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"CTCGG":61905, "CTGAA":219821, "CTGAT":53368, "CTGAC":44328, "CTGAG":57863, "CTGTA":23581, "CTGTT":65167, "CTGTC":46441, "CTGTG":43944, "CTGCA":66322, "CTGCT":98772, "CTGCC":90860, "CTGCG":59500, "CTGGA":80172, "CTGGT":69391, "CTGGC":81604, "CTGGG":81005, "CCAAA":112035, "CCAAT":52647, "CCAAC":115168, "CCAAG":99600, "CCATA":44387, "CCATT":53036, "CCATC":89558, "CCATG":59749, "CCACA":100261, "CCACT":46915, "CCACC":139831, "CCACG":67710, "CCAGA":143656, "CCAGT":125952, "CCAGC":121593, "CCAGG":77883, "CCTAA":27828, "CCTAT":34929, "CCTAC":42083, "CCTAG":44339, "CCTTA":30926, "CCTTT":78909, "CCTTC":116812, "CCTTG":80857, "CCTCA":83483, "CCTCT":80922, "CCTCC":143874, "CCTCG":81449, "CCTGA":71869, "CCTGT":62291, "CCTGC":115372, "CCTGG":77447, "CCCAA":114182, "CCCAT":63890, "CCCAC":105027, "CCCAG":113836, "CCCTA":39832, "CCCTT":64488, "CCCTC":84170, "CCCTG":70183, "CCCCA":118189, "CCCCT":71880, "CCCCC":81419, "CCCCG":76445, "CCCGA":73380, "CCCGT":45943, "CCCGC":89908, "CCCGG":69579, "CCGAA":84703, "CCGAT":57457, "CCGAC":63164, "CCGAG":76425, "CCGTA":52081, "CCGTT":47726, "CCGTC":63705, "CCGTG":43991, "CCGCA":78194, "CCGCT":65785, "CCGCC":139305, "CCGCG":64009, "CCGGA":65359, "CCGGT":57058, "CCGGC":91365, "CCGGG":63395, "CGAAA":73378, "CGAAT":41927, "CGAAC":62271, "CGAAG":93542, "CGATA":36113, "CGATT":51327, "CGATC":68179, "CGATG":71986, "CGACA":59651, "CGACT":45660, "CGACC":69608, "CGACG":65188, "CGAGA":97955, "CGAGT":35491, "CGAGC":58751, "CGAGG":67982, "CGTAA":23539, "CGTAT":41070, "CGTAC":20737, "CGTAG":38904, "CGTTA":19243, "CGTTT":48340, "CGTTC":53823, "CGTTG":51349, "CGTCA":54139, "CGTCT":239560, "CGTCC":57782, "CGTCG":60732, "CGTGA":40270, "CGTGT":26329, "CGTGC":36370, "CGTGG":53767, "CGCAA":56326, "CGCAT":38693, "CGCAC":48350, "CGCAG":70656, "CGCTA":26813, "CGCTT":58705, "CGCTC":58733, "CGCTG":63143, "CGCCA":96599, "CGCCT":92481, "CGCCC":91489, "CGCCG":107044, "CGCGA":53614, "CGCGT":34651, "CGCGC":62945, "CGCGG":59107, "CGGAA":484222, "CGGAT":47563, "CGGAC":37320, "CGGAG":75148, "CGGTA":30950, "CGGTT":54931, "CGGTC":55579, "CGGTG":57651, "CGGCA":75806, "CGGCT":76412, "CGGCC":80300, "CGGCG":97339, "CGGGA":58838, "CGGGT":47659, "CGGGC":59717, "CGGGG":59145, "GAAAA":108503, "GAAAT":62205, "GAAAC":75064, "GAAAG":86506, "GAATA":40277, "GAATT":44671, "GAATC":55680, "GAATG":46521, "GAACA":77029, "GAACT":176343, "GAACC":80382, "GAACG":54801, "GAAGA":535531, "GAAGT":49156, "GAAGC":94244, "GAAGG":88213, "GATAA":37361, "GATAT":32697, "GATAC":28138, "GATAG":48223, "GATTA":30048, "GATTT":59966, "GATTC":57314, "GATTG":53295, "GATCA":69980, "GATCT":60422, "GATCC":64471, "GATCG":537637, "GATGA":82290, "GATGT":45122, "GATGC":56033, "GATGG":72180, "GACAA":67386, "GACAT":42389, "GACAC":37083, "GACAG":54759, "GACTA":25800, "GACTT":48988, "GACTC":35896, "GACTG":40356, "GACCA":69985, "GACCT":54826, "GACCC":62691, "GACCG":55992, "GACGA":74686, "GACGT":32901, "GACGC":49318, "GACGG":53078, "GAGAA":101236, "GAGAT":169959, "GAGAC":59102, "GAGAG":61582, "GAGTA":23176, "GAGTT":43177, "GAGTC":31472, "GAGTG":26104, "GAGCA":384139, "GAGCT":46720, "GAGCC":60809, "GAGCG":48047, "GAGGA":108524, "GAGGT":54409, "GAGGC":73507, "GAGGG":55695, "GTAAA":20808, "GTAAT":19037, "GTAAC":20568, "GTAAG":20305, "GTATA":13205, "GTATT":28163, "GTATC":40451, "GTATG":24346, "GTACA":22004, "GTACT":19892, "GTACC":22209, "GTACG":20560, "GTAGA":66802, "GTAGT":21228, "GTAGC":27671, "GTAGG":28742, "GTTAA":15977, "GTTAT":24421, "GTTAC":24141, "GTTAG":24839, "GTTTA":23742, "GTTTT":72400, "GTTTC":69719, "GTTTG":67390, "GTTCA":54124, "GTTCT":64651, "GTTCC":71474, "GTTCG":50225, "GTTGA":61717, "GTTGT":57746, "GTTGC":56435, "GTTGG":78698, "GTCAA":53635, "GTCAT":42890, "GTCAC":79505, "GTCAG":49057, "GTCTA":26666, "GTCTT":61583, "GTCTC":61204, "GTCTG":221244, "GTCCA":50070, "GTCCT":53843, "GTCCC":46819, "GTCCG":40474, "GTCGA":54915, "GTCGT":45152, "GTCGC":49285, "GTCGG":50218, "GTGAA":49268, "GTGAT":44989, "GTGAC":31469, "GTGAG":40524, "GTGTA":16783, "GTGTT":41373, "GTGTC":28355, "GTGTG":35365, "GTGCA":32909, "GTGCT":42446, "GTGCC":43795, "GTGCG":35834, "GTGGA":58052, "GTGGT":62703, "GTGGC":60958, "GTGGG":64670, "GCAAA":69977, "GCAAT":44888, "GCAAC":65021, "GCAAG":71343, "GCATA":32902, "GCATT":40105, "GCATC":57916, "GCATG":40541, "GCACA":328806, "GCACT":28700, "GCACC":71255, "GCACG":39019, "GCAGA":119552, "GCAGT":35352, "GCAGC":75070, "GCAGG":90606, "GCTAA":22184, "GCTAT":32191, "GCTAC":31894, "GCTAG":33588, "GCTTA":27870, "GCTTT":70852, "GCTTC":103807, "GCTTG":70117, "GCTCA":56194, "GCTCT":53845, "GCTCC":75510, "GCTCG":58028, "GCTGA":69924, "GCTGT":49146, "GCTGC":75080, "GCTGG":100359, "GCCAA":93578, "GCCAT":64088, "GCCAC":76847, "GCCAG":101330, "GCCTA":42277, "GCCTT":76726, "GCCTC":88152, "GCCTG":85681, "GCCCA":93384, "GCCCT":65709, "GCCCC":76008, "GCCCG":67897, "GCCGA":88446, "GCCGT":59890, "GCCGC":101778, "GCCGG":83001, "GCGAA":64077, "GCGAT":54846, "GCGAC":53126, "GCGAG":61962, "GCGTA":24073, "GCGTT":43900, "GCGTC":43838, "GCGTG":39207, "GCGCA":51530, "GCGCT":50255, "GCGCC":77179, "GCGCG":58200, "GCGGA":68211, "GCGGT":56665, "GCGGC":89738, "GCGGG":68290, "GGAAA":90107, "GGAAT":54914, "GGAAC":67470, "GGAAG":488150, "GGATA":41330, "GGATT":56684, "GGATC":56491, "GGATG":66142, "GGACA":50612, "GGACT":33682, "GGACC":44543, "GGACG":46502, "GGAGA":138946, "GGAGT":34720, "GGAGC":62694, "GGAGG":104311, "GGTAA":23214, "GGTAT":26071, "GGTAC":22709, "GGTAG":45319, "GGTTA":28251, "GGTTT":81310, "GGTTC":66473, "GGTTG":88002, "GGTCA":51725, "GGTCT":59579, "GGTCC":43452, "GGTCG":54745, "GGTGA":63342, "GGTGT":46803, "GGTGC":52295, "GGTGG":90808, "GGCAA":76463, "GGCAT":55310, "GGCAC":44658, "GGCAG":91944, "GGCTA":40483, "GGCTT":83304, "GGCTC":61413, "GGCTG":93417, "GGCCA":76754, "GGCCT":64305, "GGCCC":55189, "GGCCG":74930, "GGCGA":90351, "GGCGT":52426, "GGCGC":71204, "GGCGG":108018, "GGGAA":63591, "GGGAT":51683, "GGGAC":38656, "GGGAG":75455, "GGGTA":27712, "GGGTT":73393, "GGGTC":48351, "GGGTG":62413, "GGGCA":63245, "GGGCT":62522, "GGGCC":49331, "GGGCG":67810, "GGGGA":64268, "GGGGT":58519, "GGGGC":57043, "GGGGG":108788 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1123730, "total_bases": 68547530, "q20_bases": 66911960, "q30_bases": 64106086, "total_cycles": 61, "quality_curves": { "A":[39.4358,39.2671,38.9048,39.0291,38.9091,39.1227,39.067,38.8487,39.1277,39.123,39.0712,39.0844,39.13,39.1331,39.1114,39.1119,39.1088,39.0807,39.1111,39.1176,38.7153,39.0896,39.1222,39.1233,38.7062,39.0772,39.0943,38.632,39.0089,38.7509,39.0608,39.0539,39.006,39.0569,39.0441,39.0388,38.8946,38.7218,38.8254,38.9329,38.594,38.4411,38.7629,38.6576,38.527,38.2715,37.9565,37.7842,37.97,37.6884,37.4846,37.252,37.0645,36.7406,36.5849,36.3437,36.0961,35.8415,35.6352,35.0602,34.7846], 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"CTTGA":62774, "CTTGT":57740, "CTTGC":60365, "CTTGG":69300, "CTCAA":60328, "CTCAT":47504, "CTCAC":43058, "CTCAG":52609, "CTCTA":28299, "CTCTT":73050, "CTCTC":62529, "CTCTG":56391, "CTCCA":82614, "CTCCT":121661, "CTCCC":83171, "CTCCG":69990, "CTCGA":62257, "CTCGT":47090, "CTCGC":58053, "CTCGG":56429, "CTGAA":60566, "CTGAT":48694, "CTGAC":40645, "CTGAG":45428, "CTGTA":19078, "CTGTT":58976, "CTGTC":42340, "CTGTG":40241, "CTGCA":57257, "CTGCT":90839, "CTGCC":84076, "CTGCG":54119, "CTGGA":69645, "CTGGT":63415, "CTGGC":74361, "CTGGG":68847, "CCAAA":97321, "CCAAT":47645, "CCAAC":105771, "CCAAG":74997, "CCATA":36740, "CCATT":47746, "CCATC":80670, "CCATG":54036, "CCACA":86610, "CCACT":42240, "CCACC":127236, "CCACG":61186, "CCAGA":75883, "CCAGT":52104, "CCAGC":110679, "CCAGG":70170, "CCTAA":23685, "CCTAT":31539, "CCTAC":37677, "CCTAG":25705, "CCTTA":23740, "CCTTT":72054, "CCTTC":106189, "CCTTG":74272, "CCTCA":73235, "CCTCT":72082, "CCTCC":131860, "CCTCG":74307, "CCTGA":61987, "CCTGT":56437, "CCTGC":105628, "CCTGG":70437, "CCCAA":98814, "CCCAT":57994, "CCCAC":95786, "CCCAG":85692, "CCCTA":31290, "CCCTT":59010, "CCCTC":76257, "CCCTG":63953, "CCCCA":99943, "CCCCT":65412, "CCCCC":71969, "CCCCG":70272, "CCCGA":62548, "CCCGT":40649, "CCCGC":81498, "CCCGG":63895, "CCGAA":66019, "CCGAT":51207, "CCGAC":56984, "CCGAG":57184, "CCGTA":24796, "CCGTT":43115, "CCGTC":56499, "CCGTG":39518, "CCGCA":64976, "CCGCT":59879, "CCGCC":126342, "CCGCG":56981, "CCGGA":54907, "CCGGT":51641, "CCGGC":83037, "CCGGG":56793, "CGAAA":62653, "CGAAT":37218, "CGAAC":51727, "CGAAG":69968, "CGATA":29098, "CGATT":46109, "CGATC":59741, "CGATG":64961, "CGACA":50629, "CGACT":40748, "CGACC":63297, "CGACG":58676, "CGAGA":57853, "CGAGT":31797, "CGAGC":51469, "CGAGG":61152, "CGTAA":19855, "CGTAT":21658, "CGTAC":18476, "CGTAG":25414, "CGTTA":15101, "CGTTT":42962, "CGTTC":48227, "CGTTG":46558, "CGTCA":44124, "CGTCT":46873, "CGTCC":48243, "CGTCG":54037, "CGTGA":35188, "CGTGT":23621, "CGTGC":32887, "CGTGG":48260, "CGCAA":48117, "CGCAT":35035, "CGCAC":42692, "CGCAG":51268, "CGCTA":20957, "CGCTT":52864, "CGCTC":52600, "CGCTG":56723, "CGCCA":81762, "CGCCT":83889, "CGCCC":83135, "CGCCG":96613, "CGCGA":45759, "CGCGT":30738, "CGCGC":56458, "CGCGG":53047, "CGGAA":53985, "CGGAT":42689, "CGGAC":33170, "CGGAG":55972, "CGGTA":24464, "CGGTT":49829, "CGGTC":50140, "CGGTG":51708, "CGGCA":62802, "CGGCT":69414, "CGGCC":73564, "CGGCG":86700, "CGGGA":49601, "CGGGT":43497, "CGGGC":53924, "CGGGG":52460, "GAAAA":92011, "GAAAT":55292, "GAAAC":68923, "GAAAG":68982, "GAATA":34680, "GAATT":40088, "GAATC":50418, "GAATG":42198, "GAACA":61054, "GAACT":48771, "GAACC":69655, "GAACG":47102, "GAAGA":105066, "GAAGT":44325, "GAAGC":85294, "GAAGG":80219, "GATAA":33228, "GATAT":29355, "GATAC":25644, "GATAG":31542, "GATTA":25507, "GATTT":54430, "GATTC":51819, "GATTG":48452, "GATCA":58773, "GATCT":53628, "GATCC":56137, "GATCG":52451, "GATGA":73471, "GATGT":41228, "GATGC":51579, "GATGG":65991, "GACAA":59427, "GACAT":38126, "GACAC":33833, "GACAG":39255, "GACTA":20985, "GACTT":45077, "GACTC":32336, "GACTG":35535, "GACCA":60764, "GACCT":49754, "GACCC":57715, "GACCG":50352, "GACGA":65604, "GACGT":29444, "GACGC":44776, "GACGG":49027, "GAGAA":88480, "GAGAT":52308, "GAGAC":53731, "GAGAG":48210, "GAGTA":19144, "GAGTT":38924, "GAGTC":28767, "GAGTG":23613, "GAGCA":56840, "GAGCT":41606, "GAGCC":54736, "GAGCG":42653, "GAGGA":95887, "GAGGT":48886, "GAGGC":67097, "GAGGG":50850, "GTAAA":18282, "GTAAT":17018, "GTAAC":18184, "GTAAG":15181, "GTATA":11136, "GTATT":25139, "GTATC":24081, "GTATG":21994, "GTACA":19124, "GTACT":17874, "GTACC":20123, "GTACG":18330, "GTAGA":27405, "GTAGT":19239, "GTAGC":25277, "GTAGG":26214, "GTTAA":13963, "GTTAT":21931, "GTTAC":22140, "GTTAG":14563, "GTTTA":19001, "GTTTT":65770, "GTTTC":63149, "GTTTG":61753, "GTTCA":47800, "GTTCT":59273, "GTTCC":64944, "GTTCG":45792, "GTTGA":54769, "GTTGT":53099, "GTTGC":51737, "GTTGG":72756, "GTCAA":46579, "GTCAT":38802, "GTCAC":32732, "GTCAG":35435, "GTCTA":20570, "GTCTT":55650, "GTCTC":56822, "GTCTG":43463, "GTCCA":43403, "GTCCT":49163, "GTCCC":44204, "GTCCG":32773, "GTCGA":47346, "GTCGT":40578, "GTCGC":45040, "GTCGG":45195, "GTGAA":42173, "GTGAT":40375, "GTGAC":28600, "GTGAG":31796, "GTGTA":13935, "GTGTT":37772, "GTGTC":25511, "GTGTG":32159, "GTGCA":28279, "GTGCT":38549, "GTGCC":40326, "GTGCG":32435, "GTGGA":50355, "GTGGT":57232, "GTGGC":56286, "GTGGG":58490, "GCAAA":57922, "GCAAT":40418, "GCAAC":59485, "GCAAG":54038, "GCATA":26968, "GCATT":35843, "GCATC":52034, "GCATG":36710, "GCACA":38115, "GCACT":25641, "GCACC":64173, "GCACG":34460, "GCAGA":59841, "GCAGT":32193, "GCAGC":68385, "GCAGG":81532, "GCTAA":19109, "GCTAT":28638, "GCTAC":28752, "GCTAG":18244, "GCTTA":21671, "GCTTT":64351, "GCTTC":94733, "GCTTG":64220, "GCTCA":48571, "GCTCT":48936, "GCTCC":68957, "GCTCG":52066, "GCTGA":61222, "GCTGT":44674, "GCTGC":69225, "GCTGG":91348, "GCCAA":80499, "GCCAT":58126, "GCCAC":69648, "GCCAG":74543, "GCCTA":33346, "GCCTT":70045, "GCCTC":81241, "GCCTG":76556, "GCCCA":79960, "GCCCT":60213, "GCCCC":69754, "GCCCG":61126, "GCCGA":74947, "GCCGT":54228, "GCCGC":91386, "GCCGG":74483, "GCGAA":53329, "GCGAT":49078, "GCGAC":48201, "GCGAG":46822, "GCGTA":18961, "GCGTT":39303, "GCGTC":39187, "GCGTG":34913, "GCGCA":42455, "GCGCT":44942, "GCGCC":70071, "GCGCG":51834, "GCGGA":57106, "GCGGT":51518, "GCGGC":81259, "GCGGG":61075, "GGAAA":73000, "GGAAT":49631, "GGAAC":59835, "GGAAG":74101, "GGATA":33714, "GGATT":51705, "GGATC":51247, "GGATG":60029, "GGACA":42792, "GGACT":30438, "GGACC":40612, "GGACG":41575, "GGAGA":86826, "GGAGT":31266, "GGAGC":56697, "GGAGG":93485, "GGTAA":19559, "GGTAT":23200, "GGTAC":20369, "GGTAG":28916, "GGTTA":22617, "GGTTT":74233, "GGTTC":60668, "GGTTG":80459, "GGTCA":44474, "GGTCT":53747, "GGTCC":40108, "GGTCG":49471, "GGTGA":54580, "GGTGT":42890, "GGTGC":47632, "GGTGG":82693, "GGCAA":65466, "GGCAT":50110, "GGCAC":40137, "GGCAG":65367, "GGCTA":31900, "GGCTT":75685, "GGCTC":55574, "GGCTG":85215, "GGCCA":65226, "GGCCT":58577, "GGCCC":50663, "GGCCG":66619, "GGCGA":77394, "GGCGT":46915, "GGCGC":63973, "GGCGG":97516, "GGGAA":54464, "GGGAT":47289, "GGGAC":35210, "GGGAG":57017, "GGGTA":21642, "GGGTT":66978, "GGGTC":44276, "GGGTG":56105, "GGGCA":52768, "GGGCT":57271, "GGGCC":44606, "GGGCG":60926, "GGGGA":54665, "GGGGT":52296, "GGGGC":51713, "GGGGG":43930 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-5C_S61_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-5C_S61_R2_001.fastq.gz -o AM-AL-5C.trim.R1.fastq.gz -O AM-AL-5C.trim.R2.fastq.gz -m --merged_out AM-AL-5C.trim.merged.fastq.gz " }