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"CGGAT":48156, "CGGAC":36642, "CGGAG":72810, "CGGTA":31813, "CGGTT":56307, "CGGTC":47965, "CGGTG":53731, "CGGCA":74991, "CGGCT":65794, "CGGCC":66152, "CGGCG":87291, "CGGGA":52773, "CGGGT":40501, "CGGGC":50364, "CGGGG":48462, "GAAAA":144058, "GAAAT":82056, "GAAAC":86376, "GAAAG":106910, "GAATA":53850, "GAATT":62232, "GAATC":64312, "GAATG":54669, "GAACA":75842, "GAACT":279457, "GAACC":78093, "GAACG":51462, "GAAGA":756463, "GAAGT":58830, "GAAGC":95040, "GAAGG":90744, "GATAA":50610, "GATAT":43185, "GATAC":33646, "GATAG":59776, "GATTA":41440, "GATTT":81502, "GATTC":65801, "GATTG":97430, "GATCA":63528, "GATCT":90619, "GATCC":55710, "GATCG":745560, "GATGA":86292, "GATGT":52406, "GATGC":58641, "GATGG":73030, "GACAA":74469, "GACAT":50317, "GACAC":37816, "GACAG":60635, "GACTA":32112, "GACTT":56356, "GACTC":38603, "GACTG":41890, "GACCA":68646, "GACCT":55166, "GACCC":55561, "GACCG":50845, "GACGA":73135, "GACGT":35336, "GACGC":48965, "GACGG":52049, "GAGAA":113591, "GAGAT":218755, "GAGAC":58460, 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"GTGTT":43766, "GTGTC":29549, "GTGTG":31631, "GTGCA":34661, "GTGCT":41644, "GTGCC":40421, "GTGCG":31765, "GTGGA":61554, "GTGGT":55616, "GTGGC":55608, "GTGGG":55489, "GCAAA":82625, "GCAAT":51276, "GCAAC":64422, "GCAAG":78645, "GCATA":40838, "GCATT":48719, "GCATC":58407, "GCATG":43787, "GCACA":488818, "GCACT":31748, "GCACC":58346, "GCACG":37779, "GCAGA":135393, "GCAGT":39316, "GCAGC":68306, "GCAGG":77922, "GCTAA":28243, "GCTAT":37859, "GCTAC":33356, "GCTAG":40269, "GCTTA":37287, "GCTTT":83596, "GCTTC":98751, "GCTTG":72241, "GCTCA":57354, "GCTCT":54617, "GCTCC":62992, "GCTCG":51483, "GCTGA":75536, "GCTGT":47801, "GCTGC":67875, "GCTGG":90169, "GCCAA":96336, "GCCAT":65922, "GCCAC":67171, "GCCAG":96498, "GCCTA":47660, "GCCTT":77914, "GCCTC":76041, "GCCTG":71296, "GCCCA":80442, "GCCCT":59253, "GCCCC":59115, "GCCCG":55825, "GCCGA":83283, "GCCGT":55869, "GCCGC":84800, "GCCGG":69540, "GCGAA":70007, "GCGAT":56112, "GCGAC":51843, "GCGAG":61507, "GCGTA":27241, "GCGTT":45158, "GCGTC":44442, "GCGTG":36149, "GCGCA":50529, "GCGCT":48608, "GCGCC":66402, "GCGCG":53846, "GCGGA":65887, "GCGGT":52715, "GCGGC":78383, "GCGGG":56604, "GGAAA":105305, "GGAAT":64248, "GGAAC":64717, "GGAAG":694128, "GGATA":51161, "GGATT":65588, "GGATC":50509, "GGATG":66219, "GGACA":52585, "GGACT":36348, "GGACC":41089, "GGACG":44594, "GGAGA":155074, "GGAGT":38658, "GGAGC":58295, "GGAGG":90353, "GGTAA":29154, "GGTAT":31055, "GGTAC":21167, "GGTAG":49803, "GGTTA":36530, "GGTTT":89222, "GGTTC":66555, "GGTTG":79415, "GGTCA":52208, "GGTCT":57564, "GGTCC":37140, "GGTCG":48295, "GGTGA":64241, "GGTGT":43066, "GGTGC":46820, "GGTGG":78390, "GGCAA":84499, "GGCAT":57805, "GGCAC":44176, "GGCAG":90151, "GGCTA":44991, "GGCTT":84580, "GGCTC":54665, "GGCTG":81531, "GGCCA":68360, "GGCCT":54451, "GGCCC":45629, "GGCCG":62392, "GGCGA":89254, "GGCGT":50734, "GGCGC":63447, "GGCGG":91562, "GGGAA":68234, "GGGAT":51666, "GGGAC":36210, "GGGAG":74617, "GGGTA":29486, "GGGTT":68638, "GGGTC":41723, "GGGTG":53469, "GGGCA":61464, "GGGCT":55611, "GGGCC":41539, "GGGCG":57245, "GGGGA":60184, "GGGGT":54730, "GGGGC":48201, "GGGGG":305667 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1271232, "total_bases": 77545152, "q20_bases": 74928201, "q30_bases": 71464254, "total_cycles": 61, "quality_curves": { "A":[39.4872,39.1951,38.9849,39.1,39.1444,39.1533,39.1804,38.9279,39.2002,39.1825,39.2283,39.1947,39.2264,39.22,39.1889,39.1753,39.2084,39.1836,39.2028,39.1688,37.6646,39.0906,39.1669,39.186,37.7403,39.0099,39.113,37.6431,38.8353,38.1487,39.1434,39.1265,39.0644,38.4942,38.5164,39.0144,37.9452,37.6498,38.1196,38.7942,37.5631,37.2405,38.6288,38.4761,38.3302,37.9259,36.8976,36.6734,37.522,37.2127,36.9041,36.6044,36.2661,35.7237,35.6552,35.218,34.8629,34.4879,34.113,33.4054,33.0031], 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"CTTGA":75047, "CTTGT":60581, "CTTGC":61875, "CTTGG":72107, "CTCAA":68664, "CTCAT":51213, "CTCAC":40909, "CTCAG":51741, "CTCTA":33933, "CTCTT":84322, "CTCTC":60635, "CTCTG":54910, "CTCCA":80881, "CTCCT":98761, "CTCCC":67160, "CTCCG":56857, "CTCGA":56532, "CTCGT":44022, "CTCGC":50966, "CTCGG":50363, "CTGAA":73529, "CTGAT":53514, "CTGAC":43060, "CTGAG":47973, "CTGTA":22985, "CTGTT":60539, "CTGTC":41730, "CTGTG":38085, "CTGCA":59799, "CTGCT":77322, "CTGCC":71134, "CTGCG":49215, "CTGGA":74439, "CTGGT":60479, "CTGGC":66820, "CTGGG":59455, "CCAAA":103761, "CCAAT":54653, "CCAAC":90756, "CCAAG":76144, "CCATA":44588, "CCATT":57297, "CCATC":75160, "CCATG":56649, "CCACA":75580, "CCACT":43020, "CCACC":96727, "CCACG":50870, "CCAGA":78353, "CCAGT":49738, "CCAGC":91868, "CCAGG":59844, "CCTAA":30992, "CCTAT":36751, "CCTAC":37371, "CCTAG":27671, "CCTTA":31414, "CCTTT":81720, "CCTTC":99629, "CCTTG":71540, "CCTCA":70357, "CCTCT":69936, "CCTCC":99216, "CCTCG":62234, "CCTGA":63695, "CCTGT":49968, "CCTGC":80801, "CCTGG":60574, "CCCAA":89330, "CCCAT":56153, "CCCAC":72443, "CCCAG":69446, "CCCTA":32120, "CCCTT":59424, "CCCTC":63381, "CCCTG":54562, "CCCCA":76709, "CCCCT":53905, "CCCCC":52231, "CCCCG":51920, "CCCGA":51349, "CCCGT":34319, "CCCGC":61759, "CCCGG":47753, "CCGAA":63691, "CCGAT":50756, "CCGAC":50049, "CCGAG":50309, "CCGTA":26538, "CCGTT":43884, "CCGTC":49226, "CCGTG":36211, "CCGCA":56625, "CCGCT":53728, "CCGCC":96477, "CCGCG":47101, "CCGGA":48610, "CCGGT":40872, "CCGGC":64420, "CCGGG":43625, "CGAAA":72107, "CGAAT":43976, "CGAAC":50487, "CGAAG":68406, "CGATA":34693, "CGATT":53157, "CGATC":52486, "CGATG":60858, "CGACA":48984, "CGACT":39937, "CGACC":53723, "CGACG":51766, "CGAGA":55483, "CGAGT":30406, "CGAGC":46309, "CGAGG":54707, "CGTAA":24502, "CGTAT":23290, "CGTAC":18943, "CGTAG":28272, "CGTTA":20082, "CGTTT":50971, "CGTTC":45728, "CGTTG":47370, "CGTCA":45758, "CGTCT":46365, "CGTCC":40779, "CGTCG":48331, "CGTGA":35813, "CGTGT":24302, "CGTGC":30215, "CGTGG":41746, "CGCAA":49702, "CGCAT":36591, "CGCAC":34511, "CGCAG":47120, "CGCTA":23212, "CGCTT":55183, "CGCTC":46391, "CGCTG":54561, "CGCCA":74213, "CGCCT":72680, "CGCCC":62703, "CGCCG":79747, "CGCGA":42346, "CGCGT":29092, "CGCGC":49685, "CGCGG":44969, "CGGAA":56251, "CGGAT":42766, "CGGAC":32010, "CGGAG":50195, "CGGTA":24171, "CGGTT":50160, "CGGTC":42039, "CGGTG":47073, "CGGCA":59511, "CGGCT":58815, "CGGCC":57738, "CGGCG":75316, "CGGGA":42990, "CGGGT":35957, "CGGGC":44078, "CGGGG":41806, "GAAAA":128503, "GAAAT":75129, "GAAAC":78998, "GAAAG":83533, "GAATA":46248, "GAATT":56907, "GAATC":58180, "GAATG":49932, "GAACA":64979, "GAACT":55319, "GAACC":69944, "GAACG":45848, "GAAGA":116230, "GAAGT":53466, "GAAGC":85858, "GAAGG":81790, "GATAA":44968, "GATAT":39318, "GATAC":30666, "GATAG":38324, "GATTA":35110, "GATTT":74031, "GATTC":59804, "GATTG":55260, "GATCA":54508, "GATCT":54843, "GATCC":49679, "GATCG":47747, "GATGA":75710, "GATGT":47175, "GATGC":53202, "GATGG":65846, "GACAA":65324, "GACAT":45547, "GACAC":34268, "GACAG":40884, "GACTA":25972, "GACTT":52060, "GACTC":34907, "GACTG":37550, "GACCA":58451, "GACCT":49585, "GACCC":50171, "GACCG":44645, "GACGA":62349, "GACGT":31432, "GACGC":43439, "GACGG":46329, "GAGAA":99228, "GAGAT":58664, "GAGAC":52998, "GAGAG":50249, "GAGTA":22354, "GAGTT":45800, "GAGTC":29642, "GAGTG":25360, "GAGCA":54550, "GAGCT":42876, "GAGCC":50884, "GAGCG":40142, "GAGGA":90711, "GAGGT":47260, "GAGGC":60964, "GAGGG":46124, "GTAAA":27664, "GTAAT":23089, "GTAAC":22067, "GTAAG":19723, "GTATA":15643, "GTATT":32136, "GTATC":27573, "GTATG":26634, "GTACA":20441, "GTACT":19882, "GTACC":19624, "GTACG":18186, "GTAGA":33473, "GTAGT":22627, "GTAGC":27172, "GTAGG":27251, "GTTAA":23124, "GTTAT":29901, "GTTAC":23339, "GTTAG":18843, "GTTTA":29044, "GTTTT":85936, "GTTTC":72071, "GTTTG":67779, "GTTCA":54872, "GTTCT":63939, "GTTCC":59484, "GTTCG":44121, "GTTGA":66252, "GTTGT":54159, "GTTGC":51885, "GTTGG":67675, "GTCAA":55192, "GTCAT":41833, "GTCAC":32487, "GTCAG":37091, "GTCTA":26580, "GTCTT":63493, "GTCTC":50959, "GTCTG":45582, "GTCCA":44738, "GTCCT":42993, "GTCCC":34384, "GTCCG":29369, "GTCGA":46068, "GTCGT":37428, "GTCGC":42849, "GTCGG":40843, "GTGAA":51029, "GTGAT":40685, "GTGAC":29975, "GTGAG":31596, "GTGTA":16759, "GTGTT":39578, "GTGTC":26438, "GTGTG":28117, "GTGCA":29115, "GTGCT":37413, "GTGCC":36406, "GTGCG":28024, "GTGGA":52039, "GTGGT":49721, "GTGGC":49526, "GTGGG":48338, "GCAAA":70555, "GCAAT":46355, "GCAAC":58264, "GCAAG":56608, "GCATA":32936, "GCATT":44156, "GCATC":52292, "GCATG":39345, "GCACA":36861, "GCACT":28470, "GCACC":51610, "GCACG":32568, "GCAGA":64742, "GCAGT":35739, "GCAGC":60976, "GCAGG":68846, "GCTAA":23838, "GCTAT":34178, "GCTAC":30123, "GCTAG":19901, "GCTTA":29115, "GCTTT":76571, "GCTTC":89902, "GCTTG":65760, "GCTCA":49102, "GCTCT":49205, "GCTCC":56896, "GCTCG":44811, "GCTGA":64617, "GCTGT":43115, "GCTGC":60817, "GCTGG":80044, "GCCAA":80270, "GCCAT":59937, "GCCAC":60198, "GCCAG":64836, "GCCTA":36818, "GCCTT":71347, "GCCTC":69262, "GCCTG":63875, "GCCCA":67005, "GCCCT":53059, "GCCCC":52400, "GCCCG":48352, "GCCGA":68348, "GCCGT":49674, "GCCGC":73367, "GCCGG":60184, "GCGAA":57534, "GCGAT":49483, "GCGAC":46015, "GCGAG":43648, "GCGTA":21305, "GCGTT":40319, "GCGTC":38907, "GCGTG":31687, "GCGCA":40187, "GCGCT":42944, "GCGCC":58458, "GCGCG":46566, "GCGGA":53859, "GCGGT":46511, "GCGGC":68828, "GCGGG":49080, "GGAAA":90701, "GGAAT":58524, "GGAAC":58017, "GGAAG":75971, "GGATA":41302, "GGATT":59609, "GGATC":44920, "GGATG":59325, "GGACA":43464, "GGACT":32669, "GGACC":36676, "GGACG":38706, "GGAGA":87849, "GGAGT":34684, "GGAGC":51418, "GGAGG":78645, "GGTAA":24569, "GGTAT":28031, "GGTAC":18862, "GGTAG":29272, "GGTTA":28949, "GGTTT":81281, "GGTTC":60509, "GGTTG":71074, "GGTCA":43799, "GGTCT":52060, "GGTCC":33170, "GGTCG":41813, "GGTGA":54199, "GGTGT":38152, "GGTGC":41442, "GGTGG":67952, "GGCAA":70789, "GGCAT":52100, "GGCAC":38955, "GGCAG":59559, "GGCTA":34575, "GGCTT":77326, "GGCTC":48766, "GGCTG":72920, "GGCCA":54931, "GGCCT":48682, "GGCCC":39960, "GGCCG":53683, "GGCGA":73760, "GGCGT":45148, "GGCGC":55131, "GGCGG":79620, "GGGAA":56866, "GGGAT":46242, "GGGAC":32080, "GGGAG":52849, "GGGTA":22415, "GGGTT":61273, "GGGTC":37483, "GGGTG":44147, "GGGCA":50156, "GGGCT":50146, "GGGCC":36525, "GGGCG":49718, "GGGGA":49116, "GGGGT":42343, "GGGGC":42704, "GGGGG":35355 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-4B_S57_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-4B_S57_R2_001.fastq.gz -o AM-AL-4B.trim.R1.fastq.gz -O AM-AL-4B.trim.R2.fastq.gz -m --merged_out AM-AL-4B.trim.merged.fastq.gz " }