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"CTCGC":53711, "CTCGG":53467, "CTGAA":289320, "CTGAT":52415, "CTGAC":43207, "CTGAG":60957, "CTGTA":25985, "CTGTT":65758, "CTGTC":43151, "CTGTG":42863, "CTGCA":66393, "CTGCT":85961, "CTGCC":77856, "CTGCG":51380, "CTGGA":84746, "CTGGT":68465, "CTGGC":72310, "CTGGG":88005, "CCAAA":115794, "CCAAT":55820, "CCAAC":104043, "CCAAG":100942, "CCATA":50321, "CCATT":56240, "CCATC":80211, "CCATG":58540, "CCACA":91772, "CCACT":45547, "CCACC":118273, "CCACG":56792, "CCAGA":148093, "CCAGT":153545, "CCAGC":107116, "CCAGG":68464, "CCTAA":33525, "CCTAT":38109, "CCTAC":42345, "CCTAG":48197, "CCTTA":36115, "CCTTT":82542, "CCTTC":105989, "CCTTG":74987, "CCTCA":79742, "CCTCT":74283, "CCTCC":122496, "CCTCG":67671, "CCTGA":69910, "CCTGT":57131, "CCTGC":95499, "CCTGG":69495, "CCCAA":108493, "CCCAT":61220, "CCCAC":88174, "CCCAG":99375, "CCCTA":42023, "CCCTT":62666, "CCCTC":75181, "CCCTG":63843, "CCCCA":99447, "CCCCT":66112, "CCCCC":67782, "CCCCG":62629, "CCCGA":60601, "CCCGT":38457, "CCCGC":72463, "CCCGG":56235, 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"CGGAC":33896, "CGGAG":72254, "CGGTA":30122, "CGGTT":54039, "CGGTC":45791, "CGGTG":52293, "CGGCA":69322, "CGGCT":64040, "CGGCC":64444, "CGGCG":82805, "CGGGA":52035, "CGGGT":41127, "CGGGC":49291, "CGGGG":52210, "GAAAA":127216, "GAAAT":72420, "GAAAC":79645, "GAAAG":98256, "GAATA":47387, "GAATT":53229, "GAATC":77250, "GAATG":49761, "GAACA":72040, "GAACT":232008, "GAACC":78026, "GAACG":47638, "GAAGA":682975, "GAAGT":53599, "GAAGC":91948, "GAAGG":90072, "GATAA":46216, "GATAT":38156, "GATAC":30929, "GATAG":55949, "GATTA":36621, "GATTT":69874, "GATTC":58178, "GATTG":55453, "GATCA":58630, "GATCT":54567, "GATCC":52655, "GATCG":673262, "GATGA":80770, "GATGT":47392, "GATGC":53706, "GATGG":70543, "GACAA":69493, "GACAT":45327, "GACAC":36323, "GACAG":57297, "GACTA":29259, "GACTT":50699, "GACTC":35735, "GACTG":39293, "GACCA":67844, "GACCT":51992, "GACCC":59773, "GACCG":48548, "GACGA":69762, "GACGT":31948, "GACGC":44561, "GACGG":48600, "GAGAA":110582, "GAGAT":205337, "GAGAC":59956, "GAGAG":65649, "GAGTA":25310, "GAGTT":46387, "GAGTC":30187, "GAGTG":26602, "GAGCA":499428, "GAGCT":44677, "GAGCC":55550, "GAGCG":42992, "GAGGA":112906, "GAGGT":53631, "GAGGC":70403, "GAGGG":56196, "GTAAA":27012, "GTAAT":22269, "GTAAC":23107, "GTAAG":24307, "GTATA":16305, "GTATT":30674, "GTATC":27421, "GTATG":26764, "GTACA":22047, "GTACT":20365, "GTACC":21926, "GTACG":19298, "GTAGA":79431, "GTAGT":23417, "GTAGC":28448, "GTAGG":29939, "GTTAA":22759, "GTTAT":29594, "GTTAC":25411, "GTTAG":57204, "GTTTA":30523, "GTTTT":85330, "GTTTC":72263, "GTTTG":72574, "GTTCA":55930, "GTTCT":66459, "GTTCC":64320, "GTTCG":47054, "GTTGA":69703, "GTTGT":59613, "GTTGC":54466, "GTTGG":77831, "GTCAA":55888, "GTCAT":41674, "GTCAC":101327, "GTCAG":46207, "GTCTA":30213, "GTCTT":63281, "GTCTC":55850, "GTCTG":301449, "GTCCA":48906, "GTCCT":47295, "GTCCC":38908, "GTCCG":30934, "GTCGA":49662, "GTCGT":40568, "GTCGC":43666, "GTCGG":43879, "GTGAA":55700, "GTGAT":43039, "GTGAC":30792, "GTGAG":40615, "GTGTA":18706, "GTGTT":43727, "GTGTC":27355, "GTGTG":32679, "GTGCA":32364, "GTGCT":40269, "GTGCC":38898, "GTGCG":30261, "GTGGA":59103, "GTGGT":59475, "GTGGC":56042, "GTGGG":59748, "GCAAA":75070, "GCAAT":44878, "GCAAC":61822, "GCAAG":72055, "GCATA":36593, "GCATT":42994, "GCATC":53041, "GCATG":39598, "GCACA":431208, "GCACT":28928, "GCACC":59805, "GCACG":35083, "GCAGA":127678, "GCAGT":36052, "GCAGC":68053, "GCAGG":84303, "GCTAA":24979, "GCTAT":35069, "GCTAC":31562, "GCTAG":37671, "GCTTA":33045, "GCTTT":75297, "GCTTC":93756, "GCTTG":67302, "GCTCA":52506, "GCTCT":50473, "GCTCC":64529, "GCTCG":48535, "GCTGA":70091, "GCTGT":47701, "GCTGC":65559, "GCTGG":93105, "GCCAA":91336, "GCCAT":60409, "GCCAC":67301, "GCCAG":93247, "GCCTA":44415, "GCCTT":70091, "GCCTC":76167, "GCCTG":71570, "GCCCA":80834, "GCCCT":58306, "GCCCC":63699, "GCCCG":53897, "GCCGA":76949, "GCCGT":51872, "GCCGC":80438, "GCCGG":68239, "GCGAA":63684, "GCGAT":50243, "GCGAC":48743, "GCGAG":58406, "GCGTA":24527, "GCGTT":73852, "GCGTC":39362, "GCGTG":34069, "GCGCA":45989, "GCGCT":44205, "GCGCC":61716, "GCGCG":47444, "GCGGA":63648, "GCGGT":51354, "GCGGC":74766, "GCGGG":59248, "GGAAA":96422, "GGAAT":58597, "GGAAC":63095, "GGAAG":628192, "GGATA":49244, "GGATT":60468, "GGATC":47878, "GGATG":64622, "GGACA":51153, "GGACT":35046, "GGACC":41259, "GGACG":43483, "GGAGA":159636, "GGAGT":37228, "GGAGC":59031, "GGAGG":103045, "GGTAA":27099, "GGTAT":29338, "GGTAC":21465, "GGTAG":49652, "GGTTA":34561, "GGTTT":87837, "GGTTC":67124, "GGTTG":84259, "GGTCA":49326, "GGTCT":58397, "GGTCC":37399, "GGTCG":46490, "GGTGA":63348, "GGTGT":44953, "GGTGC":46756, "GGTGG":83888, "GGCAA":77868, "GGCAT":52941, "GGCAC":42285, "GGCAG":90167, "GGCTA":42525, "GGCTT":81285, "GGCTC":54686, "GGCTG":85142, "GGCCA":66259, "GGCCT":53780, "GGCCC":45820, "GGCCG":61230, "GGCGA":85735, "GGCGT":47698, "GGCGC":59728, "GGCGG":94501, "GGGAA":65756, "GGGAT":50658, "GGGAC":36886, "GGGAG":81175, "GGGTA":29987, "GGGTT":72745, "GGGTC":44636, "GGGTG":56042, "GGGCA":61221, "GGGCT":57937, "GGGCC":42082, "GGGCG":57979, "GGGGA":64743, "GGGGT":54425, "GGGGC":52304, "GGGGG":229776 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1178580, "total_bases": 71893380, "q20_bases": 69832949, "q30_bases": 66720266, "total_cycles": 61, "quality_curves": { "A":[39.2814,39.2445,39.1947,39.0229,39.1323,39.0688,39.1246,38.9655,39.1546,39.1557,39.166,39.1351,39.1778,39.1837,39.1554,39.163,39.181,39.1637,39.1764,39.1704,38.0394,39.1117,39.1419,39.1776,38.1678,39.0267,39.0902,38.0311,38.8157,38.5172,39.114,39.1269,39.0629,39.1108,39.0314,38.975,39.0668,39.0334,39.0003,38.8446,38.8951,38.7933,38.7432,38.65,38.493,38.2309,37.5216,37.2313,37.8636,37.5268,37.3219,37.0528,36.8473,36.3997,36.2902,35.9659,35.7523,35.4693,35.2758,34.711,34.5936], 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"CTTGA":65592, "CTTGT":58145, "CTTGC":56572, "CTTGG":69712, "CTCAA":62539, "CTCAT":47504, "CTCAC":40117, "CTCAG":49622, "CTCTA":31210, "CTCTT":76065, "CTCTC":58873, "CTCTG":53434, "CTCCA":80686, "CTCCT":109885, "CTCCC":74645, "CTCCG":58133, "CTCGA":53123, "CTCGT":41391, "CTCGC":48974, "CTCGG":48746, "CTGAA":66312, "CTGAT":48257, "CTGAC":39563, "CTGAG":46814, "CTGTA":21259, "CTGTT":60716, "CTGTC":39620, "CTGTG":39107, "CTGCA":57601, "CTGCT":79261, "CTGCC":71635, "CTGCG":46674, "CTGGA":73212, "CTGGT":62660, "CTGGC":65651, "CTGGG":64163, "CCAAA":101409, "CCAAT":51236, "CCAAC":95735, "CCAAG":74378, "CCATA":41708, "CCATT":51730, "CCATC":73122, "CCATG":53532, "CCACA":79541, "CCACT":41717, "CCACC":107788, "CCACG":51312, "CCAGA":77260, "CCAGT":48607, "CCAGC":97402, "CCAGG":61534, "CCTAA":28898, "CCTAT":35032, "CCTAC":38389, "CCTAG":27581, "CCTTA":28729, "CCTTT":76549, "CCTTC":97354, "CCTTG":68852, "CCTCA":70194, "CCTCT":68780, "CCTCC":112842, "CCTCG":62061, "CCTGA":60784, "CCTGT":52677, "CCTGC":87238, "CCTGG":62613, "CCCAA":94096, "CCCAT":56468, "CCCAC":80024, "CCCAG":74178, "CCCTA":33966, "CCCTT":57845, "CCCTC":68372, "CCCTG":57728, "CCCCA":85415, "CCCCT":60277, "CCCCC":58864, "CCCCG":56992, "CCCGA":51133, "CCCGT":34137, "CCCGC":64867, "CCCGG":50420, "CCGAA":60404, "CCGAT":46038, "CCGAC":47900, "CCGAG":49285, "CCGTA":25094, "CCGTT":40080, "CCGTC":47130, "CCGTG":35288, "CCGCA":56267, "CCGCT":51466, "CCGCC":99170, "CCGCG":44394, "CCGGA":48311, "CCGGT":41280, "CCGGC":65722, "CCGGG":45999, "CGAAA":65329, "CGAAT":38333, "CGAAC":48035, "CGAAG":65679, "CGATA":31770, "CGATT":46604, "CGATC":47293, "CGATG":56788, "CGACA":47069, "CGACT":37721, "CGACC":53529, "CGACG":49161, "CGAGA":52465, "CGAGT":27542, "CGAGC":44454, "CGAGG":55559, "CGTAA":22830, "CGTAT":20801, "CGTAC":17592, "CGTAG":26179, "CGTTA":17361, "CGTTT":44856, "CGTTC":41958, "CGTTG":43949, "CGTCA":41131, "CGTCT":42739, "CGTCC":40199, "CGTCG":44403, "CGTGA":32792, "CGTGT":22485, "CGTGC":28677, "CGTGG":41857, "CGCAA":46134, "CGCAT":32708, "CGCAC":33822, "CGCAG":46079, "CGCTA":21474, "CGCTT":50193, "CGCTC":43520, "CGCTG":50912, "CGCCA":71303, "CGCCT":70577, "CGCCC":63900, "CGCCG":75012, "CGCGA":38869, "CGCGT":25744, "CGCGC":44670, "CGCGG":42262, "CGGAA":53111, "CGGAT":39591, "CGGAC":30001, "CGGAG":51566, "CGGTA":23333, "CGGTT":49248, "CGGTC":41029, "CGGTG":46346, "CGGCA":56513, "CGGCT":58895, "CGGCC":57816, "CGGCG":72779, "CGGGA":43613, "CGGGT":37506, "CGGGC":43787, "CGGGG":46067, "GAAAA":115188, "GAAAT":66984, "GAAAC":73792, "GAAAG":78536, "GAATA":41100, "GAATT":48738, "GAATC":52116, "GAATG":45707, "GAACA":62733, "GAACT":50193, "GAACC":70331, "GAACG":43171, "GAAGA":110524, "GAAGT":49151, "GAAGC":84559, "GAAGG":82275, "GATAA":41517, "GATAT":35235, "GATAC":28319, "GATAG":37344, "GATTA":31531, "GATTT":64166, "GATTC":53365, "GATTG":51154, "GATCA":51225, "GATCT":49212, "GATCC":47365, "GATCG":42565, "GATGA":72283, "GATGT":43622, "GATGC":49137, "GATGG":64600, "GACAA":62084, "GACAT":41473, "GACAC":33326, "GACAG":39330, "GACTA":24100, "GACTT":47250, "GACTC":32764, "GACTG":35635, "GACCA":58639, "GACCT":47519, "GACCC":54379, "GACCG":43696, "GACGA":60312, "GACGT":28949, "GACGC":40108, "GACGG":44230, "GAGAA":97727, "GAGAT":55795, "GAGAC":55059, "GAGAG":49866, "GAGTA":20932, "GAGTT":42085, "GAGTC":27687, "GAGTG":24165, "GAGCA":54519, "GAGCT":40328, "GAGCC":50108, "GAGCG":37857, "GAGGA":98891, "GAGGT":48748, "GAGGC":63842, "GAGGG":50404, "GTAAA":24250, "GTAAT":20482, "GTAAC":20999, "GTAAG":17819, "GTATA":13816, "GTATT":28154, "GTATC":24983, "GTATG":24864, "GTACA":19070, "GTACT":18806, "GTACC":19670, "GTACG":17502, "GTAGA":31959, "GTAGT":21599, "GTAGC":26003, "GTAGG":27360, "GTTAA":20454, "GTTAT":27401, "GTTAC":23693, "GTTAG":17501, "GTTTA":25283, "GTTTT":79161, "GTTTC":66659, "GTTTG":67322, "GTTCA":49876, "GTTCT":61727, "GTTCC":58987, "GTTCG":42984, "GTTGA":62036, "GTTGT":55116, "GTTGC":50048, "GTTGG":71690, "GTCAA":48997, "GTCAT":38390, "GTCAC":30827, "GTCAG":34383, "GTCTA":23559, "GTCTT":58417, "GTCTC":52513, "GTCTG":43314, "GTCCA":42577, "GTCCT":43238, "GTCCC":35961, "GTCCG":27891, "GTCGA":42348, "GTCGT":36207, "GTCGC":39223, "GTCGG":39032, "GTGAA":48119, "GTGAT":39152, "GTGAC":28044, "GTGAG":31120, "GTGTA":15323, "GTGTT":40224, "GTGTC":24884, "GTGTG":29601, "GTGCA":27913, "GTGCT":36620, "GTGCC":35621, "GTGCG":27365, "GTGGA":50895, "GTGGT":54347, "GTGGC":50863, "GTGGG":53821, "GCAAA":64577, "GCAAT":41224, "GCAAC":56732, "GCAAG":52771, "GCATA":30022, "GCATT":39236, "GCATC":48330, "GCATG":35800, "GCACA":35778, "GCACT":26357, "GCACC":53868, "GCACG":30722, "GCAGA":62867, "GCAGT":33133, "GCAGC":61721, "GCAGG":75882, "GCTAA":21333, "GCTAT":31875, "GCTAC":29036, "GCTAG":19230, "GCTTA":26107, "GCTTT":69319, "GCTTC":86437, "GCTTG":61954, "GCTCA":45403, "GCTCT":45891, "GCTCC":59238, "GCTCG":43395, "GCTGA":60945, "GCTGT":43426, "GCTGC":59844, "GCTGG":84403, "GCCAA":77814, "GCCAT":55120, "GCCAC":61193, "GCCAG":64918, "GCCTA":34731, "GCCTT":64318, "GCCTC":70415, "GCCTG":65091, "GCCCA":68330, "GCCCT":53160, "GCCCC":57434, "GCCCG":47751, "GCCGA":64110, "GCCGT":46687, "GCCGC":71435, "GCCGG":60269, "GCGAA":52900, "GCGAT":45040, "GCGAC":43866, "GCGAG":42005, "GCGTA":19302, "GCGTT":36352, "GCGTC":34967, "GCGTG":30460, "GCGCA":37169, "GCGCT":39585, "GCGCC":55395, "GCGCG":42044, "GCGGA":52352, "GCGGT":45908, "GCGGC":66961, "GCGGG":52534, "GGAAA":84196, "GGAAT":53875, "GGAAC":57637, "GGAAG":74778, "GGATA":40376, "GGATT":55677, "GGATC":43283, "GGATG":58848, "GGACA":43055, "GGACT":31895, "GGACC":37541, "GGACG":38553, "GGAGA":95644, "GGAGT":33817, "GGAGC":53139, "GGAGG":92078, "GGTAA":23169, "GGTAT":26756, "GGTAC":19514, "GGTAG":30676, "GGTTA":27977, "GGTTT":81300, "GGTTC":62033, "GGTTG":77141, "GGTCA":42495, "GGTCT":53586, "GGTCC":33994, "GGTCG":41007, "GGTGA":54432, "GGTGT":41238, "GGTGC":42752, "GGTGG":75442, "GGCAA":66220, "GGCAT":48338, "GGCAC":38093, "GGCAG":61949, "GGCTA":33501, "GGCTT":74898, "GGCTC":49693, "GGCTG":77579, "GGCCA":54657, "GGCCT":49017, "GGCCC":40741, "GGCCG":53724, "GGCGA":72084, "GGCGT":42995, "GGCGC":52888, "GGCGG":83838, "GGGAA":55972, "GGGAT":45988, "GGGAC":33237, "GGGAG":60342, "GGGTA":23336, "GGGTT":66929, "GGGTC":40995, "GGGTG":50087, "GGGCA":51008, "GGGCT":52945, "GGGCC":37603, "GGGCG":51176, "GGGGA":54445, "GGGGT":48471, "GGGGC":47081, "GGGGG":40072 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-4C_S58_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-4C_S58_R2_001.fastq.gz -o AM-AL-4C.trim.R1.fastq.gz -O AM-AL-4C.trim.R2.fastq.gz -m --merged_out AM-AL-4C.trim.merged.fastq.gz " }