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"GCGCA":64525, "GCGCT":59339, "GCGCC":92251, "GCGCG":72459, "GCGGA":63478, "GCGGT":63086, "GCGGC":105424, "GCGGG":76011, "GGAAA":77224, "GGAAT":49243, "GGAAC":61041, "GGAAG":444162, "GGATA":45277, "GGATT":54211, "GGATC":49030, "GGATG":68135, "GGACA":45314, "GGACT":33185, "GGACC":40357, "GGACG":47795, "GGAGA":120886, "GGAGT":35890, "GGAGC":62496, "GGAGG":99192, "GGTAA":30159, "GGTAT":30508, "GGTAC":27153, "GGTAG":54818, "GGTTA":29526, "GGTTT":74868, "GGTTC":56722, "GGTTG":81360, "GGTCA":52613, "GGTCT":52974, "GGTCC":39185, "GGTCG":57949, "GGTGA":74579, "GGTGT":49303, "GGTGC":63066, "GGTGG":105147, "GGCAA":76611, "GGCAT":57167, "GGCAC":50146, "GGCAG":88415, "GGCTA":40771, "GGCTT":77432, "GGCTC":53342, "GGCTG":92440, "GGCCA":87740, "GGCCT":63289, "GGCCC":58267, "GGCCG":90861, "GGCGA":94510, "GGCGT":59702, "GGCGC":92296, "GGCGG":118866, "GGGAA":59029, "GGGAT":52443, "GGGAC":38565, "GGGAG":73115, "GGGTA":32742, "GGGTT":71113, "GGGTC":47312, "GGGTG":70109, "GGGCA":68289, "GGGCT":60387, "GGGCC":56872, "GGGCG":80205, "GGGGA":64848, "GGGGT":65687, "GGGGC":61215, "GGGGG":125103 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1056863, "total_bases": 64468643, "q20_bases": 62664254, "q30_bases": 59880286, "total_cycles": 61, "quality_curves": { "A":[39.1772,39.048,39.0221,38.7982,38.8262,39.0634,39.0232,38.8211,39.0745,39.0459,39.0649,39.0424,39.0798,39.0853,39.0771,39.0543,39.077,39.0535,39.0875,39.0737,38.507,39.0529,39.0726,39.1011,38.526,39.025,39.0776,38.4945,38.9191,38.6991,39.0584,39.0693,38.9992,39.0372,39.0007,38.9502,38.9969,38.6434,38.8968,38.8397,38.6938,38.1623,38.6007,38.5051,38.3313,38.0832,37.6263,37.425,37.7555,37.4497,37.2421,37.0609,36.8944,36.4639,36.3719,36.0876,35.8993,35.6775,35.5078,34.998,34.868], 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"CCTGG":56990, "CCCAA":63125, "CCCAT":38238, "CCCAC":58253, "CCCAG":56081, "CCCTA":19915, "CCCTT":38672, "CCCTC":47221, "CCCTG":44829, "CCCCA":65335, "CCCCT":41749, "CCCCC":46742, "CCCCG":47162, "CCCGA":38536, "CCCGT":28389, "CCCGC":56949, "CCCGG":45770, "CCGAA":40237, "CCGAT":37954, "CCGAC":39744, "CCGAG":38225, "CCGTA":19289, "CCGTT":30227, "CCGTC":38222, "CCGTG":29453, "CCGCA":43107, "CCGCT":42228, "CCGCC":88319, "CCGCG":43348, "CCGGA":40273, "CCGGT":39915, "CCGGC":64739, "CCGGG":43001, "CGAAA":38575, "CGAAT":25883, "CGAAC":31411, "CGAAG":44643, "CGATA":23978, "CGATT":31493, "CGATC":38318, "CGATG":45695, "CGACA":32352, "CGACT":26855, "CGACC":43687, "CGACG":42368, "CGAGA":34347, "CGAGT":19867, "CGAGC":35113, "CGAGG":41030, "CGTAA":16737, "CGTAT":14841, "CGTAC":13283, "CGTAG":17800, "CGTTA":12004, "CGTTT":29069, "CGTTC":30668, "CGTTG":31650, "CGTCA":28595, "CGTCT":28008, "CGTCC":32293, "CGTCG":39932, "CGTGA":24258, "CGTGT":15751, "CGTGC":25343, "CGTGG":33756, "CGCAA":31100, "CGCAT":24477, "CGCAC":28409, "CGCAG":36727, "CGCTA":14974, "CGCTT":35272, "CGCTC":33556, "CGCTG":45542, "CGCCA":59462, "CGCCT":53499, "CGCCC":56761, "CGCCG":73449, "CGCGA":31445, "CGCGT":21128, "CGCGC":42052, "CGCGG":42159, "CGGAA":37408, "CGGAT":31074, "CGGAC":23067, "CGGAG":37091, "CGGTA":21015, "CGGTT":34939, "CGGTC":34561, "CGGTG":45134, "CGGCA":49166, "CGGCT":50327, "CGGCC":56524, "CGGCG":70404, "CGGGA":34813, "CGGGT":33475, "CGGGC":41718, "CGGGG":40835, "GAAAA":65471, "GAAAT":42843, "GAAAC":40548, "GAAAG":45186, "GAATA":25565, "GAATT":33719, "GAATC":31959, "GAATG":28077, "GAACA":39097, "GAACT":32099, "GAACC":41577, "GAACG":28530, "GAAGA":63966, "GAAGT":32718, "GAAGC":54427, "GAAGG":52986, "GATAA":28139, "GATAT":25521, "GATAC":20057, "GATAG":23534, "GATTA":20829, "GATTT":46993, "GATTC":34437, "GATTG":33739, "GATCA":38295, "GATCT":35953, "GATCC":36483, "GATCG":35355, "GATGA":52715, "GATGT":31107, "GATGC":37912, "GATGG":49949, "GACAA":36167, "GACAT":25968, "GACAC":20468, "GACAG":25171, "GACTA":13977, "GACTT":31369, "GACTC":18940, "GACTG":23169, "GACCA":42188, "GACCT":32179, "GACCC":37012, "GACCG":36203, "GACGA":42153, "GACGT":20673, "GACGC":30079, "GACGG":35857, "GAGAA":53166, "GAGAT":37944, "GAGAC":32394, "GAGAG":30205, "GAGTA":14181, "GAGTT":28580, "GAGTC":17905, "GAGTG":16529, "GAGCA":41292, "GAGCT":28230, "GAGCC":35978, "GAGCG":29724, "GAGGA":64720, "GAGGT":35033, "GAGGC":43164, "GAGGG":36630, "GTAAA":18587, "GTAAT":15993, "GTAAC":15280, "GTAAG":12358, "GTATA":10343, "GTATT":20420, "GTATC":18053, "GTATG":16308, "GTACA":14644, "GTACT":13351, "GTACC":17489, "GTACG":13472, "GTAGA":20652, "GTAGT":16136, "GTAGC":20840, "GTAGG":20149, "GTTAA":13599, "GTTAT":19301, "GTTAC":17803, "GTTAG":11283, "GTTTA":18428, "GTTTT":51759, "GTTTC":42097, "GTTTG":44339, "GTTCA":32862, "GTTCT":37597, "GTTCC":45980, "GTTCG":32002, "GTTGA":38962, "GTTGT":39098, "GTTGC":37789, "GTTGG":56629, "GTCAA":29344, "GTCAT":25784, "GTCAC":21783, "GTCAG":24881, "GTCTA":14482, "GTCTT":36781, "GTCTC":33509, "GTCTG":28304, "GTCCA":30961, "GTCCT":31980, "GTCCC":27161, "GTCCG":22818, "GTCGA":34431, "GTCGT":29216, "GTCGC":33644, "GTCGG":34830, "GTGAA":32595, "GTGAT":31086, "GTGAC":20087, "GTGAG":21721, "GTGTA":11083, "GTGTT":29536, "GTGTC":17924, "GTGTG":21566, "GTGCA":21297, "GTGCT":30408, "GTGCC":30692, "GTGCG":23844, "GTGGA":37352, "GTGGT":48689, "GTGGC":42309, "GTGGG":43558, "GCAAA":39728, "GCAAT":29875, "GCAAC":38376, "GCAAG":36233, "GCATA":18554, "GCATT":27315, "GCATC":35814, "GCATG":27807, "GCACA":24216, "GCACT":18182, "GCACC":47298, "GCACG":26687, "GCAGA":38455, "GCAGT":25017, "GCAGC":53277, "GCAGG":63894, "GCTAA":14125, "GCTAT":21001, "GCTAC":22857, "GCTAG":11665, "GCTTA":17140, "GCTTT":44756, "GCTTC":58886, "GCTTG":44952, "GCTCA":33180, "GCTCT":30484, "GCTCC":47435, "GCTCG":36304, "GCTGA":41751, "GCTGT":33828, "GCTGC":54160, "GCTGG":72996, "GCCAA":52136, "GCCAT":42203, "GCCAC":46922, "GCCAG":53890, "GCCTA":19713, "GCCTT":44976, "GCCTC":48066, "GCCTG":55603, "GCCCA":52520, "GCCCT":40650, "GCCCC":46669, "GCCCG":44608, "GCCGA":54686, "GCCGT":41013, "GCCGC":69379, "GCCGG":60236, "GCGAA":35629, "GCGAT":35657, "GCGAC":34729, "GCGAG":31005, "GCGTA":14358, "GCGTT":26553, "GCGTC":27270, "GCGTG":25973, "GCGCA":34429, "GCGCT":34728, "GCGCC":53701, "GCGCG":40164, "GCGGA":39107, "GCGGT":41629, "GCGGC":64268, "GCGGG":48723, "GGAAA":51048, "GGAAT":35004, "GGAAC":41136, "GGAAG":50013, "GGATA":27869, "GGATT":39112, "GGATC":33697, "GGATG":45249, "GGACA":28206, "GGACT":22188, "GGACC":26897, "GGACG":29749, "GGAGA":58498, "GGAGT":24440, "GGAGC":41048, "GGAGG":67638, "GGTAA":18910, "GGTAT":20609, "GGTAC":17435, "GGTAG":25318, "GGTTA":17901, "GGTTT":55198, "GGTTC":40240, "GGTTG":59574, "GGTCA":32690, "GGTCT":37883, "GGTCC":26119, "GGTCG":37333, "GGTGA":44939, "GGTGT":34053, "GGTGC":40362, "GGTGG":72351, "GGCAA":46299, "GGCAT":36779, "GGCAC":31047, "GGCAG":47199, "GGCTA":24411, "GGCTT":52352, "GGCTC":37016, "GGCTG":61133, "GGCCA":49202, "GGCCT":41444, "GGCCC":36646, "GGCCG":53913, "GGCGA":56567, "GGCGT":36217, "GGCGC":51054, "GGCGG":76294, "GGGAA":37575, "GGGAT":35736, "GGGAC":24796, "GGGAG":41253, "GGGTA":19269, "GGGTT":51221, "GGGTC":32349, "GGGTG":45534, "GGGCA":40850, "GGGCT":40823, "GGGCC":35196, "GGGCG":47504, "GGGGA":40968, "GGGGT":43517, "GGGGC":40310, "GGGGG":34360 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-8A_S68_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-8A_S68_R2_001.fastq.gz -o AM-AL-8A.trim.R1.fastq.gz -O AM-AL-8A.trim.R2.fastq.gz -m --merged_out AM-AL-8A.trim.merged.fastq.gz " }