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"GAGTT":31759, "GAGTC":20957, "GAGTG":19498, "GAGCA":454238, "GAGCT":31197, "GAGCC":41525, "GAGCG":32501, "GAGGA":77882, "GAGGT":39584, "GAGGC":49237, "GAGGG":42844, "GTAAA":20383, "GTAAT":17802, "GTAAC":18353, "GTAAG":18958, "GTATA":11805, "GTATT":22574, "GTATC":19655, "GTATG":17706, "GTACA":17097, "GTACT":14768, "GTACC":19688, "GTACG":15204, "GTAGA":70172, "GTAGT":17720, "GTAGC":23900, "GTAGG":22624, "GTTAA":15060, "GTTAT":20169, "GTTAC":19753, "GTTAG":26028, "GTTTA":23462, "GTTTT":57815, "GTTTC":46556, "GTTTG":51994, "GTTCA":36769, "GTTCT":41468, "GTTCC":51676, "GTTCG":35832, "GTTGA":45295, "GTTGT":45971, "GTTGC":42046, "GTTGG":66582, "GTCAA":32976, "GTCAT":27605, "GTCAC":86429, "GTCAG":34447, "GTCTA":18496, "GTCTT":40425, "GTCTC":36718, "GTCTG":288066, "GTCCA":35648, "GTCCT":50699, "GTCCC":29756, "GTCCG":25733, "GTCGA":39906, "GTCGT":33367, "GTCGC":35409, "GTCGG":38190, "GTGAA":41421, "GTGAT":35923, "GTGAC":22977, "GTGAG":32730, "GTGTA":14136, "GTGTT":35051, "GTGTC":42771, 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"GCGCT":38713, "GCGCC":58446, "GCGCG":43810, "GCGGA":46440, "GCGGT":49319, "GCGGC":71252, "GCGGG":54855, "GGAAA":58713, "GGAAT":38060, "GGAAC":45053, "GGAAG":539062, "GGATA":35091, "GGATT":42848, "GGATC":35824, "GGATG":49458, "GGACA":33576, "GGACT":26003, "GGACC":29836, "GGACG":32850, "GGAGA":109428, "GGAGT":28594, "GGAGC":45138, "GGAGG":80970, "GGTAA":22765, "GGTAT":22959, "GGTAC":19567, "GGTAG":45992, "GGTTA":24814, "GGTTT":63143, "GGTTC":46460, "GGTTG":72766, "GGTCA":37757, "GGTCT":42521, "GGTCC":29583, "GGTCG":40458, "GGTGA":56900, "GGTGT":40548, "GGTGC":48004, "GGTGG":89335, "GGCAA":51252, "GGCAT":38821, "GGCAC":33774, "GGCAG":70095, "GGCTA":30862, "GGCTT":59020, "GGCTC":40828, "GGCTG":70005, "GGCCA":57154, "GGCCT":44609, "GGCCC":40404, "GGCCG":59559, "GGCGA":64878, "GGCGT":39485, "GGCGC":56638, "GGCGG":87739, "GGGAA":43854, "GGGAT":38919, "GGGAC":28117, "GGGAG":57771, "GGGTA":24831, "GGGTT":63118, "GGGTC":36489, "GGGTG":55974, "GGGCA":48961, "GGGCT":46731, "GGGCC":38167, "GGGCG":54196, "GGGGA":49649, "GGGGT":53965, "GGGGC":45726, "GGGGG":105622 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 884638, "total_bases": 53962918, "q20_bases": 52260664, "q30_bases": 49767578, "total_cycles": 61, "quality_curves": { "A":[39.4032,39.2614,39.174,38.9633,39.0808,39.0383,39.0849,38.8986,39.0882,39.1138,39.0865,39.0736,39.1303,39.1553,39.1245,39.1324,39.1202,39.1002,39.1334,39.1344,38.5363,39.1008,39.1141,39.1375,38.5727,39.1054,39.1297,38.5049,39.0152,38.69,39.0788,39.0898,39.0138,39.0716,39.0628,38.9888,39.0365,38.6929,38.5509,38.8608,38.3575,38.1604,38.553,38.4199,38.182,37.8149,37.425,37.0553,37.1953,36.805,36.4539,36.1359,35.7536,35.3262,35.023,34.617,34.3282,33.9825,33.6002,33.0938,32.5636], 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"CTCAA":32181, "CTCAT":24621, "CTCAC":25061, "CTCAG":24324, "CTCTA":15374, "CTCTT":38200, "CTCTC":31686, "CTCTG":31086, "CTCCA":48861, "CTCCT":72340, "CTCCC":43134, "CTCCG":36783, "CTCGA":29526, "CTCGT":24856, "CTCGC":29767, "CTCGG":31630, "CTGAA":30250, "CTGAT":27309, "CTGAC":22553, "CTGAG":22501, "CTGTA":11590, "CTGTT":38986, "CTGTC":21532, "CTGTG":23173, "CTGCA":32424, "CTGCT":64104, "CTGCC":49061, "CTGCG":30628, "CTGGA":41626, "CTGGT":44636, "CTGGC":43168, "CTGGG":43971, "CCAAA":60492, "CCAAT":29559, "CCAAC":66442, "CCAAG":40934, "CCATA":22192, "CCATT":29655, "CCATC":43782, "CCATG":29810, "CCACA":44901, "CCACT":23389, "CCACC":91566, "CCACG":31276, "CCAGA":40381, "CCAGT":30368, "CCAGC":66788, "CCAGG":41091, "CCTAA":14976, "CCTAT":16368, "CCTAC":19727, "CCTAG":11746, "CCTTA":14012, "CCTTT":43236, "CCTTC":53081, "CCTTG":40222, "CCTCA":39825, "CCTCT":36786, "CCTCC":77391, "CCTCG":38497, "CCTGA":31683, "CCTGT":35105, "CCTGC":68729, "CCTGG":43898, "CCCAA":61659, "CCCAT":32238, "CCCAC":55111, "CCCAG":48123, "CCCTA":17891, "CCCTT":32879, "CCCTC":42979, "CCCTG":37534, "CCCCA":62399, "CCCCT":38225, "CCCCC":42790, "CCCCG":40361, "CCCGA":33255, "CCCGT":23357, "CCCGC":48418, "CCCGG":36997, "CCGAA":33937, "CCGAT":31168, "CCGAC":32129, "CCGAG":31428, "CCGTA":15809, "CCGTT":24937, "CCGTC":30871, "CCGTG":23474, "CCGCA":35056, "CCGCT":34025, "CCGCC":77457, "CCGCG":34504, "CCGGA":32472, "CCGGT":33369, "CCGGC":49781, "CCGGG":34113, "CGAAA":31804, "CGAAT":21760, "CGAAC":25697, "CGAAG":34364, "CGATA":19405, "CGATT":25604, "CGATC":30200, "CGATG":35968, "CGACA":24140, "CGACT":22101, "CGACC":34876, "CGACG":31556, "CGAGA":28022, "CGAGT":16170, "CGAGC":27425, "CGAGG":32706, "CGTAA":14631, "CGTAT":11567, "CGTAC":10225, "CGTAG":14081, "CGTTA":9215, "CGTTT":24051, "CGTTC":24722, "CGTTG":26039, "CGTCA":21213, "CGTCT":23121, "CGTCC":26352, "CGTCG":30457, "CGTGA":20064, "CGTGT":12970, "CGTGC":18992, "CGTGG":27631, "CGCAA":24357, "CGCAT":18585, "CGCAC":22180, "CGCAG":27682, "CGCTA":11455, "CGCTT":28499, "CGCTC":26142, "CGCTG":34052, "CGCCA":46653, "CGCCT":45580, "CGCCC":46245, "CGCCG":56326, "CGCGA":24078, "CGCGT":15828, "CGCGC":30069, "CGCGG":33275, "CGGAA":30381, "CGGAT":24851, "CGGAC":17153, "CGGAG":30875, "CGGTA":16443, "CGGTT":30860, "CGGTC":28052, "CGGTG":38246, "CGGCA":35418, "CGGCT":40700, "CGGCC":42189, "CGGCG":51733, "CGGGA":26488, "CGGGT":28106, "CGGGC":32496, "CGGGG":32807, "GAAAA":55388, "GAAAT":35669, "GAAAC":34991, "GAAAG":36039, "GAATA":20674, "GAATT":28281, "GAATC":27292, "GAATG":23128, "GAACA":30731, "GAACT":25558, "GAACC":36501, "GAACG":22006, "GAAGA":50637, "GAAGT":25213, "GAAGC":44277, "GAAGG":41765, "GATAA":22980, "GATAT":20873, "GATAC":15777, "GATAG":19571, "GATTA":17424, "GATTT":40776, "GATTC":28842, "GATTG":28018, "GATCA":30097, "GATCT":29938, "GATCC":29065, "GATCG":27663, "GATGA":44073, "GATGT":25474, "GATGC":29056, "GATGG":40423, "GACAA":28486, "GACAT":21180, "GACAC":16543, "GACAG":19380, "GACTA":10701, "GACTT":26731, "GACTC":16440, "GACTG":18578, "GACCA":34026, "GACCT":26485, "GACCC":32235, "GACCG":29406, "GACGA":32152, "GACGT":15564, "GACGC":21944, "GACGG":26420, "GAGAA":44743, "GAGAT":31388, "GAGAC":26602, "GAGAG":26082, "GAGTA":11299, "GAGTT":23809, "GAGTC":15757, "GAGTG":13987, "GAGCA":32292, "GAGCT":21609, "GAGCC":30035, "GAGCG":21636, "GAGGA":56227, "GAGGT":28330, "GAGGC":35079, "GAGGG":31111, "GTAAA":15024, "GTAAT":13303, "GTAAC":12973, "GTAAG":9698, "GTATA":7822, "GTATT":17474, "GTATC":14365, "GTATG":13340, "GTACA":11311, "GTACT":10668, "GTACC":14252, "GTACG":10874, "GTAGA":16323, "GTAGT":13079, "GTAGC":16931, "GTAGG":15865, "GTTAA":10714, "GTTAT":15696, "GTTAC":14831, "GTTAG":9843, "GTTTA":15503, "GTTTT":46596, "GTTTC":36337, "GTTTG":41231, "GTTCA":25837, "GTTCT":32764, "GTTCC":40039, "GTTCG":26185, "GTTGA":32899, "GTTGT":36881, "GTTGC":31415, "GTTGG":52899, "GTCAA":22007, "GTCAT":20582, "GTCAC":16975, "GTCAG":18527, "GTCTA":11975, "GTCTT":31199, "GTCTC":29080, "GTCTG":23798, "GTCCA":24905, "GTCCT":27650, "GTCCC":22785, "GTCCG":18426, "GTCGA":26699, "GTCGT":24374, "GTCGC":24867, "GTCGG":26714, "GTGAA":27041, "GTGAT":25618, "GTGAC":16054, "GTGAG":19720, "GTGTA":8462, "GTGTT":27309, "GTGTC":14609, "GTGTG":21134, "GTGCA":17106, "GTGCT":26554, "GTGCC":25171, "GTGCG":19162, "GTGGA":31613, "GTGGT":46569, "GTGGC":36065, "GTGGG":40073, "GCAAA":30288, "GCAAT":22915, "GCAAC":31618, "GCAAG":26978, "GCATA":14530, "GCATT":22444, "GCATC":26959, "GCATG":21275, "GCACA":19500, "GCACT":14422, "GCACC":39349, "GCACG":19131, "GCAGA":30138, "GCAGT":19726, "GCAGC":42989, "GCAGG":51623, "GCTAA":11216, "GCTAT":16364, "GCTAC":17817, "GCTAG":10161, "GCTTA":13710, "GCTTT":38260, "GCTTC":52246, "GCTTG":37334, "GCTCA":25689, "GCTCT":25940, "GCTCC":39745, "GCTCG":29533, "GCTGA":32394, "GCTGT":28394, "GCTGC":46325, "GCTGG":61193, "GCCAA":42877, "GCCAT":31677, "GCCAC":40665, "GCCAG":40676, "GCCTA":16167, "GCCTT":36564, "GCCTC":41859, "GCCTG":45960, "GCCCA":43991, "GCCCT":33683, "GCCCC":40674, "GCCCG":35084, "GCCGA":42487, "GCCGT":31923, "GCCGC":54548, "GCCGG":46451, "GCGAA":27407, "GCGAT":27529, "GCGAC":25125, "GCGAG":24458, "GCGTA":10459, "GCGTT":21108, "GCGTC":20450, "GCGTG":20276, "GCGCA":24592, "GCGCT":25701, "GCGCC":39181, "GCGCG":28055, "GCGGA":30369, "GCGGT":36138, "GCGGC":48714, "GCGGG":39188, "GGAAA":41542, "GGAAT":29729, "GGAAC":33303, "GGAAG":39873, "GGATA":22156, "GGATT":33760, "GGATC":27117, "GGATG":36302, "GGACA":22419, "GGACT":19043, "GGACC":21895, "GGACG":22574, "GGAGA":48728, "GGAGT":21342, "GGAGC":32263, "GGAGG":58712, "GGTAA":15306, "GGTAT":17371, "GGTAC":14090, "GGTAG":19889, "GGTTA":15084, "GGTTT":50452, "GGTTC":36081, "GGTTG":58135, "GGTCA":25024, "GGTCT":32822, "GGTCC":22099, "GGTCG":28469, "GGTGA":37911, "GGTGT":31411, "GGTGC":34334, "GGTGG":68110, "GGCAA":33754, "GGCAT":27767, "GGCAC":23408, "GGCAG":38234, "GGCTA":18913, "GGCTT":44377, "GGCTC":30976, "GGCTG":51845, "GGCCA":35437, "GGCCT":32142, "GGCCC":28675, "GGCCG":40339, "GGCGA":42630, "GGCGT":27587, "GGCGC":36583, "GGCGG":62795, "GGGAA":30136, "GGGAT":28757, "GGGAC":19983, "GGGAG":33435, "GGGTA":15089, "GGGTT":49865, "GGGTC":27420, "GGGTG":41271, "GGGCA":31680, "GGGCT":35114, "GGGCC":26650, "GGGCG":37306, "GGGGA":33561, "GGGGT":40013, "GGGGC":32968, "GGGGG":30019 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-9A_S71_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-9A_S71_R2_001.fastq.gz -o AM-AL-9A.trim.R1.fastq.gz -O AM-AL-9A.trim.R2.fastq.gz -m --merged_out AM-AL-9A.trim.merged.fastq.gz " }