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"CTCGC":51561, "CTCGG":54000, "CTGAA":367824, "CTGAT":50112, "CTGAC":40366, "CTGAG":49781, "CTGTA":25748, "CTGTT":64603, "CTGTC":38378, "CTGTG":38253, "CTGCA":87752, "CTGCT":94820, "CTGCC":76161, "CTGCG":53655, "CTGGA":75076, "CTGGT":70995, "CTGGC":76552, "CTGGG":87425, "CCAAA":98956, "CCAAT":50948, "CCAAC":95235, "CCAAG":85405, "CCATA":42953, "CCATT":51466, "CCATC":75507, "CCATG":54649, "CCACA":73095, "CCACT":40031, "CCACC":127912, "CCACG":54297, "CCAGA":140208, "CCAGT":194909, "CCAGC":106414, "CCAGG":70471, "CCTAA":28874, "CCTAT":29639, "CCTAC":33305, "CCTAG":37830, "CCTTA":31061, "CCTTT":72990, "CCTTC":88555, "CCTTG":69837, "CCTCA":66099, "CCTCT":58917, "CCTCC":107610, "CCTCG":63655, "CCTGA":58827, "CCTGT":54663, "CCTGC":130894, "CCTGG":74191, "CCCAA":94916, "CCCAT":52775, "CCCAC":79186, "CCCAG":92366, "CCCTA":32530, "CCCTT":54582, "CCCTC":64246, "CCCTG":59952, "CCCCA":90991, "CCCCT":57130, "CCCCC":63552, "CCCCG":61919, "CCCGA":57186, "CCCGT":41012, "CCCGC":74572, "CCCGG":59410, 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"CGGAC":31723, "CGGAG":63974, "CGGTA":36537, "CGGTT":52004, "CGGTC":49483, "CGGTG":67177, "CGGCA":74075, "CGGCT":67319, "CGGCC":74188, "CGGCG":97388, "CGGGA":48154, "CGGGT":47495, "CGGGC":57125, "CGGGG":53176, "GAAAA":102980, "GAAAT":65506, "GAAAC":60644, "GAAAG":77513, "GAATA":41639, "GAATT":51648, "GAATC":48458, "GAATG":42363, "GAACA":61606, "GAACT":306061, "GAACC":63027, "GAACG":42143, "GAAGA":770452, "GAAGT":47477, "GAAGC":74592, "GAAGG":72339, "GATAA":43850, "GATAT":38748, "GATAC":28307, "GATAG":52941, "GATTA":36119, "GATTT":70815, "GATTC":51389, "GATTG":49616, "GATCA":59161, "GATCT":51873, "GATCC":50468, "GATCG":777549, "GATGA":78763, "GATGT":45711, "GATGC":53601, "GATGG":67487, "GACAA":52776, "GACAT":38189, "GACAC":29406, "GACAG":47842, "GACTA":24528, "GACTT":45382, "GACTC":29635, "GACTG":33336, "GACCA":62419, "GACCT":46496, "GACCC":50235, "GACCG":49883, "GACGA":60737, "GACGT":29603, "GACGC":40468, "GACGG":47264, "GAGAA":79658, "GAGAT":207273, "GAGAC":43570, "GAGAG":54104, "GAGTA":23029, "GAGTT":43281, "GAGTC":26335, "GAGTG":25483, "GAGCA":622307, "GAGCT":40230, "GAGCC":50827, "GAGCG":42499, "GAGGA":88402, "GAGGT":49238, "GAGGC":56259, "GAGGG":48687, "GTAAA":28629, "GTAAT":25166, "GTAAC":23543, "GTAAG":25290, "GTATA":16913, "GTATT":31838, "GTATC":27435, "GTATG":24284, "GTACA":22891, "GTACT":20014, "GTACC":25035, "GTACG":19638, "GTAGA":89930, "GTAGT":23440, "GTAGC":29629, "GTAGG":28353, "GTTAA":21343, "GTTAT":28997, "GTTAC":25501, "GTTAG":35467, "GTTTA":33617, "GTTTT":84024, "GTTTC":64552, "GTTTG":69879, "GTTCA":50703, "GTTCT":55783, "GTTCC":63161, "GTTCG":46967, "GTTGA":62204, "GTTGT":60907, "GTTGC":54512, "GTTGG":81854, "GTCAA":46163, "GTCAT":38125, "GTCAC":124603, "GTCAG":46840, "GTCTA":25921, "GTCTT":55340, "GTCTC":46468, "GTCTG":402351, "GTCCA":46185, "GTCCT":44542, "GTCCC":36324, "GTCCG":32429, "GTCGA":53347, "GTCGT":43171, "GTCGC":47443, "GTCGG":50663, "GTGAA":54089, "GTGAT":47247, "GTGAC":29566, "GTGAG":40867, "GTGTA":19636, "GTGTT":45396, "GTGTC":26802, "GTGTG":34859, "GTGCA":34038, "GTGCT":45129, "GTGCC":43270, "GTGCG":35160, "GTGGA":57275, "GTGGT":73538, "GTGGC":60403, "GTGGG":62938, "GCAAA":60827, "GCAAT":64214, "GCAAC":54487, "GCAAG":63822, "GCATA":30385, "GCATT":42044, "GCATC":52733, "GCATG":39924, "GCACA":553700, "GCACT":26632, "GCACC":65941, "GCACG":37387, "GCAGA":116129, "GCAGT":35338, "GCAGC":72495, "GCAGG":80740, "GCTAA":24187, "GCTAT":29976, "GCTAC":33313, "GCTAG":35184, "GCTTA":31228, "GCTTT":65783, "GCTTC":83082, "GCTTG":63326, "GCTCA":49360, "GCTCT":44419, "GCTCC":62429, "GCTCG":52658, "GCTGA":62657, "GCTGT":49160, "GCTGC":76190, "GCTGG":97632, "GCCAA":78827, "GCCAT":58106, "GCCAC":66265, "GCCAG":96414, "GCCTA":33970, "GCCTT":62907, "GCCTC":64223, "GCCTG":74684, "GCCCA":75765, "GCCCT":54564, "GCCCC":61800, "GCCCG":60036, "GCCGA":83003, "GCCGT":57491, "GCCGC":95257, "GCCGG":80606, "GCGAA":56576, "GCGAT":50816, "GCGAC":48601, "GCGAG":55007, "GCGTA":25041, "GCGTT":39768, "GCGTC":39890, "GCGTG":39152, "GCGCA":53169, "GCGCT":49426, "GCGCC":73723, "GCGCG":57321, "GCGGA":56938, "GCGGT":60874, "GCGGC":86788, "GCGGG":63438, "GGAAA":78797, "GGAAT":51340, "GGAAC":55816, "GGAAG":731979, "GGATA":45504, "GGATT":57951, "GGATC":46099, "GGATG":61497, "GGACA":40975, "GGACT":31843, "GGACC":36822, "GGACG":39834, "GGAGA":136607, "GGAGT":35403, "GGAGC":52234, "GGAGG":86220, "GGTAA":30556, "GGTAT":30713, "GGTAC":24721, "GGTAG":55418, "GGTTA":33300, "GGTTT":85427, "GGTTC":57858, "GGTTG":88672, "GGTCA":49670, "GGTCT":53415, "GGTCC":37916, "GGTCG":53896, "GGTGA":70567, "GGTGT":49613, "GGTGC":56849, "GGTGG":104282, "GGCAA":67658, "GGCAT":51205, "GGCAC":42357, "GGCAG":84809, "GGCTA":40556, "GGCTT":74768, "GGCTC":50558, "GGCTG":82495, "GGCCA":70446, "GGCCT":53921, "GGCCC":47748, "GGCCG":72071, "GGCGA":83247, "GGCGT":50763, "GGCGC":71210, "GGCGG":101273, "GGGAA":55726, "GGGAT":49212, "GGGAC":31917, "GGGAG":68879, "GGGTA":30566, "GGGTT":76864, "GGGTC":44664, "GGGTG":64215, "GGGCA":59506, "GGGCT":56384, "GGGCC":45786, "GGGCG":63742, "GGGGA":57053, "GGGGT":60131, "GGGGC":51997, "GGGGG":218491 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1168779, "total_bases": 71295519, "q20_bases": 68811795, "q30_bases": 65386404, "total_cycles": 61, "quality_curves": { "A":[39.345,39.2166,39.1321,39.0502,38.9279,39.1284,39.0934,38.9252,39.1493,39.1229,39.1608,39.1554,39.1622,39.1619,39.1348,39.116,39.1613,39.1522,39.1632,39.139,38.1662,39.057,39.1386,39.1424,38.1972,39.0612,39.1243,38.1181,38.8923,38.505,39.0833,39.0913,39.0456,39.0779,39.0662,38.9917,39.0304,38.2342,38.2878,38.8636,38.7827,38.7039,38.5762,38.4263,38.1847,37.7262,37.1449,36.7402,37.1641,36.7172,36.4099,36.0026,35.622,35.1167,34.9047,34.4678,34.2,33.8274,33.5304,32.8923,32.5741], 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"CCTGG":51993, "CCCAA":68904, "CCCAT":39700, "CCCAC":58167, "CCCAG":53054, "CCCTA":21037, "CCCTT":41897, "CCCTC":48413, "CCCTG":42671, "CCCCA":64648, "CCCCT":43222, "CCCCC":44501, "CCCCG":44059, "CCCGA":38340, "CCCGT":28161, "CCCGC":52829, "CCCGG":42192, "CCGAA":43404, "CCGAT":38992, "CCGAC":38373, "CCGAG":38043, "CCGTA":19842, "CCGTT":32887, "CCGTC":37333, "CCGTG":28684, "CCGCA":41852, "CCGCT":40517, "CCGCC":83760, "CCGCG":42048, "CCGGA":37384, "CCGGT":40843, "CCGGC":58280, "CCGGG":40295, "CGAAA":43659, "CGAAT":29879, "CGAAC":34412, "CGAAG":44256, "CGATA":25784, "CGATT":34961, "CGATC":40324, "CGATG":44869, "CGACA":30582, "CGACT":28594, "CGACC":43392, "CGACG":39646, "CGAGA":35777, "CGAGT":21200, "CGAGC":35047, "CGAGG":38595, "CGTAA":17587, "CGTAT":16106, "CGTAC":13547, "CGTAG":18386, "CGTTA":13197, "CGTTT":33574, "CGTTC":33112, "CGTTG":33806, "CGTCA":28477, "CGTCT":30325, "CGTCC":31367, "CGTCG":39427, "CGTGA":25448, "CGTGT":17373, "CGTGC":24596, "CGTGG":33793, "CGCAA":31178, "CGCAT":24631, "CGCAC":27311, "CGCAG":33281, "CGCTA":14863, "CGCTT":36736, "CGCTC":32969, "CGCTG":42141, "CGCCA":55211, "CGCCT":53585, "CGCCC":51552, "CGCCG":68510, "CGCGA":31346, "CGCGT":20783, "CGCGC":38807, "CGCGG":40064, "CGGAA":37314, "CGGAT":31599, "CGGAC":21538, "CGGAG":34796, "CGGTA":21422, "CGGTT":39652, "CGGTC":35406, "CGGTG":46262, "CGGCA":44890, "CGGCT":48517, "CGGCC":49946, "CGGCG":64063, "CGGGA":31758, "CGGGT":34142, "CGGGC":38327, "CGGGG":36950, "GAAAA":77536, "GAAAT":49842, "GAAAC":45658, "GAAAG":48343, "GAATA":29471, "GAATT":41174, "GAATC":36952, "GAATG":31946, "GAACA":40549, "GAACT":34916, "GAACC":45650, "GAACG":29539, "GAAGA":67072, "GAAGT":33654, "GAAGC":53494, "GAAGG":51003, "GATAA":31780, "GATAT":29908, "GATAC":20796, "GATAG":25445, "GATTA":25163, "GATTT":57288, "GATTC":39311, "GATTG":37261, "GATCA":40293, "GATCT":39613, "GATCC":37093, "GATCG":37308, "GATGA":56427, "GATGT":33635, "GATGC":37254, "GATGG":49611, "GACAA":37238, "GACAT":27670, "GACAC":20598, "GACAG":23729, "GACTA":15153, "GACTT":35299, "GACTC":21271, "GACTG":22961, "GACCA":42237, "GACCT":33057, "GACCC":36473, "GACCG":35354, "GACGA":41272, "GACGT":20362, "GACGC":27240, "GACGG":32919, "GAGAA":57752, "GAGAT":41057, "GAGAC":32124, "GAGAG":31703, "GAGTA":15096, "GAGTT":32276, "GAGTC":19224, "GAGTG":18032, "GAGCA":39913, "GAGCT":27583, "GAGCC":35791, "GAGCG":27582, "GAGGA":62715, "GAGGT":34642, "GAGGC":39470, "GAGGG":34552, "GTAAA":20882, "GTAAT":18750, "GTAAC":16478, "GTAAG":13056, "GTATA":11285, "GTATT":24735, "GTATC":20217, "GTATG":18054, "GTACA":14812, "GTACT":14353, "GTACC":17838, "GTACG":13243, "GTAGA":22307, "GTAGT":16977, "GTAGC":20194, "GTAGG":19675, "GTTAA":15329, "GTTAT":22442, "GTTAC":19270, "GTTAG":13859, "GTTTA":22271, "GTTTT":67980, "GTTTC":50039, "GTTTG":54610, "GTTCA":35127, "GTTCT":43265, "GTTCC":47959, "GTTCG":34090, "GTTGA":44584, "GTTGT":47463, "GTTGC":39974, "GTTGG":62961, "GTCAA":31133, "GTCAT":27792, "GTCAC":21897, "GTCAG":24361, "GTCTA":16575, "GTCTT":42308, "GTCTC":36994, "GTCTG":30295, "GTCCA":31639, "GTCCT":33975, "GTCCC":26949, "GTCCG":22226, "GTCGA":35106, "GTCGT":30347, "GTCGC":32420, "GTCGG":34415, "GTGAA":35830, "GTGAT":33303, "GTGAC":20192, "GTGAG":23617, "GTGTA":11901, "GTGTT":34537, "GTGTC":19234, "GTGTG":25440, "GTGCA":21531, "GTGCT":31464, "GTGCC":29873, "GTGCG":23577, "GTGGA":38116, "GTGGT":56127, "GTGGC":42576, "GTGGG":45794, "GCAAA":41036, "GCAAT":31635, "GCAAC":38943, "GCAAG":33943, "GCATA":19698, "GCATT":31429, "GCATC":36594, "GCATG":27728, "GCACA":24583, "GCACT":18490, "GCACC":46421, "GCACG":23984, "GCAGA":37642, "GCAGT":25246, "GCAGC":50198, "GCAGG":55370, "GCTAA":15303, "GCTAT":21793, "GCTAC":22872, "GCTAG":12945, "GCTTA":18644, "GCTTT":51145, "GCTTC":63292, "GCTTG":46937, "GCTCA":33334, "GCTCT":33150, "GCTCC":47109, "GCTCG":36563, "GCTGA":41275, "GCTGT":34229, "GCTGC":54163, "GCTGG":68815, "GCCAA":53036, "GCCAT":40980, "GCCAC":46738, "GCCAG":47989, "GCCTA":20572, "GCCTT":46666, "GCCTC":48256, "GCCTG":52358, "GCCCA":49808, "GCCCT":39271, "GCCCC":43999, "GCCCG":41014, "GCCGA":52680, "GCCGT":38939, "GCCGC":63889, "GCCGG":54072, "GCGAA":36681, "GCGAT":35586, "GCGAC":32837, "GCGAG":30050, "GCGTA":14154, "GCGTT":28173, "GCGTC":26814, "GCGTG":25471, "GCGCA":30854, "GCGCT":32103, "GCGCC":47995, "GCGCG":35982, "GCGGA":36355, "GCGGT":43321, "GCGGC":57688, "GCGGG":43529, "GGAAA":55236, "GGAAT":39621, "GGAAC":40336, "GGAAG":47986, "GGATA":29678, "GGATT":45218, "GGATC":33714, "GGATG":44451, "GGACA":26723, "GGACT":22937, "GGACC":26432, "GGACG":27151, "GGAGA":57532, "GGAGT":25837, "GGAGC":36433, "GGAGG":61634, "GGTAA":20325, "GGTAT":23209, "GGTAC":17124, "GGTAG":23930, "GGTTA":20516, "GGTTT":68414, "GGTTC":44440, "GGTTG":68690, "GGTCA":32187, "GGTCT":40658, "GGTCC":27433, "GGTCG":37228, "GGTGA":46295, "GGTGT":37018, "GGTGC":39034, "GGTGG":77562, "GGCAA":43464, "GGCAT":36119, "GGCAC":28733, "GGCAG":43792, "GGCTA":24418, "GGCTT":55786, "GGCTC":37353, "GGCTG":58542, "GGCCA":42824, "GGCCT":37985, "GGCCC":32928, "GGCCG":46928, "GGCGA":53426, "GGCGT":34338, "GGCGC":44533, "GGCGG":69867, "GGGAA":37430, "GGGAT":36790, "GGGAC":22427, "GGGAG":38350, "GGGTA":18487, "GGGTT":59857, "GGGTC":32811, "GGGTG":46288, "GGGCA":37867, "GGGCT":41192, "GGGCC":31274, "GGGCG":42248, "GGGGA":38098, "GGGGT":44331, "GGGGC":36818, "GGGGG":32349 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-9B_S72_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-9B_S72_R2_001.fastq.gz -o AM-AL-9B.trim.R1.fastq.gz -O AM-AL-9B.trim.R2.fastq.gz -m --merged_out AM-AL-9B.trim.merged.fastq.gz " }