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"GCGTT":45965, "GCGTC":45545, "GCGTG":39124, "GCGCA":51083, "GCGCT":50384, "GCGCC":71445, "GCGCG":54057, "GCGGA":69304, "GCGGT":58157, "GCGGC":84585, "GCGGG":66050, "GGAAA":100082, "GGAAT":61679, "GGAAC":69175, "GGAAG":592857, "GGATA":52169, "GGATT":65578, "GGATC":53572, "GGATG":70809, "GGACA":53798, "GGACT":37656, "GGACC":44945, "GGACG":47527, "GGAGA":161847, "GGAGT":40898, "GGAGC":63483, "GGAGG":109089, "GGTAA":29862, "GGTAT":32911, "GGTAC":24552, "GGTAG":53208, "GGTTA":37494, "GGTTT":95757, "GGTTC":75010, "GGTTG":94716, "GGTCA":55167, "GGTCT":67065, "GGTCC":43294, "GGTCG":54275, "GGTGA":70787, "GGTGT":50450, "GGTGC":53747, "GGTGG":94980, "GGCAA":84841, "GGCAT":59617, "GGCAC":46968, "GGCAG":95064, "GGCTA":47623, "GGCTT":91140, "GGCTC":62191, "GGCTG":95934, "GGCCA":74509, "GGCCT":62923, "GGCCC":53178, "GGCCG":70080, "GGCGA":93746, "GGCGT":54405, "GGCGC":67959, "GGCGG":104601, "GGGAA":69719, "GGGAT":55560, "GGGAC":40156, "GGGAG":83573, "GGGTA":32944, "GGGTT":81604, "GGGTC":51207, "GGGTG":63186, "GGGCA":67169, "GGGCT":65071, "GGGCC":47847, "GGGCG":64963, "GGGGA":69022, "GGGGT":62607, "GGGGC":58172, "GGGGG":178332 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1266035, "total_bases": 77228135, "q20_bases": 75185713, "q30_bases": 71896437, "total_cycles": 61, "quality_curves": { "A":[39.3365,39.2213,39.2015,38.9635,38.9471,38.9765,39.0657,38.9772,39.1155,39.0802,39.1203,39.1316,39.1435,39.1274,39.1242,39.1028,39.1292,39.1335,39.1436,39.1211,38.3853,39.051,39.1065,39.1365,38.4315,39.0404,39.0864,38.3298,38.8849,38.6548,39.083,39.0937,39.0309,39.0793,39.0508,39.0264,38.9688,38.4186,38.3547,38.9427,38.5979,38.8044,38.758,38.6528,38.5173,38.2653,37.7846,37.5565,37.9827,37.714,37.4792,37.2462,37.0486,36.6115,36.5582,36.2611,36.0299,35.7245,35.5135,34.926,34.6625], 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"CTTGA":70864, "CTTGT":65052, "CTTGC":62790, "CTTGG":75641, "CTCAA":67663, "CTCAT":51963, "CTCAC":44640, "CTCAG":54416, "CTCTA":34568, "CTCTT":83948, "CTCTC":66681, "CTCTG":59408, "CTCCA":89540, "CTCCT":125429, "CTCCC":85940, "CTCCG":66417, "CTCGA":58598, "CTCGT":46658, "CTCGC":55820, "CTCGG":54729, "CTGAA":70770, "CTGAT":52708, "CTGAC":43039, "CTGAG":49491, "CTGTA":23534, "CTGTT":67017, "CTGTC":44614, "CTGTG":43417, "CTGCA":63468, "CTGCT":89624, "CTGCC":82023, "CTGCG":51790, "CTGGA":77567, "CTGGT":68762, "CTGGC":73524, "CTGGG":69066, "CCAAA":108215, "CCAAT":55297, "CCAAC":105232, "CCAAG":79936, "CCATA":44592, "CCATT":56008, "CCATC":80329, "CCATG":58465, "CCACA":87342, "CCACT":46555, "CCACC":119037, "CCACG":56280, "CCAGA":81365, "CCAGT":54430, "CCAGC":107376, "CCAGG":68684, "CCTAA":31988, "CCTAT":39013, "CCTAC":41691, "CCTAG":29437, "CCTTA":32339, "CCTTT":84232, "CCTTC":109347, "CCTTG":77044, "CCTCA":77207, "CCTCT":78445, "CCTCC":130567, "CCTCG":71178, "CCTGA":66491, "CCTGT":59457, "CCTGC":100024, "CCTGG":70121, "CCCAA":102013, "CCCAT":62386, "CCCAC":88490, "CCCAG":81424, "CCCTA":37324, "CCCTT":64827, "CCCTC":77354, "CCCTG":65318, "CCCCA":93624, "CCCCT":68510, "CCCCC":66258, "CCCCG":64300, "CCCGA":55570, "CCCGT":39298, "CCCGC":73537, "CCCGG":56601, "CCGAA":65354, "CCGAT":50150, "CCGAC":52792, "CCGAG":53165, "CCGTA":28151, "CCGTT":45630, "CCGTC":54379, "CCGTG":39540, "CCGCA":61744, "CCGCT":58313, "CCGCC":113622, "CCGCG":50290, "CCGGA":52617, "CCGGT":47159, "CCGGC":74090, "CCGGG":52074, "CGAAA":69660, "CGAAT":41509, "CGAAC":53170, "CGAAG":69032, "CGATA":33869, "CGATT":49377, "CGATC":52665, "CGATG":61245, "CGACA":50977, "CGACT":41122, "CGACC":58794, "CGACG":53493, "CGAGA":55693, "CGAGT":30350, "CGAGC":48308, "CGAGG":57738, "CGTAA":24841, "CGTAT":23639, "CGTAC":19322, "CGTAG":29374, "CGTTA":18562, "CGTTT":49307, "CGTTC":46667, "CGTTG":49018, "CGTCA":46451, "CGTCT":47636, "CGTCC":46666, "CGTCG":50304, "CGTGA":35402, "CGTGT":25291, "CGTGC":32085, "CGTGG":45807, "CGCAA":49365, "CGCAT":35840, "CGCAC":38264, "CGCAG":50236, "CGCTA":23684, "CGCTT":56185, "CGCTC":49040, "CGCTG":57113, "CGCCA":79784, "CGCCT":82490, "CGCCC":72926, "CGCCG":87037, "CGCGA":42695, "CGCGT":29289, "CGCGC":49835, "CGCGG":47473, "CGGAA":55537, "CGGAT":42926, "CGGAC":32414, "CGGAG":54501, "CGGTA":26342, "CGGTT":53695, "CGGTC":47195, "CGGTG":51681, "CGGCA":61055, "CGGCT":65953, "CGGCC":66169, "CGGCG":80569, "CGGGA":46588, "CGGGT":42138, "CGGGC":49135, "CGGGG":51209, "GAAAA":118881, "GAAAT":69394, "GAAAC":76803, "GAAAG":80273, "GAATA":42741, "GAATT":50131, "GAATC":55416, "GAATG":47949, "GAACA":67618, "GAACT":53862, "GAACC":75206, "GAACG":46556, "GAAGA":112423, "GAAGT":52035, "GAAGC":88741, "GAAGG":85417, "GATAA":43071, "GATAT":37173, "GATAC":30251, "GATAG":39186, "GATTA":32790, "GATTT":67470, "GATTC":56938, "GATTG":54047, "GATCA":55410, "GATCT":53955, "GATCC":52040, "GATCG":46888, "GATGA":75098, "GATGT":47892, "GATGC":53153, "GATGG":68748, "GACAA":65538, "GACAT":43253, "GACAC":35355, "GACAG":41698, "GACTA":25239, "GACTT":50282, "GACTC":35136, "GACTG":37821, "GACCA":62749, "GACCT":51406, "GACCC":57766, "GACCG":46908, "GACGA":63632, "GACGT":30890, "GACGC":43755, "GACGG":47753, "GAGAA":99022, "GAGAT":57945, "GAGAC":57056, "GAGAG":51697, "GAGTA":22049, "GAGTT":45232, "GAGTC":30268, "GAGTG":26125, "GAGCA":57678, "GAGCT":43117, "GAGCC":53765, "GAGCG":40363, "GAGGA":99042, "GAGGT":51530, "GAGGC":67106, "GAGGG":52895, "GTAAA":25808, "GTAAT":21947, "GTAAC":22608, "GTAAG":19241, "GTATA":14967, "GTATT":30696, "GTATC":28356, "GTATG":26435, "GTACA":20483, "GTACT":20242, "GTACC":22024, "GTACG":19068, "GTAGA":33809, "GTAGT":24006, "GTAGC":29332, "GTAGG":30097, "GTTAA":21528, "GTTAT":29357, "GTTAC":25797, "GTTAG":18910, "GTTTA":26621, "GTTTT":84594, "GTTTC":72171, "GTTTG":72709, "GTTCA":54495, "GTTCT":66808, "GTTCC":65630, "GTTCG":47604, "GTTGA":66370, "GTTGT":60662, "GTTGC":56463, "GTTGG":78390, "GTCAA":52692, "GTCAT":42106, "GTCAC":33934, "GTCAG":37890, "GTCTA":26191, "GTCTT":63328, "GTCTC":59380, "GTCTG":47844, "GTCCA":47162, "GTCCT":49376, "GTCCC":41160, "GTCCG":31894, "GTCGA":46263, "GTCGT":40371, "GTCGC":46944, "GTCGG":43737, "GTGAA":50343, "GTGAT":42217, "GTGAC":30799, "GTGAG":33291, "GTGTA":16998, "GTGTT":43462, "GTGTC":28171, "GTGTG":32236, "GTGCA":29805, "GTGCT":40957, "GTGCC":40590, "GTGCG":30734, "GTGGA":54285, "GTGGT":60418, "GTGGC":56012, "GTGGG":58814, "GCAAA":67910, "GCAAT":44371, "GCAAC":61087, "GCAAG":55847, "GCATA":31588, "GCATT":43034, "GCATC":53184, "GCATG":39067, "GCACA":39307, "GCACT":28657, "GCACC":60622, "GCACG":34009, "GCAGA":65826, "GCAGT":35756, "GCAGC":66340, "GCAGG":80784, "GCTAA":22958, "GCTAT":35237, "GCTAC":32156, "GCTAG":20698, "GCTTA":28048, "GCTTT":75015, "GCTTC":96423, "GCTTG":68707, "GCTCA":50686, "GCTCT":50703, "GCTCC":66115, "GCTCG":48522, "GCTGA":65229, "GCTGT":48080, "GCTGC":67035, "GCTGG":92666, "GCCAA":84760, "GCCAT":60196, "GCCAC":68144, "GCCAG":71178, "GCCTA":38319, "GCCTT":72110, "GCCTC":80343, "GCCTG":74887, "GCCCA":76232, "GCCCT":60011, "GCCCC":65070, "GCCCG":54125, "GCCGA":70507, "GCCGT":54095, "GCCGC":81393, "GCCGG":68055, "GCGAA":56480, "GCGAT":48243, "GCGAC":48281, "GCGAG":44895, "GCGTA":21310, "GCGTT":40178, "GCGTC":39400, "GCGTG":33513, "GCGCA":40973, "GCGCT":43723, "GCGCC":62862, "GCGCG":46411, "GCGGA":55601, "GCGGT":50967, "GCGGC":73802, "GCGGG":57438, "GGAAA":85587, "GGAAT":55320, "GGAAC":61652, "GGAAG":77967, "GGATA":42084, "GGATT":58763, "GGATC":47374, "GGATG":62326, "GGACA":44525, "GGACT":33164, "GGACC":39667, "GGACG":40841, "GGAGA":96982, "GGAGT":36063, "GGAGC":55347, "GGAGG":95434, "GGTAA":24643, "GGTAT":28730, "GGTAC":21346, "GGTAG":33992, "GGTTA":29915, "GGTTT":86445, "GGTTC":67249, "GGTTG":85061, "GGTCA":46272, "GGTCT":59974, "GGTCC":38159, "GGTCG":47151, "GGTGA":59466, "GGTGT":44693, "GGTGC":47732, "GGTGG":83924, "GGCAA":70523, "GGCAT":52686, "GGCAC":41143, "GGCAG":65577, "GGCTA":36963, "GGCTT":81513, "GGCTC":55116, "GGCTG":84906, "GGCCA":60804, "GGCCT":55763, "GGCCC":46715, "GGCCG":60217, "GGCGA":77708, "GGCGT":47266, "GGCGC":58760, "GGCGG":90993, "GGGAA":57908, "GGGAT":48892, "GGGAC":35101, "GGGAG":61594, "GGGTA":24995, "GGGTT":73627, "GGGTC":45724, "GGGTG":55192, "GGGCA":54882, "GGGCT":58118, "GGGCC":41970, "GGGCG":56215, "GGGGA":56498, "GGGGT":53814, "GGGGC":51254, "GGGGG":43277 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-4A_S56_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-4A_S56_R2_001.fastq.gz -o AM-AL-4A.trim.R1.fastq.gz -O AM-AL-4A.trim.R2.fastq.gz -m --merged_out AM-AL-4A.trim.merged.fastq.gz " }