GGATA":87, "GGATT":139, "GGATC":58, "GGATG":5, "GGACA":9, "GGACT":8, "GGACC":10, "GGACG":20, "GGAGA":133, "GGAGT":144, "GGAGC":29, "GGAGG":67, "GGTAA":9, "GGTAT":15, "GGTAC":4, "GGTAG":60, "GGTTA":20, "GGTTT":18, "GGTTC":23, "GGTTG":146, "GGTCA":19, "GGTCT":61, "GGTCC":52, "GGTCG":61, "GGTGA":25, "GGTGT":42, "GGTGC":11, "GGTGG":33, "GGCAA":8, "GGCAT":20, "GGCAC":23, "GGCAG":34, "GGCTA":62, "GGCTT":14, "GGCTC":44, "GGCTG":32, "GGCCA":27, "GGCCT":17, "GGCCC":102, "GGCCG":26, "GGCGA":27, "GGCGT":31, "GGCGC":24, "GGCGG":22, "GGGAA":441, "GGGAT":73, "GGGAC":10, "GGGAG":37, "GGGTA":15, "GGGTT":41, "GGGTC":36, "GGGTG":13, "GGGCA":30, "GGGCT":52, "GGGCC":34, "GGGCG":22, "GGGGA":34, "GGGGT":20, "GGGGC":35, "GGGGG":47 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-LC2_S109_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-LC2_S109_R2_001.fastq.gz -o AM-AL-LC2.trim.R1.fastq.gz -O AM-AL-LC2.trim.R2.fastq.gz -m --merged_out AM-AL-LC2.trim.merged.fastq.gz " }