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"CGGAC":36986, "CGGAG":81334, "CGGTA":34941, "CGGTT":55634, "CGGTC":54514, "CGGTG":64660, "CGGCA":79552, "CGGCT":72231, "CGGCC":82769, "CGGCG":103733, "CGGGA":68955, "CGGGT":49097, "CGGGC":64296, "CGGGG":68833, "GAAAA":82372, "GAAAT":60425, "GAAAC":61868, "GAAAG":75261, "GAATA":40765, "GAATT":46242, "GAATC":51394, "GAATG":45970, "GAACA":62829, "GAACT":226847, "GAACC":69701, "GAACG":48190, "GAAGA":605307, "GAAGT":49289, "GAAGC":81362, "GAAGG":81120, "GATAA":46369, "GATAT":41811, "GATAC":33931, "GATAG":54831, "GATTA":32726, "GATTT":58674, "GATTC":53788, "GATTG":59402, "GATCA":60294, "GATCT":53878, "GATCC":58362, "GATCG":616968, "GATGA":83974, "GATGT":46297, "GATGC":55186, "GATGG":75797, "GACAA":56826, "GACAT":39947, "GACAC":32940, "GACAG":52478, "GACTA":24088, "GACTT":43622, "GACTC":31286, "GACTG":36745, "GACCA":66567, "GACCT":49856, "GACCC":56362, "GACCG":55106, "GACGA":69062, "GACGT":27912, "GACGC":43600, "GACGG":55659, "GAGAA":88559, "GAGAT":192363, "GAGAC":53067, "GAGAG":59097, 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"GCGCA":49530, "GCGCT":46621, "GCGCC":73356, "GCGCG":53909, "GCGGA":69618, "GCGGT":60305, "GCGGC":94839, "GCGGG":79814, "GGAAA":77784, "GGAAT":55622, "GGAAC":72245, "GGAAG":576845, "GGATA":52057, "GGATT":59875, "GGATC":54889, "GGATG":73778, "GGACA":49846, "GGACT":36078, "GGACC":44167, "GGACG":50658, "GGAGA":154136, "GGAGT":39158, "GGAGC":94021, "GGAGG":113537, "GGTAA":28508, "GGTAT":33681, "GGTAC":25665, "GGTAG":52164, "GGTTA":30235, "GGTTT":71511, "GGTTC":66477, "GGTTG":87987, "GGTCA":51384, "GGTCT":58152, "GGTCC":42201, "GGTCG":56533, "GGTGA":69074, "GGTGT":47813, "GGTGC":58959, "GGTGG":105644, "GGCAA":73008, "GGCAT":55151, "GGCAC":45678, "GGCAG":96458, "GGCTA":38464, "GGCTT":69623, "GGCTC":56771, "GGCTG":85932, "GGCCA":73500, "GGCCT":59251, "GGCCC":56044, "GGCCG":79475, "GGCGA":88350, "GGCGT":50071, "GGCGC":72020, "GGCGG":120090, "GGGAA":65504, "GGGAT":60135, "GGGAC":42700, "GGGAG":90612, "GGGTA":31653, "GGGTT":68741, "GGGTC":47784, "GGGTG":65495, "GGGCA":66306, "GGGCT":58711, "GGGCC":53111, "GGGCG":72053, "GGGGA":73732, "GGGGT":64004, "GGGGC":66552, "GGGGG":125551 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1120118, "total_bases": 68327198, "q20_bases": 66517846, "q30_bases": 63598382, "total_cycles": 61, "quality_curves": { "A":[39.3853,39.1016,39.065,38.9519,38.9286,39.1602,39.1385,38.9633,39.1349,39.1306,39.191,39.1608,39.1791,39.1685,39.1292,39.1311,39.1729,39.1605,39.1808,39.1482,38.6721,39.104,39.1495,39.1528,38.7372,39.1352,39.1702,38.6519,39.0992,38.7894,39.1095,39.1446,39.0773,39.1282,39.005,38.6282,39.0518,38.6524,38.9574,38.5523,38.3988,38.6971,38.651,38.5393,38.3379,38.0485,37.8029,37.4605,37.6348,37.3369,37.0965,36.8619,36.6402,36.2315,36.0219,35.685,35.411,35.0882,34.8271,34.2792,33.9511], 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"CTTGT":51503, "CTTGC":56009, "CTTGG":64242, "CTCAA":48151, "CTCAT":41436, "CTCAC":34113, "CTCAG":38468, "CTCTA":25121, "CTCTT":62316, "CTCTC":51710, "CTCTG":46478, "CTCCA":78054, "CTCCT":117967, "CTCCC":83714, "CTCCG":67196, "CTCGA":49664, "CTCGT":41667, "CTCGC":49140, "CTCGG":51393, "CTGAA":48427, "CTGAT":46931, "CTGAC":34928, "CTGAG":37670, "CTGTA":21143, "CTGTT":57635, "CTGTC":37591, "CTGTG":38207, "CTGCA":48154, "CTGCT":94755, "CTGCC":79515, "CTGCG":50263, "CTGGA":80577, "CTGGT":70862, "CTGGC":71535, "CTGGG":69858, "CCAAA":69108, "CCAAT":50274, "CCAAC":83912, "CCAAG":64502, "CCATA":35721, "CCATT":49590, "CCATC":76249, "CCATG":49810, "CCACA":66800, "CCACT":39484, "CCACC":121720, "CCACG":49879, "CCAGA":66246, "CCAGT":55668, "CCAGC":106836, "CCAGG":71665, "CCTAA":19746, "CCTAT":29950, "CCTAC":32488, "CCTAG":17506, "CCTTA":23105, "CCTTT":64098, "CCTTC":90762, "CCTTG":68157, "CCTCA":54907, "CCTCT":59943, "CCTCC":122433, "CCTCG":63197, "CCTGA":56817, "CCTGT":57097, "CCTGC":106516, "CCTGG":75231, "CCCAA":78352, "CCCAT":54115, "CCCAC":79089, "CCCAG":75500, "CCCTA":25684, "CCCTT":51198, "CCCTC":62326, "CCCTG":63019, "CCCCA":90474, "CCCCT":58511, "CCCCC":67441, "CCCCG":68999, "CCCGA":55489, "CCCGT":40724, "CCCGC":80554, "CCCGG":63426, "CCGAA":54653, "CCGAT":49661, "CCGAC":52327, "CCGAG":49570, "CCGTA":25561, "CCGTT":42324, "CCGTC":54423, "CCGTG":38368, "CCGCA":59695, "CCGCT":61404, "CCGCC":119070, "CCGCG":54257, "CCGGA":59521, "CCGGT":54239, "CCGGC":87816, "CCGGG":60331, "CGAAA":46933, "CGAAT":33876, "CGAAC":45040, "CGAAG":56073, "CGATA":31997, "CGATT":41645, "CGATC":49401, "CGATG":57818, "CGACA":41982, "CGACT":33350, "CGACC":56980, "CGACG":50564, "CGAGA":47442, "CGAGT":26553, "CGAGC":47123, "CGAGG":55952, "CGTAA":18613, "CGTAT":19824, "CGTAC":17320, "CGTAG":22751, "CGTTA":14459, "CGTTT":35278, "CGTTC":45076, "CGTTG":40863, "CGTCA":38582, "CGTCT":40643, "CGTCC":48652, "CGTCG":48815, "CGTGA":31135, "CGTGT":20844, "CGTGC":28916, "CGTGG":44465, "CGCAA":40581, "CGCAT":30631, "CGCAC":36152, "CGCAG":47601, "CGCTA":19985, "CGCTT":46602, "CGCTC":49527, "CGCTG":52676, "CGCCA":71295, "CGCCT":73263, "CGCCC":73439, "CGCCG":91887, "CGCGA":39230, "CGCGT":25700, "CGCGC":48964, "CGCGG":52482, "CGGAA":51940, "CGGAT":45020, "CGGAC":32014, "CGGAG":58928, "CGGTA":27282, "CGGTT":49731, "CGGTC":48068, "CGGTG":55986, "CGGCA":64126, "CGGCT":64702, "CGGCC":72383, "CGGCG":88937, "CGGGA":57496, "CGGGT":43524, "CGGGC":56584, "CGGGG":60228, "GAAAA":71540, "GAAAT":53867, "GAAAC":55486, "GAAAG":57457, "GAATA":34620, "GAATT":41828, "GAATC":45821, "GAATG":40922, "GAACA":52904, "GAACT":51153, "GAACC":61076, "GAACG":42393, "GAAGA":87031, "GAAGT":43672, "GAAGC":72002, "GAAGG":72102, "GATAA":40129, "GATAT":37853, "GATAC":30538, "GATAG":35587, "GATTA":27291, "GATTT":53071, "GATTC":47990, "GATTG":53363, "GATCA":51128, "GATCT":47509, "GATCC":51794, "GATCG":46336, "GATGA":72944, "GATGT":41761, "GATGC":48996, "GATGG":68562, "GACAA":49140, "GACAT":35156, "GACAC":29015, "GACAG":34675, "GACTA":19129, "GACTT":39418, "GACTC":27478, "GACTG":32474, "GACCA":56049, "GACCT":44085, "GACCC":49848, "GACCG":48106, "GACGA":58959, "GACGT":24464, "GACGC":38012, "GACGG":49540, "GAGAA":76191, "GAGAT":54752, "GAGAC":47184, "GAGAG":43249, "GAGTA":20013, "GAGTT":38416, "GAGTC":25627, "GAGTG":24255, "GAGCA":59860, "GAGCT":38403, "GAGCC":49646, "GAGCG":43747, "GAGGA":94541, "GAGGT":45868, "GAGGC":61471, "GAGGG":47749, "GTAAA":22314, "GTAAT":21194, "GTAAC":18421, "GTAAG":16802, "GTATA":14290, "GTATT":27183, "GTATC":28416, "GTATG":22381, "GTACA":18130, "GTACT":18497, "GTACC":23366, "GTACG":17025, "GTAGA":27090, "GTAGT":21868, "GTAGC":26194, "GTAGG":26253, "GTTAA":15521, "GTTAT":25955, "GTTAC":21350, "GTTAG":14705, "GTTTA":21351, "GTTTT":54954, "GTTTC":58251, "GTTTG":54161, "GTTCA":43970, "GTTCT":56696, "GTTCC":71998, "GTTCG":45669, "GTTGA":48528, "GTTGT":50508, "GTTGC":50167, "GTTGG":71081, "GTCAA":40151, "GTCAT":38268, "GTCAC":28783, "GTCAG":31003, "GTCTA":18142, "GTCTT":51326, "GTCTC":48682, "GTCTG":39023, "GTCCA":43815, "GTCCT":47811, "GTCCC":40764, "GTCCG":32347, "GTCGA":40286, "GTCGT":38287, "GTCGC":42156, "GTCGG":46101, "GTGAA":39717, "GTGAT":41337, "GTGAC":27374, "GTGAG":28288, "GTGTA":14594, "GTGTT":35374, "GTGTC":25804, "GTGTG":28506, "GTGCA":26501, "GTGCT":39450, "GTGCC":40351, "GTGCG":30578, "GTGGA":50902, "GTGGT":63967, "GTGGC":52750, "GTGGG":59523, "GCAAA":47518, "GCAAT":39606, "GCAAC":51250, "GCAAG":49415, "GCATA":24466, "GCATT":36115, "GCATC":49283, "GCATG":32645, "GCACA":33925, "GCACT":23666, "GCACC":60221, "GCACG":29796, "GCAGA":55390, "GCAGT":32300, "GCAGC":61644, "GCAGG":91109, "GCTAA":16677, "GCTAT":30186, "GCTAC":28519, "GCTAG":15158, "GCTTA":21014, "GCTTT":53201, "GCTTC":79973, "GCTTG":55911, "GCTCA":40450, "GCTCT":40233, "GCTCC":75333, "GCTCG":48709, "GCTGA":49642, "GCTGT":40798, "GCTGC":63894, "GCTGG":99009, "GCCAA":64686, "GCCAT":54692, "GCCAC":58071, "GCCAG":68146, "GCCTA":23654, "GCCTT":60034, "GCCTC":68710, "GCCTG":71355, "GCCCA":64053, "GCCCT":51001, "GCCCC":68840, "GCCCG":58872, "GCCGA":65943, "GCCGT":52578, "GCCGC":87712, "GCCGG":81392, "GCGAA":43673, "GCGAT":44984, "GCGAC":44493, "GCGAG":42477, "GCGTA":16585, "GCGTT":33280, "GCGTC":35853, "GCGTG":30244, "GCGCA":40225, "GCGCT":40787, "GCGCC":64342, "GCGCG":46303, "GCGGA":56476, "GCGGT":53066, "GCGGC":82086, "GCGGG":69805, "GGAAA":65473, "GGAAT":50071, "GGAAC":64637, "GGAAG":71563, "GGATA":41689, "GGATT":54091, "GGATC":49083, "GGATG":65700, "GGACA":40733, "GGACT":32298, "GGACC":38741, "GGACG":44344, "GGAGA":90388, "GGAGT":34913, "GGAGC":68694, "GGAGG":99291, "GGTAA":23901, "GGTAT":30318, "GGTAC":22692, "GGTAG":32681, "GGTTA":23381, "GGTTT":64792, "GGTTC":59862, "GGTTG":79291, "GGTCA":42848, "GGTCT":52142, "GGTCC":37650, "GGTCG":49289, "GGTGA":57950, "GGTGT":42726, "GGTGC":52330, "GGTGG":93209, "GGCAA":61172, "GGCAT":49235, "GGCAC":40607, "GGCAG":66989, "GGCTA":29831, "GGCTT":62245, "GGCTC":50854, "GGCTG":76663, "GGCCA":59363, "GGCCT":52922, "GGCCC":49736, "GGCCG":68678, "GGCGA":73045, "GGCGT":43714, "GGCGC":62297, "GGCGG":103890, "GGGAA":54678, "GGGAT":53332, "GGGAC":38064, "GGGAG":67756, "GGGTA":24984, "GGGTT":61824, "GGGTC":42625, "GGGTG":57404, "GGGCA":54425, "GGGCT":53067, "GGGCC":46595, "GGGCG":62045, "GGGGA":61437, "GGGGT":55823, "GGGGC":58949, "GGGGG":49478 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-7C_S67_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-7C_S67_R2_001.fastq.gz -o AM-AL-7C.trim.R1.fastq.gz -O AM-AL-7C.trim.R2.fastq.gz -m --merged_out AM-AL-7C.trim.merged.fastq.gz " }