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"CGGAC":28519, "CGGAG":64880, "CGGTA":33602, "CGGTT":46828, "CGGTC":45933, "CGGTG":63363, "CGGCA":68877, "CGGCT":63874, "CGGCC":72527, "CGGCG":90738, "CGGGA":46113, "CGGGT":45131, "CGGGC":53891, "CGGGG":53775, "GAAAA":80101, "GAAAT":51332, "GAAAC":50921, "GAAAG":64280, "GAATA":33270, "GAATT":39739, "GAATC":38642, "GAATG":34688, "GAACA":52528, "GAACT":292167, "GAACC":56173, "GAACG":36417, "GAAGA":723436, "GAAGT":39282, "GAAGC":67540, "GAAGG":64962, "GATAA":35107, "GATAT":30671, "GATAC":24013, "GATAG":47225, "GATTA":28454, "GATTT":57804, "GATTC":43168, "GATTG":41996, "GATCA":50951, "GATCT":44387, "GATCC":45511, "GATCG":732162, "GATGA":69813, "GATGT":39405, "GATGC":46815, "GATGG":62898, "GACAA":44469, "GACAT":32491, "GACAC":26399, "GACAG":43885, "GACTA":19806, "GACTT":39574, "GACTC":25987, "GACTG":29162, "GACCA":56398, "GACCT":41830, "GACCC":49558, "GACCG":46625, "GACGA":53983, "GACGT":25096, "GACGC":36882, "GACGG":43181, "GAGAA":67775, "GAGAT":194964, "GAGAC":40781, "GAGAG":49757, "GAGTA":19844, "GAGTT":35597, "GAGTC":22769, "GAGTG":21655, "GAGCA":590461, "GAGCT":34946, "GAGCC":47013, "GAGCG":37383, "GAGGA":90135, "GAGGT":45316, "GAGGC":55793, "GAGGG":48474, "GTAAA":22951, "GTAAT":20038, "GTAAC":20651, "GTAAG":20700, "GTATA":13013, "GTATT":25311, "GTATC":37732, "GTATG":19752, "GTACA":19349, "GTACT":16812, "GTACC":23653, "GTACG":16942, "GTAGA":86417, "GTAGT":19496, "GTAGC":27182, "GTAGG":25620, "GTTAA":15730, "GTTAT":22867, "GTTAC":22995, "GTTAG":30766, "GTTTA":26442, "GTTTT":66846, "GTTTC":54661, "GTTTG":60823, "GTTCA":41842, "GTTCT":47563, "GTTCC":60684, "GTTCG":40625, "GTTGA":52015, "GTTGT":54468, "GTTGC":48634, "GTTGG":79781, "GTCAA":36993, "GTCAT":32654, "GTCAC":120711, "GTCAG":40030, "GTCTA":21760, "GTCTT":46286, "GTCTC":43196, "GTCTG":383755, "GTCCA":42721, "GTCCT":41727, "GTCCC":35159, "GTCCG":29902, "GTCGA":46572, "GTCGT":38392, "GTCGC":41453, "GTCGG":45665, "GTGAA":45378, "GTGAT":41048, "GTGAC":25660, "GTGAG":37974, "GTGTA":15824, "GTGTT":40259, "GTGTC":22953, "GTGTG":31981, "GTGCA":29632, "GTGCT":41058, "GTGCC":40453, "GTGCG":32523, "GTGGA":51988, "GTGGT":71658, "GTGGC":56420, "GTGGG":62488, "GCAAA":50427, "GCAAT":34566, "GCAAC":48285, "GCAAG":56692, "GCATA":24624, "GCATT":34485, "GCATC":44019, "GCATG":33611, "GCACA":524478, "GCACT":22311, "GCACC":64670, "GCACG":34224, "GCAGA":109321, "GCAGT":30799, "GCAGC":70624, "GCAGG":85245, "GCTAA":18434, "GCTAT":24383, "GCTAC":29060, "GCTAG":32093, "GCTTA":26200, "GCTTT":55796, "GCTTC":76343, "GCTTG":57035, "GCTCA":42528, "GCTCT":39336, "GCTCC":60928, "GCTCG":48761, "GCTGA":54150, "GCTGT":44490, "GCTGC":72936, "GCTGG":95695, "GCCAA":71927, "GCCAT":50415, "GCCAC":65027, "GCCAG":92557, "GCCTA":29766, "GCCTT":55224, "GCCTC":63465, "GCCTG":73731, "GCCCA":75684, "GCCCT":52794, "GCCCC":64456, "GCCCG":58462, "GCCGA":74836, "GCCGT":51382, "GCCGC":90975, "GCCGG":79909, "GCGAA":48611, "GCGAT":43898, "GCGAC":43012, "GCGAG":50528, "GCGTA":21157, "GCGTT":34604, "GCGTC":34337, "GCGTG":34101, "GCGCA":47218, "GCGCT":44341, "GCGCC":69486, "GCGCG":50611, "GCGGA":54112, "GCGGT":58585, "GCGGC":83744, "GCGGG":64510, "GGAAA":65700, "GGAAT":42959, "GGAAC":52667, "GGAAG":692031, "GGATA":39159, "GGATT":49187, "GGATC":41874, "GGATG":56424, "GGACA":38134, "GGACT":29316, "GGACC":34617, "GGACG":37042, "GGAGA":132786, "GGAGT":30990, "GGAGC":51791, "GGAGG":93304, "GGTAA":25469, "GGTAT":43426, "GGTAC":22120, "GGTAG":55288, "GGTTA":28522, "GGTTT":76487, "GGTTC":52418, "GGTTG":86705, "GGTCA":44487, "GGTCT":49944, "GGTCC":35358, "GGTCG":48094, "GGTGA":64155, "GGTGT":48376, "GGTGC":55649, "GGTGG":106647, "GGCAA":59379, "GGCAT":44220, "GGCAC":39547, "GGCAG":84927, "GGCTA":35283, "GGCTT":67611, "GGCTC":47311, "GGCTG":78972, "GGCCA":68405, "GGCCT":52124, "GGCCC":47301, "GGCCG":68947, "GGCGA":75876, "GGCGT":45161, "GGCGC":65928, "GGCGG":103473, "GGGAA":50291, "GGGAT":44404, "GGGAC":31292, "GGGAG":66665, "GGGTA":28750, "GGGTT":75046, "GGGTC":43311, "GGGTG":66933, "GGGCA":58029, "GGGCT":53737, "GGGCC":44837, "GGGCG":62423, "GGGGA":55926, "GGGGT":65641, "GGGGC":52796, "GGGGG":163763 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1049709, "total_bases": 64032249, "q20_bases": 61774179, "q30_bases": 58755995, "total_cycles": 61, "quality_curves": { "A":[39.4452,39.1943,39.2517,39.1286,39.1924,39.2495,39.2053,39.0463,39.2036,39.2007,39.1956,39.1692,39.1968,39.2064,39.1864,39.1692,39.1816,39.1719,39.1978,39.199,38.3178,39.1471,39.1803,39.2117,38.4212,39.1472,39.1804,38.2825,39.0318,38.5669,39.1447,39.1453,39.0997,38.9867,39.1001,39.0648,39.066,39.0239,38.9652,38.8719,38.7397,38.5973,38.4855,38.2927,38.0051,37.6202,37.0143,36.587,36.8743,36.4444,36.0888,35.7234,35.4502,34.8458,34.7261,34.3086,34.0577,33.813,33.5282,33.0724,32.9548], 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"CTTGA":39848, "CTTGT":40672, "CTTGC":38861, "CTTGG":50205, "CTCAA":38383, "CTCAT":29430, "CTCAC":29944, "CTCAG":29407, "CTCTA":18473, "CTCTT":47032, "CTCTC":39701, "CTCTG":37753, "CTCCA":56938, "CTCCT":90788, "CTCCC":55171, "CTCCG":45676, "CTCGA":36103, "CTCGT":31158, "CTCGC":36661, "CTCGG":38520, "CTGAA":34599, "CTGAT":32856, "CTGAC":26843, "CTGAG":27114, "CTGTA":14055, "CTGTT":47407, "CTGTC":26820, "CTGTG":26768, "CTGCA":39366, "CTGCT":77673, "CTGCC":60019, "CTGCG":36777, "CTGGA":48532, "CTGGT":52416, "CTGGC":52058, "CTGGG":52557, "CCAAA":68648, "CCAAT":35301, "CCAAC":77862, "CCAAG":48057, "CCATA":25513, "CCATT":35249, "CCATC":53015, "CCATG":36778, "CCACA":54509, "CCACT":28100, "CCACC":110012, "CCACG":38572, "CCAGA":47522, "CCAGT":36688, "CCAGC":79000, "CCAGG":50554, "CCTAA":16887, "CCTAT":19959, "CCTAC":24131, "CCTAG":13734, "CCTTA":16355, "CCTTT":53709, "CCTTC":65553, "CCTTG":50233, "CCTCA":47011, "CCTCT":45717, "CCTCC":96630, "CCTCG":47251, "CCTGA":37210, "CCTGT":43014, "CCTGC":84349, "CCTGG":53135, "CCCAA":72342, "CCCAT":38959, "CCCAC":66358, "CCCAG":57528, "CCCTA":20715, "CCCTT":40844, "CCCTC":53746, "CCCTG":45717, "CCCCA":73042, "CCCCT":48097, "CCCCC":52154, "CCCCG":49468, "CCCGA":38981, "CCCGT":28389, "CCCGC":58589, "CCCGG":44948, "CCGAA":39808, "CCGAT":37487, "CCGAC":38375, "CCGAG":37812, "CCGTA":19013, "CCGTT":30568, "CCGTC":37468, "CCGTG":28099, "CCGCA":42691, "CCGCT":41896, "CCGCC":92093, "CCGCG":42522, "CCGGA":38560, "CCGGT":41255, "CCGGC":61736, "CCGGG":41437, "CGAAA":37941, "CGAAT":25029, "CGAAC":30819, "CGAAG":41456, "CGATA":22603, "CGATT":30577, "CGATC":36608, "CGATG":43627, "CGACA":28947, "CGACT":27782, "CGACC":42595, "CGACG":38710, "CGAGA":33584, "CGAGT":19314, "CGAGC":33128, "CGAGG":39182, "CGTAA":17230, "CGTAT":13217, "CGTAC":12721, "CGTAG":16889, "CGTTA":11108, "CGTTT":28912, "CGTTC":30623, "CGTTG":31418, "CGTCA":25773, "CGTCT":27913, "CGTCC":30851, "CGTCG":37185, "CGTGA":24317, "CGTGT":15540, "CGTGC":22668, "CGTGG":32700, "CGCAA":29475, "CGCAT":22102, "CGCAC":27219, "CGCAG":33151, "CGCTA":13308, "CGCTT":34852, "CGCTC":32590, "CGCTG":41414, "CGCCA":55809, "CGCCT":55440, "CGCCC":56616, "CGCCG":68423, "CGCGA":29724, "CGCGT":19512, "CGCGC":37413, "CGCGG":40639, "CGGAA":35341, "CGGAT":29183, "CGGAC":20725, "CGGAG":36500, "CGGTA":20215, "CGGTT":37678, "CGGTC":34624, "CGGTG":46684, "CGGCA":44111, "CGGCT":49291, "CGGCC":52621, "CGGCG":63781, "CGGGA":31884, "CGGGT":34414, "CGGGC":38621, "CGGGG":40192, "GAAAA":63268, "GAAAT":41330, "GAAAC":40597, "GAAAG":41798, "GAATA":24242, "GAATT":32808, "GAATC":30731, "GAATG":27539, "GAACA":36967, "GAACT":30614, "GAACC":43732, "GAACG":27269, "GAAGA":60150, "GAAGT":29723, "GAAGC":51348, "GAAGG":49045, "GATAA":26802, "GATAT":24773, "GATAC":18460, "GATAG":22424, "GATTA":20686, "GATTT":48622, "GATTC":35040, "GATTG":33301, "GATCA":36285, "GATCT":35948, "GATCC":35545, "GATCG":33464, "GATGA":52954, "GATGT":30666, "GATGC":34537, "GATGG":48968, "GACAA":33333, "GACAT":25061, "GACAC":19935, "GACAG":22731, "GACTA":13038, "GACTT":32493, "GACTC":19786, "GACTG":21609, "GACCA":40227, "GACCT":32117, "GACCC":38503, "GACCG":35137, "GACGA":38884, "GACGT":18475, "GACGC":26967, "GACGG":31587, "GAGAA":51409, "GAGAT":37954, "GAGAC":31888, "GAGAG":30665, "GAGTA":13347, "GAGTT":28163, "GAGTC":17892, "GAGTG":16302, "GAGCA":38218, "GAGCT":25276, "GAGCC":35184, "GAGCG":26040, "GAGGA":67102, "GAGGT":34046, "GAGGC":41852, "GAGGG":36660, "GTAAA":17792, "GTAAT":15896, "GTAAC":15424, "GTAAG":11364, "GTATA":8837, "GTATT":20417, "GTATC":17543, "GTATG":15571, "GTACA":13355, "GTACT":12945, "GTACC":18010, "GTACG":12563, "GTAGA":19542, "GTAGT":15386, "GTAGC":20128, "GTAGG":19044, "GTTAA":11829, "GTTAT":18750, "GTTAC":18593, "GTTAG":12120, "GTTTA":18250, "GTTTT":56394, "GTTTC":44834, "GTTTG":50475, "GTTCA":30921, "GTTCT":39323, "GTTCC":48750, "GTTCG":31613, "GTTGA":39336, "GTTGT":45061, "GTTGC":38422, "GTTGG":65641, "GTCAA":26388, "GTCAT":25647, "GTCAC":20645, "GTCAG":22044, "GTCTA":14326, "GTCTT":37360, "GTCTC":36310, "GTCTG":28582, "GTCCA":31087, "GTCCT":33314, "GTCCC":27910, "GTCCG":22266, "GTCGA":32029, "GTCGT":28848, "GTCGC":30416, "GTCGG":32885, "GTGAA":31417, "GTGAT":30778, "GTGAC":18416, "GTGAG":23591, "GTGTA":9886, "GTGTT":32613, "GTGTC":17550, "GTGTG":24714, "GTGCA":20114, "GTGCT":30810, "GTGCC":30115, "GTGCG":23298, "GTGGA":36642, "GTGGT":57459, "GTGGC":42800, "GTGGG":48523, "GCAAA":36010, "GCAAT":26997, "GCAAC":36954, "GCAAG":31474, "GCATA":16189, "GCATT":27512, "GCATC":32866, "GCATG":24892, "GCACA":22980, "GCACT":16728, "GCACC":48613, "GCACG":23676, "GCAGA":35545, "GCAGT":23706, "GCAGC":52301, "GCAGG":62165, "GCTAA":12639, "GCTAT":18759, "GCTAC":21757, "GCTAG":12020, "GCTTA":16443, "GCTTT":45938, "GCTTC":62344, "GCTTG":45457, "GCTCA":30729, "GCTCT":31668, "GCTCC":48881, "GCTCG":36262, "GCTGA":38382, "GCTGT":33364, "GCTGC":55289, "GCTGG":72421, "GCCAA":50819, "GCCAT":38211, "GCCAC":49494, "GCCAG":48485, "GCCTA":18732, "GCCTT":44086, "GCCTC":50591, "GCCTG":55561, "GCCCA":52996, "GCCCT":41253, "GCCCC":49605, "GCCCG":42109, "GCCGA":50398, "GCCGT":38048, "GCCGC":66152, "GCCGG":57416, "GCGAA":32751, "GCGAT":32938, "GCGAC":31160, "GCGAG":28888, "GCGTA":12597, "GCGTT":26166, "GCGTC":24457, "GCGTG":23934, "GCGCA":29255, "GCGCT":31057, "GCGCC":49317, "GCGCG":34398, "GCGGA":36211, "GCGGT":44509, "GCGGC":59571, "GCGGG":47298, "GGAAA":48774, "GGAAT":34664, "GGAAC":40530, "GGAAG":46127, "GGATA":25932, "GGATT":40290, "GGATC":32823, "GGATG":43153, "GGACA":26055, "GGACT":22413, "GGACC":26378, "GGACG":26746, "GGAGA":57083, "GGAGT":23962, "GGAGC":38041, "GGAGG":70614, "GGTAA":18078, "GGTAT":21086, "GGTAC":16505, "GGTAG":23691, "GGTTA":18122, "GGTTT":64171, "GGTTC":42749, "GGTTG":71434, "GGTCA":30709, "GGTCT":40171, "GGTCC":27185, "GGTCG":35022, "GGTGA":44270, "GGTGT":38131, "GGTGC":41583, "GGTGG":82965, "GGCAA":40234, "GGCAT":33340, "GGCAC":28921, "GGCAG":46400, "GGCTA":22433, "GGCTT":53914, "GGCTC":37166, "GGCTG":60831, "GGCCA":43802, "GGCCT":39185, "GGCCC":35192, "GGCCG":48347, "GGCGA":51599, "GGCGT":32393, "GGCGC":44762, "GGCGG":76081, "GGGAA":35702, "GGGAT":34586, "GGGAC":23344, "GGGAG":38835, "GGGTA":17798, "GGGTT":61550, "GGGTC":33853, "GGGTG":49740, "GGGCA":38466, "GGGCT":42297, "GGGCC":32417, "GGGCG":44553, "GGGGA":39175, "GGGGT":48461, "GGGGC":39542, "GGGGG":36145 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-9C_S73_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-9C_S73_R2_001.fastq.gz -o AM-AL-9C.trim.R1.fastq.gz -O AM-AL-9C.trim.R2.fastq.gz -m --merged_out AM-AL-9C.trim.merged.fastq.gz " }