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"GATGC":103116, "GATGG":128238, "GACAA":123222, "GACAT":84571, "GACAC":67419, "GACAG":95771, "GACTA":50846, "GACTT":91798, "GACTC":67288, "GACTG":74012, "GACCA":119775, "GACCT":97751, "GACCC":105330, "GACCG":96604, "GACGA":128481, "GACGT":62448, "GACGC":90753, "GACGG":98628, "GAGAA":185546, "GAGAT":278894, "GAGAC":104586, "GAGAG":112569, "GAGTA":46615, "GAGTT":84684, "GAGTC":57624, "GAGTG":50656, "GAGCA":573291, "GAGCT":85882, "GAGCC":104881, "GAGCG":88818, "GAGGA":192455, "GAGGT":99639, "GAGGC":132917, "GAGGG":102826, "GTAAA":51712, "GTAAT":42233, "GTAAC":43709, "GTAAG":43361, "GTATA":30557, "GTATT":55779, "GTATC":52944, "GTATG":48844, "GTACA":42730, "GTACT":39569, "GTACC":43554, "GTACG":40285, "GTAGA":110047, "GTAGT":43784, "GTAGC":58386, "GTAGG":56303, "GTTAA":42596, "GTTAT":51160, "GTTAC":47158, "GTTAG":44119, "GTTTA":51507, "GTTTT":132920, "GTTTC":122030, "GTTTG":113566, "GTTCA":104273, "GTTCT":113581, "GTTCC":117655, "GTTCG":87888, "GTTGA":120756, "GTTGT":96864, "GTTGC":98130, "GTTGG":123899, "GTCAA":105034, "GTCAT":77450, "GTCAC":151097, "GTCAG":83958, "GTCTA":54123, "GTCTT":110718, "GTCTC":97236, "GTCTG":346816, "GTCCA":91180, "GTCCT":87561, "GTCCC":76422, "GTCCG":64429, "GTCGA":95108, "GTCGT":78224, "GTCGC":91821, "GTCGG":87176, "GTGAA":101709, "GTGAT":80180, "GTGAC":60311, "GTGAG":72146, "GTGTA":34928, "GTGTT":71397, "GTGTC":51798, "GTGTG":54122, "GTGCA":59559, "GTGCT":76068, "GTGCC":76371, "GTGCG":61844, "GTGGA":105356, "GTGGT":96879, "GTGGC":100324, "GTGGG":105437, "GCAAA":130325, "GCAAT":84150, "GCAAC":111311, "GCAAG":127275, "GCATA":66199, "GCATT":79201, "GCATC":103978, "GCATG":74674, "GCACA":481284, "GCACT":56584, "GCACC":113964, "GCACG":74359, "GCAGA":191356, "GCAGT":69145, "GCAGC":131618, "GCAGG":158137, "GCTAA":45208, "GCTAT":67334, "GCTAC":63690, "GCTAG":54170, "GCTTA":56500, "GCTTT":131662, "GCTTC":170089, "GCTTG":121884, "GCTCA":99581, "GCTCT":94264, "GCTCC":123954, "GCTCG":99368, "GCTGA":125358, "GCTGT":87967, "GCTGC":127731, "GCTGG":168182, 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"GGCAA":140227, "GGCAT":101149, "GGCAC":81289, "GGCAG":153019, "GGCTA":74906, "GGCTT":142088, "GGCTC":103512, "GGCTG":151590, "GGCCA":127505, "GGCCT":106935, "GGCCC":93441, "GGCCG":130623, "GGCGA":161025, "GGCGT":94561, "GGCGC":124413, "GGCGG":178744, "GGGAA":117950, "GGGAT":94586, "GGGAC":72871, "GGGAG":139755, "GGGTA":52809, "GGGTT":118877, "GGGTC":80653, "GGGTG":104794, "GGGCA":113305, "GGGCT":104319, "GGGCC":84957, "GGGCG":116317, "GGGGA":117299, "GGGGT":103563, "GGGGC":98335, "GGGGG":368377 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1984173, "total_bases": 121034553, "q20_bases": 117985747, "q30_bases": 112995336, "total_cycles": 61, "quality_curves": { 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"CCTTC":160835, "CCTTG":114203, "CCTCA":111614, "CCTCT":112852, "CCTCC":185658, "CCTCG":104861, "CCTGA":99557, "CCTGT":83516, "CCTGC":149048, "CCTGG":108144, "CCCAA":139961, "CCCAT":90031, "CCCAC":127547, "CCCAG":123476, "CCCTA":56108, "CCCTT":95863, "CCCTC":111756, "CCCTG":99899, "CCCCA":136843, "CCCCT":98325, "CCCCC":99994, "CCCCG":101213, "CCCGA":88218, "CCCGT":60595, "CCCGC":117863, "CCCGG":89886, "CCGAA":98111, "CCGAT":81569, "CCGAC":85813, "CCGAG":85793, "CCGTA":43267, "CCGTT":67951, "CCGTC":85822, "CCGTG":63688, "CCGCA":97208, "CCGCT":91651, "CCGCC":178221, "CCGCG":85395, "CCGGA":85206, "CCGGT":73773, "CCGGC":120544, "CCGGG":82706, "CGAAA":103401, "CGAAT":62328, "CGAAC":77341, "CGAAG":107988, "CGATA":54390, "CGATT":76697, "CGATC":84970, "CGATG":98600, "CGACA":81327, "CGACT":64457, "CGACC":93838, "CGACG":90159, "CGAGA":88707, "CGAGT":47417, "CGAGC":77053, "CGAGG":92627, "CGTAA":38198, "CGTAT":34636, "CGTAC":31205, "CGTAG":45161, "CGTTA":29688, "CGTTT":72298, "CGTTC":73037, "CGTTG":72104, "CGTCA":74084, "CGTCT":70581, "CGTCC":73020, "CGTCG":81538, "CGTGA":56982, "CGTGT":37606, "CGTGC":52780, "CGTGG":69650, "CGCAA":76661, "CGCAT":56438, "CGCAC":61839, "CGCAG":79232, "CGCTA":37468, "CGCTT":85682, "CGCTC":79649, "CGCTG":91085, "CGCCA":125191, "CGCCT":123665, "CGCCC":115757, "CGCCG":144271, "CGCGA":70008, "CGCGT":48685, "CGCGC":88379, "CGCGG":79893, "CGGAA":87107, "CGGAT":67479, "CGGAC":53818, "CGGAG":86071, "CGGTA":42672, "CGGTT":76276, "CGGTC":73454, "CGGTG":79672, "CGGCA":97923, "CGGCT":100170, "CGGCC":107968, "CGGCG":133380, "CGGGA":75318, "CGGGT":61926, "CGGGC":81889, "CGGGG":79397, "GAAAA":166875, "GAAAT":104612, "GAAAC":111958, "GAAAG":121037, "GAATA":64405, "GAATT":75288, "GAATC":84630, "GAATG":70699, "GAACA":97580, "GAACT":81713, "GAACC":107002, "GAACG":73135, "GAAGA":169500, "GAAGT":79181, "GAAGC":132711, "GAAGG":130707, "GATAA":66313, "GATAT":58147, "GATAC":47763, "GATAG":61275, "GATTA":49207, "GATTT":98729, "GATTC":87110, "GATTG":81682, "GATCA":86373, "GATCT":83017, "GATCC":80597, "GATCG":75877, "GATGA":117533, "GATGT":70053, "GATGC":83353, "GATGG":104031, "GACAA":98709, "GACAT":67662, "GACAC":54722, "GACAG":64377, "GACTA":38295, "GACTT":76154, "GACTC":53641, "GACTG":59526, "GACCA":93734, "GACCT":78582, "GACCC":86464, "GACCG":77077, "GACGA":99728, "GACGT":49273, "GACGC":72124, "GACGG":78233, "GAGAA":146779, "GAGAT":89440, "GAGAC":84660, "GAGAG":80248, "GAGTA":35245, "GAGTT":68024, "GAGTC":45758, "GAGTG":40575, "GAGCA":90138, "GAGCT":66741, "GAGCC":83047, "GAGCG":68051, "GAGGA":150645, "GAGGT":76940, "GAGGC":105463, "GAGGG":80437, "GTAAA":41388, "GTAAT":34118, "GTAAC":34053, "GTAAG":29716, "GTATA":23585, "GTATT":44808, "GTATC":42863, "GTATG":38850, "GTACA":32633, "GTACT":31468, "GTACC":35014, "GTACG":31323, "GTAGA":53246, "GTAGT":34597, "GTAGC":45640, "GTAGG":45137, "GTTAA":34246, "GTTAT":41977, "GTTAC":39241, "GTTAG":27546, "GTTTA":39879, "GTTTT":111944, "GTTTC":100304, "GTTTG":94944, "GTTCA":83247, "GTTCT":93444, "GTTCC":95899, "GTTCG":71994, "GTTGA":95875, "GTTGT":78917, "GTTGC":79736, "GTTGG":102613, "GTCAA":82728, "GTCAT":62272, "GTCAC":54084, "GTCAG":57955, "GTCTA":39012, "GTCTT":90992, "GTCTC":81623, "GTCTG":67237, "GTCCA":70679, "GTCCT":70700, "GTCCC":63640, "GTCCG":50429, "GTCGA":73030, "GTCGT":61190, "GTCGC":73228, "GTCGG":68333, "GTGAA":77272, "GTGAT":62581, "GTGAC":48241, "GTGAG":50559, "GTGTA":25847, "GTGTT":58304, "GTGTC":41305, "GTGTG":43451, "GTGCA":45788, "GTGCT":60621, "GTGCC":60988, "GTGCG":48908, "GTGGA":80561, "GTGGT":78706, "GTGGC":80597, "GTGGG":82315, "GCAAA":101300, "GCAAT":67933, "GCAAC":90930, "GCAAG":87715, "GCATA":49676, "GCATT":64775, "GCATC":82566, "GCATG":59277, "GCACA":59153, "GCACT":45130, "GCACC":91342, "GCACG":57902, "GCAGA":98037, "GCAGT":55128, "GCAGC":104188, "GCAGG":125599, "GCTAA":34506, "GCTAT":54000, "GCTAC":50874, "GCTAG":30128, "GCTTA":42031, "GCTTT":108509, "GCTTC":139365, "GCTTG":99596, "GCTCA":78203, "GCTCT":76142, "GCTCC":100877, "GCTCG":77845, "GCTGA":97421, "GCTGT":69369, "GCTGC":102790, "GCTGG":134467, "GCCAA":123084, "GCCAT":92940, "GCCAC":101598, "GCCAG":111731, "GCCTA":55427, "GCCTT":108539, "GCCTC":120449, "GCCTG":110426, "GCCCA":113630, "GCCCT":90281, "GCCCC":99756, "GCCCG":89561, "GCCGA":114550, "GCCGT":86113, "GCCGC":134670, "GCCGG":110484, "GCGAA":85992, "GCGAT":78165, "GCGAC":78941, "GCGAG":72034, "GCGTA":33819, "GCGTT":61883, "GCGTC":63228, "GCGTG":53023, "GCGCA":66874, "GCGCT":71708, "GCGCC":103544, "GCGCG":83452, "GCGGA":88196, "GCGGT":76867, "GCGGC":120192, "GCGGG":90934, "GGAAA":127091, "GGAAT":82523, "GGAAC":92884, "GGAAG":121025, "GGATA":65793, "GGATT":86305, "GGATC":72684, "GGATG":95474, "GGACA":69778, "GGACT":51654, "GGACC":60643, "GGACG":67193, "GGAGA":141943, "GGAGT":55051, "GGAGC":88186, "GGAGG":146761, "GGTAA":38109, "GGTAT":42493, "GGTAC":34282, "GGTAG":52417, "GGTTA":43834, "GGTTT":111335, "GGTTC":95326, "GGTTG":109440, "GGTCA":71366, "GGTCT":83740, "GGTCC":56479, "GGTCG":71200, "GGTGA":87981, "GGTGT":61132, "GGTGC":71362, "GGTGG":115521, "GGCAA":107314, "GGCAT":81036, "GGCAC":64325, "GGCAG":99917, "GGCTA":54579, "GGCTT":115264, "GGCTC":83073, "GGCTG":121274, "GGCCA":95162, "GGCCT":85637, "GGCCC":74057, "GGCCG":101432, "GGCGA":121919, "GGCGT":73498, "GGCGC":96853, "GGCGG":140077, "GGGAA":89540, "GGGAT":75574, "GGGAC":56557, "GGGAG":94296, "GGGTA":37213, "GGGTT":96251, "GGGTC":65295, "GGGTG":78498, "GGGCA":84261, "GGGCT":83952, "GGGCC":67054, "GGGCG":89921, "GGGGA":85986, "GGGGT":74056, "GGGGC":78268, "GGGGG":64553 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-3B_S54_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-3B_S54_R2_001.fastq.gz -o AM-AL-3B.trim.R1.fastq.gz -O AM-AL-3B.trim.R2.fastq.gz -m --merged_out AM-AL-3B.trim.merged.fastq.gz " }