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"CTCGC":60275, "CTCGG":59907, "CTGAA":337342, "CTGAT":56383, "CTGAC":46777, "CTGAG":64673, "CTGTA":25247, "CTGTT":62517, "CTGTC":45485, "CTGTG":43821, "CTGCA":67519, "CTGCT":91889, "CTGCC":85556, "CTGCG":55529, "CTGGA":83824, "CTGGT":68832, "CTGGC":77814, "CTGGG":83401, "CCAAA":124845, "CCAAT":58417, "CCAAC":124916, "CCAAG":110713, "CCATA":50140, "CCATT":56307, "CCATC":92830, "CCATG":61380, "CCACA":104404, "CCACT":47740, "CCACC":139738, "CCACG":66506, "CCAGA":170147, "CCAGT":174824, "CCAGC":115451, "CCAGG":74248, "CCTAA":31154, "CCTAT":36694, "CCTAC":42093, "CCTAG":51950, "CCTTA":34089, "CCTTT":80379, "CCTTC":112334, "CCTTG":79743, "CCTCA":87445, "CCTCT":77324, "CCTCC":135469, "CCTCG":78197, "CCTGA":76262, "CCTGT":57650, "CCTGC":104424, "CCTGG":73156, "CCCAA":124567, "CCCAT":67068, "CCCAC":104597, "CCCAG":114760, "CCCTA":41333, "CCCTT":64495, "CCCTC":80766, "CCCTG":66861, "CCCCA":117909, "CCCCT":68171, "CCCCC":79823, "CCCCG":72545, "CCCGA":75979, "CCCGT":43778, "CCCGC":82070, 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"CGGAT":49440, "CGGAC":38762, "CGGAG":82048, "CGGTA":31447, "CGGTT":56340, "CGGTC":53462, "CGGTG":56826, "CGGCA":76936, "CGGCT":69408, "CGGCC":73942, "CGGCG":90970, "CGGGA":61257, "CGGGT":46049, "CGGGC":56007, "CGGGG":55452, "GAAAA":123233, "GAAAT":71100, "GAAAC":86100, "GAAAG":101608, "GAATA":46211, "GAATT":51926, "GAATC":74200, "GAATG":53658, "GAACA":77423, "GAACT":274225, "GAACC":85634, "GAACG":56642, "GAAGA":779002, "GAAGT":52923, "GAAGC":98711, "GAAGG":94537, "GATAA":42906, "GATAT":36886, "GATAC":30762, "GATAG":56205, "GATTA":33916, "GATTT":66386, "GATTC":61535, "GATTG":58360, "GATCA":73126, "GATCT":63713, "GATCC":63586, "GATCG":776823, "GATGA":91242, "GATGT":47322, "GATGC":56515, "GATGG":77029, "GACAA":75333, "GACAT":45470, "GACAC":39127, "GACAG":63098, "GACTA":29208, "GACTT":49177, "GACTC":37700, "GACTG":41193, "GACCA":76983, "GACCT":56065, "GACCC":64445, "GACCG":57736, "GACGA":80668, "GACGT":32769, "GACGC":47905, "GACGG":54065, "GAGAA":131609, "GAGAT":228439, "GAGAC":65738, "GAGAG":72577, "GAGTA":25833, "GAGTT":46683, "GAGTC":32688, "GAGTG":28326, "GAGCA":580563, "GAGCT":47092, "GAGCC":62671, "GAGCG":47990, "GAGGA":120242, "GAGGT":55340, "GAGGC":74381, "GAGGG":56544, "GTAAA":22990, "GTAAT":20400, "GTAAC":21364, "GTAAG":22631, "GTATA":14256, "GTATT":30070, "GTATC":28724, "GTATG":25593, "GTACA":22606, "GTACT":19778, "GTACC":22375, "GTACG":19473, "GTAGA":85901, "GTAGT":22059, "GTAGC":27902, "GTAGG":28898, "GTTAA":17442, "GTTAT":26031, "GTTAC":22011, "GTTAG":29694, "GTTTA":25453, "GTTTT":77513, "GTTTC":72697, "GTTTG":72135, "GTTCA":56463, "GTTCT":66658, "GTTCC":68443, "GTTCG":49598, "GTTGA":67428, "GTTGT":60823, "GTTGC":56858, "GTTGG":81115, "GTCAA":57559, "GTCAT":45317, "GTCAC":111089, "GTCAG":50698, "GTCTA":28992, "GTCTT":64233, "GTCTC":60418, "GTCTG":356467, "GTCCA":50159, "GTCCT":52322, "GTCCC":43870, "GTCCG":34339, "GTCGA":56706, "GTCGT":45769, "GTCGC":47275, "GTCGG":49179, "GTGAA":53609, "GTGAT":45722, "GTGAC":33314, "GTGAG":43638, "GTGTA":18219, "GTGTT":43089, "GTGTC":28874, "GTGTG":35817, "GTGCA":34556, "GTGCT":40979, "GTGCC":41461, "GTGCG":34621, "GTGGA":61254, "GTGGT":63548, "GTGGC":59089, "GTGGG":63270, "GCAAA":76034, "GCAAT":47946, "GCAAC":68369, "GCAAG":77907, "GCATA":35843, "GCATT":41238, "GCATC":57803, "GCATG":41742, "GCACA":506192, "GCACT":29085, "GCACC":69205, "GCACG":36642, "GCAGA":143858, "GCAGT":35955, "GCAGC":73856, "GCAGG":89630, "GCTAA":24339, "GCTAT":31928, "GCTAC":30708, "GCTAG":40348, "GCTTA":30163, "GCTTT":71733, "GCTTC":97843, "GCTTG":71002, "GCTCA":56392, "GCTCT":53257, "GCTCC":69263, "GCTCG":54513, "GCTGA":73472, "GCTGT":47804, "GCTGC":70337, "GCTGG":95529, "GCCAA":99099, "GCCAT":66045, "GCCAC":75856, "GCCAG":104852, "GCCTA":45168, "GCCTT":74313, "GCCTC":82743, "GCCTG":76959, "GCCCA":93625, "GCCCT":62114, "GCCCC":71022, "GCCCG":62363, "GCCGA":87615, "GCCGT":57188, "GCCGC":91037, "GCCGG":78259, "GCGAA":68459, "GCGAT":56584, "GCGAC":53261, "GCGAG":85494, "GCGTA":24359, "GCGTT":43292, "GCGTC":41748, "GCGTG":37017, "GCGCA":50750, "GCGCT":47355, "GCGCC":69409, "GCGCG":54035, "GCGGA":69679, "GCGGT":55350, "GCGGC":82225, "GCGGG":64464, "GGAAA":98161, "GGAAT":62091, "GGAAC":70456, "GGAAG":719994, "GGATA":47234, "GGATT":61522, "GGATC":58804, "GGATG":69568, "GGACA":54620, "GGACT":34913, "GGACC":46427, "GGACG":47813, "GGAGA":169137, "GGAGT":37296, "GGAGC":63981, "GGAGG":106583, "GGTAA":24869, "GGTAT":27701, "GGTAC":21292, "GGTAG":50249, "GGTTA":31016, "GGTTT":85774, "GGTTC":66874, "GGTTG":90512, "GGTCA":53044, "GGTCT":59742, "GGTCC":41423, "GGTCG":53938, "GGTGA":65405, "GGTGT":46808, "GGTGC":50603, "GGTGG":88566, "GGCAA":83173, "GGCAT":55407, "GGCAC":44567, "GGCAG":98242, "GGCTA":41784, "GGCTT":80709, "GGCTC":57516, "GGCTG":87978, "GGCCA":77698, "GGCCT":60057, "GGCCC":52530, "GGCCG":69278, "GGCGA":92303, "GGCGT":49555, "GGCGC":65193, "GGCGG":101970, "GGGAA":70176, "GGGAT":54818, "GGGAC":40166, "GGGAG":83247, "GGGTA":28802, "GGGTT":74520, "GGGTC":46805, "GGGTG":59502, "GGGCA":64935, "GGGCT":58757, "GGGCC":46682, "GGGCG":63793, "GGGGA":67220, "GGGGT":56861, "GGGGC":54076, "GGGGG":149998 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1250126, "total_bases": 76257686, "q20_bases": 74018787, "q30_bases": 70716117, "total_cycles": 61, "quality_curves": { "A":[39.3429,39.1672,39.1264,38.9607,39.106,39.1662,39.1191,38.9236,39.1508,39.1316,39.1482,39.1269,39.1639,39.138,39.1382,39.1238,39.1282,39.1424,39.1621,39.136,38.4937,39.0919,39.1252,39.1531,38.5416,39.0836,39.142,38.4902,39.0016,38.7357,39.1131,39.1147,39.0568,38.9346,39.0876,38.8329,38.5696,38.512,38.81,38.7922,38.332,38.7585,38.6811,38.5647,38.3477,38.0199,37.5858,37.2726,37.474,37.1228,36.7789,36.5159,36.1975,35.7345,35.5055,35.0988,34.7918,34.4209,34.0327,33.4382,33.0019], 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"CTTGA":69090, "CTTGT":58906, "CTTGC":61029, "CTTGG":73268, "CTCAA":66838, "CTCAT":50615, "CTCAC":45041, "CTCAG":54139, "CTCTA":30031, "CTCTT":76488, "CTCTC":64496, "CTCTG":57114, "CTCCA":84038, "CTCCT":116590, "CTCCC":81090, "CTCCG":66565, "CTCGA":63313, "CTCGT":48530, "CTCGC":55641, "CTCGG":55066, "CTGAA":67606, "CTGAT":52230, "CTGAC":43194, "CTGAG":49779, "CTGTA":20428, "CTGTT":58222, "CTGTC":42514, "CTGTG":40811, "CTGCA":58553, "CTGCT":85701, "CTGCC":79929, "CTGCG":51365, "CTGGA":73106, "CTGGT":63641, "CTGGC":71739, "CTGGG":67681, "CCAAA":109241, "CCAAT":54012, "CCAAC":116259, "CCAAG":82046, "CCATA":40853, "CCATT":52184, "CCATC":85353, "CCATG":56669, "CCACA":90923, "CCACT":44828, "CCACC":128130, "CCACG":61138, "CCAGA":83864, "CCAGT":51481, "CCAGC":106226, "CCAGG":67966, "CCTAA":26864, "CCTAT":34172, "CCTAC":38713, "CCTAG":28126, "CCTTA":26045, "CCTTT":75296, "CCTTC":104715, "CCTTG":74480, "CCTCA":77319, "CCTCT":71662, "CCTCC":125374, "CCTCG":72386, "CCTGA":66684, "CCTGT":53701, "CCTGC":96640, "CCTGG":67729, "CCCAA":109007, "CCCAT":61936, "CCCAC":96616, "CCCAG":84135, "CCCTA":32664, "CCCTT":60120, "CCCTC":74433, "CCCTG":62178, "CCCCA":101215, "CCCCT":62968, "CCCCC":70499, "CCCCG":66349, "CCCGA":64140, "CCCGT":39617, "CCCGC":75059, "CCCGG":61757, "CCGAA":72143, "CCGAT":53492, "CCGAC":56732, "CCGAG":58673, "CCGTA":26157, "CCGTT":43754, "CCGTC":55352, "CCGTG":38640, "CCGCA":63593, "CCGCT":56833, "CCGCC":115369, "CCGCG":53119, "CCGGA":58292, "CCGGT":49750, "CCGGC":77759, "CCGGG":54216, "CGAAA":72262, "CGAAT":42387, "CGAAC":56495, "CGAAG":74093, "CGATA":32822, "CGATT":50092, "CGATC":62391, "CGATG":66778, "CGACA":52998, "CGACT":39444, "CGACC":64275, "CGACG":57640, "CGAGA":63800, "CGAGT":33631, "CGAGC":52546, "CGAGG":63717, "CGTAA":21363, "CGTAT":23240, "CGTAC":18717, "CGTAG":26570, "CGTTA":16580, "CGTTT":45619, "CGTTC":48163, "CGTTG":48112, "CGTCA":46730, "CGTCT":47782, "CGTCC":45733, "CGTCG":52491, "CGTGA":36391, "CGTGT":24493, "CGTGC":31851, "CGTGG":47281, "CGCAA":50082, "CGCAT":36127, "CGCAC":40506, "CGCAG":50582, "CGCTA":21980, "CGCTT":53071, "CGCTC":49731, "CGCTG":55173, "CGCCA":79509, "CGCCT":77608, "CGCCC":76027, "CGCCG":88150, "CGCGA":45894, "CGCGT":29703, "CGCGC":52267, "CGCGG":49767, "CGGAA":60031, "CGGAT":45059, "CGGAC":34736, "CGGAG":58453, "CGGTA":23972, "CGGTT":51382, "CGGTC":48487, "CGGTG":51719, "CGGCA":62700, "CGGCT":64616, "CGGCC":67734, "CGGCG":81385, "CGGGA":52102, "CGGGT":42212, "CGGGC":51114, "CGGGG":50135, "GAAAA":111700, "GAAAT":65930, "GAAAC":80380, "GAAAG":81329, "GAATA":40612, "GAATT":47663, "GAATC":57650, "GAATG":49574, "GAACA":68271, "GAACT":53486, "GAACC":78440, "GAACG":52267, "GAAGA":120317, "GAAGT":48983, "GAAGC":91532, "GAAGG":88191, "GATAA":38984, "GATAT":34074, "GATAC":28787, "GATAG":35839, "GATTA":28884, "GATTT":61529, "GATTC":57106, "GATTG":54098, "GATCA":64878, "GATCT":57930, "GATCC":58586, "GATCG":55994, "GATGA":82128, "GATGT":44236, "GATGC":52773, "GATGG":71349, "GACAA":67457, "GACAT":42163, "GACAC":36257, "GACAG":43301, "GACTA":23746, "GACTT":46400, "GACTC":34859, "GACTG":38333, "GACCA":66682, "GACCT":51716, "GACCC":59753, "GACCG":52543, "GACGA":71142, "GACGT":30346, "GACGC":43985, "GACGG":50194, "GAGAA":105124, "GAGAT":59882, "GAGAC":61039, "GAGAG":55613, "GAGTA":21504, "GAGTT":43334, "GAGTC":30506, "GAGTG":26476, "GAGCA":60985, "GAGCT":43393, "GAGCC":57317, "GAGCG":43191, "GAGGA":106433, "GAGGT":50968, "GAGGC":68687, "GAGGG":52419, "GTAAA":20828, "GTAAT":18921, "GTAAC":19775, "GTAAG":16732, "GTATA":12343, "GTATT":28191, "GTATC":26530, "GTATG":23967, "GTACA":19989, "GTACT":18440, "GTACC":20734, "GTACG":18129, "GTAGA":30135, "GTAGT":20715, "GTAGC":25910, "GTAGG":27030, "GTTAA":15466, "GTTAT":24494, "GTTAC":20757, "GTTAG":15662, "GTTTA":20792, "GTTTT":72196, "GTTTC":67312, "GTTTG":67235, "GTTCA":50677, "GTTCT":62180, "GTTCC":63519, "GTTCG":45618, "GTTGA":60402, "GTTGT":57021, "GTTGC":53081, "GTTGG":75535, "GTCAA":50937, "GTCAT":41947, "GTCAC":33838, "GTCAG":36560, "GTCTA":22666, "GTCTT":59403, "GTCTC":57761, "GTCTG":45304, "GTCCA":44011, "GTCCT":48538, "GTCCC":41519, "GTCCG":31513, "GTCGA":48669, "GTCGT":41990, "GTCGC":43516, "GTCGG":44464, "GTGAA":46725, "GTGAT":42242, "GTGAC":30944, "GTGAG":33407, "GTGTA":14900, "GTGTT":39911, "GTGTC":26603, "GTGTG":33275, "GTGCA":30098, "GTGCT":37820, "GTGCC":38657, "GTGCG":31744, "GTGGA":53155, "GTGGT":58323, "GTGGC":54844, "GTGGG":57960, "GCAAA":65723, "GCAAT":44176, "GCAAC":63095, "GCAAG":57441, "GCATA":28956, "GCATT":38171, "GCATC":53094, "GCATG":38670, "GCACA":39852, "GCACT":26735, "GCACC":63580, "GCACG":32955, "GCAGA":65970, "GCAGT":33543, "GCAGC":68102, "GCAGG":82030, "GCTAA":21066, "GCTAT":29562, "GCTAC":28864, "GCTAG":19634, "GCTTA":23090, "GCTTT":66677, "GCTTC":90898, "GCTTG":66277, "GCTCA":48945, "GCTCT":49067, "GCTCC":64133, "GCTCG":49761, "GCTGA":64813, "GCTGT":44424, "GCTGC":65469, "GCTGG":87747, "GCCAA":85729, "GCCAT":60889, "GCCAC":69933, "GCCAG":72467, "GCCTA":34818, "GCCTT":69639, "GCCTC":77135, "GCCTG":70956, "GCCCA":79885, "GCCCT":57805, "GCCCC":65223, "GCCCG":56700, "GCCGA":73865, "GCCGT":52735, "GCCGC":82512, "GCCGG":70578, "GCGAA":57648, "GCGAT":51632, "GCGAC":48635, "GCGAG":48720, "GCGTA":18903, "GCGTT":39754, "GCGTC":37893, "GCGTG":33607, "GCGCA":41103, "GCGCT":43109, "GCGCC":63341, "GCGCG":48768, "GCGGA":58126, "GCGGT":50368, "GCGGC":74710, "GCGGG":58497, "GGAAA":85892, "GGAAT":57438, "GGAAC":65227, "GGAAG":81740, "GGATA":38508, "GGATT":57445, "GGATC":54021, "GGATG":64122, "GGACA":46650, "GGACT":32451, "GGACC":42558, "GGACG":43360, "GGAGA":99809, "GGAGT":34549, "GGAGC":58581, "GGAGG":96985, "GGTAA":21410, "GGTAT":25641, "GGTAC":19908, "GGTAG":29222, "GGTTA":24356, "GGTTT":79530, "GGTTC":61974, "GGTTG":83696, "GGTCA":45081, "GGTCT":55144, "GGTCC":38401, "GGTCG":48495, "GGTGA":57151, "GGTGT":43409, "GGTGC":46875, "GGTGG":80205, "GGCAA":71206, "GGCAT":51389, "GGCAC":40411, "GGCAG":65781, "GGCTA":32371, "GGCTT":75146, "GGCTC":53441, "GGCTG":81413, "GGCCA":64975, "GGCCT":55768, "GGCCC":48377, "GGCCG":62580, "GGCGA":78838, "GGCGT":45377, "GGCGC":59147, "GGCGG":91822, "GGGAA":60284, "GGGAT":50607, "GGGAC":37340, "GGGAG":62430, "GGGTA":22391, "GGGTT":68992, "GGGTC":43109, "GGGTG":53739, "GGGCA":53662, "GGGCT":54899, "GGGCC":42926, "GGGCG":58040, "GGGGA":57705, "GGGGT":50888, "GGGGC":49775, "GGGGG":43294 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-5A_S59_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-5A_S59_R2_001.fastq.gz -o AM-AL-5A.trim.R1.fastq.gz -O AM-AL-5A.trim.R2.fastq.gz -m --merged_out AM-AL-5A.trim.merged.fastq.gz " }