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"CTCGC":65987, "CTCGG":66905, "CTGAA":204998, "CTGAT":60840, "CTGAC":48062, "CTGAG":56792, "CTGTA":27674, "CTGTT":61820, "CTGTC":46567, "CTGTG":43679, "CTGCA":69748, "CTGCT":103014, "CTGCC":87332, "CTGCG":66400, "CTGGA":91094, "CTGGT":80842, "CTGGC":92974, "CTGGG":102304, "CCAAA":83547, "CCAAT":54933, "CCAAC":97583, "CCAAG":87318, "CCATA":44066, "CCATT":57270, "CCATC":93997, "CCATG":63529, "CCACA":91735, "CCACT":49886, "CCACC":188750, "CCACG":69098, "CCAGA":127321, "CCAGT":124422, "CCAGC":119953, "CCAGG":91215, "CCTAA":25978, "CCTAT":34631, "CCTAC":37911, "CCTAG":30207, "CCTTA":32737, "CCTTT":87105, "CCTTC":125098, "CCTTG":82212, "CCTCA":72795, "CCTCT":85706, "CCTCC":174002, "CCTCG":87532, "CCTGA":72335, "CCTGT":55868, "CCTGC":105342, "CCTGG":91448, "CCCAA":86912, "CCCAT":61979, "CCCAC":99484, "CCCAG":99206, "CCCTA":33277, "CCCTT":77586, "CCCTC":110991, "CCCTG":73559, "CCCCA":98294, "CCCCT":74637, "CCCCC":91252, "CCCCG":77015, "CCCGA":73900, "CCCGT":48946, "CCCGC":97349, "CCCGG":76134, 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"CGGAC":44967, "CGGAG":78264, "CGGTA":38687, "CGGTT":57827, "CGGTC":62862, "CGGTG":85892, "CGGCA":92630, "CGGCT":80529, "CGGCC":102455, "CGGCG":141938, "CGGGA":73772, "CGGGT":57139, "CGGGC":77135, "CGGGG":72406, "GAAAA":120501, "GAAAT":73822, "GAAAC":69144, "GAAAG":105492, "GAATA":47421, "GAATT":57139, "GAATC":58180, "GAATG":53636, "GAACA":68334, "GAACT":169457, "GAACC":65936, "GAACG":57301, "GAAGA":525229, "GAAGT":62270, "GAAGC":95567, "GAAGG":120061, "GATAA":50568, "GATAT":46131, "GATAC":35210, "GATAG":54503, "GATTA":36920, "GATTT":72607, "GATTC":60667, "GATTG":59959, "GATCA":74842, "GATCT":87807, "GATCC":64186, "GATCG":513615, "GATGA":101122, "GATGT":59047, "GATGC":70321, "GATGG":95090, "GACAA":64440, "GACAT":47953, "GACAC":39836, "GACAG":57659, "GACTA":26197, "GACTT":50879, "GACTC":35939, "GACTG":43803, "GACCA":73427, "GACCT":59664, "GACCC":57374, "GACCG":66487, "GACGA":90628, "GACGT":42337, "GACGC":60062, "GACGG":70859, "GAGAA":123127, "GAGAT":175112, "GAGAC":65552, "GAGAG":100342, "GAGTA":29404, "GAGTT":53806, "GAGTC":33890, "GAGTG":37543, "GAGCA":363098, "GAGCT":53646, "GAGCC":62710, "GAGCG":90086, "GAGGA":152032, "GAGGT":68926, "GAGGC":80469, "GAGGG":87965, "GTAAA":31597, "GTAAT":27144, "GTAAC":23157, "GTAAG":28896, "GTATA":19525, "GTATT":34094, "GTATC":31351, "GTATG":28709, "GTACA":25459, "GTACT":24377, "GTACC":27535, "GTACG":24661, "GTAGA":71654, "GTAGT":28008, "GTAGC":34186, "GTAGG":34598, "GTTAA":23481, "GTTAT":30604, "GTTAC":25127, "GTTAG":27739, "GTTTA":29890, "GTTTT":76680, "GTTTC":67554, "GTTTG":65544, "GTTCA":59220, "GTTCT":65400, "GTTCC":66842, "GTTCG":59316, "GTTGA":71651, "GTTGT":64572, "GTTGC":59935, "GTTGG":92817, "GTCAA":56258, "GTCAT":47855, "GTCAC":89260, "GTCAG":53531, "GTCTA":26954, "GTCTT":61889, "GTCTC":57908, "GTCTG":207451, "GTCCA":55195, "GTCCT":57513, "GTCCC":45581, "GTCCG":44662, "GTCGA":71077, "GTCGT":56038, "GTCGC":59543, "GTCGG":69500, "GTGAA":60779, "GTGAT":57153, "GTGAC":39872, "GTGAG":50992, "GTGTA":24220, "GTGTT":52533, "GTGTC":34683, "GTGTG":73025, "GTGCA":43748, "GTGCT":55084, "GTGCC":50614, "GTGCG":54136, "GTGGA":73576, "GTGGT":102747, "GTGGC":77263, "GTGGG":83356, "GCAAA":67623, "GCAAT":49343, "GCAAC":59238, "GCAAG":77263, "GCATA":34411, "GCATT":44940, "GCATC":66203, "GCATG":48993, "GCACA":308253, "GCACT":32528, "GCACC":78607, "GCACG":51399, "GCAGA":119160, "GCAGT":43996, "GCAGC":94852, "GCAGG":102842, "GCTAA":25089, "GCTAT":33255, "GCTAC":35717, "GCTAG":27953, "GCTTA":29032, "GCTTT":71093, "GCTTC":93998, "GCTTG":70297, "GCTCA":58658, "GCTCT":57849, "GCTCC":74327, "GCTCG":68698, "GCTGA":77206, "GCTGT":55259, "GCTGC":96272, "GCTGG":117500, "GCCAA":85225, "GCCAT":70122, "GCCAC":80648, "GCCAG":108644, "GCCTA":34369, "GCCTT":78354, "GCCTC":79142, "GCCTG":84107, "GCCCA":85846, "GCCCT":68700, "GCCCC":72067, "GCCCG":81403, "GCCGA":108633, "GCCGT":71384, "GCCGC":133845, "GCCGG":109095, "GCGAA":71173, "GCGAT":92903, "GCGAC":62320, "GCGAG":73542, "GCGTA":28158, "GCGTT":49626, "GCGTC":54950, "GCGTG":59643, "GCGCA":65922, "GCGCT":64760, "GCGCC":93376, "GCGCG":82511, "GCGGA":79140, "GCGGT":77868, "GCGGC":126380, "GCGGG":91410, "GGAAA":104732, "GGAAT":62860, "GGAAC":64979, "GGAAG":486449, "GGATA":51897, "GGATT":65261, "GGATC":61756, "GGATG":83644, "GGACA":55098, "GGACT":39474, "GGACC":47205, "GGACG":63514, "GGAGA":180318, "GGAGT":48606, "GGAGC":74553, "GGAGG":143983, "GGTAA":34798, "GGTAT":34582, "GGTAC":28064, "GGTAG":54518, "GGTTA":33192, "GGTTT":77810, "GGTTC":66139, "GGTTG":94333, "GGTCA":62322, "GGTCT":59839, "GGTCC":45821, "GGTCG":72676, "GGTGA":87707, "GGTGT":66406, "GGTGC":74515, "GGTGG":146700, "GGCAA":82692, "GGCAT":63358, "GGCAC":52576, "GGCAG":100822, "GGCTA":40955, "GGCTT":79033, "GGCTC":61168, "GGCTG":98581, "GGCCA":90517, "GGCCT":70518, "GGCCC":62139, "GGCCG":102183, "GGCGA":112633, "GGCGT":69836, "GGCGC":95634, "GGCGG":149497, "GGGAA":88045, "GGGAT":65845, "GGGAC":46141, "GGGAG":123648, "GGGTA":34198, "GGGTT":72826, "GGGTC":51537, "GGGTG":84818, "GGGCA":72766, "GGGCT":65310, "GGGCC":60217, "GGGCG":93733, "GGGGA":91608, "GGGGT":67994, "GGGGC":67284, "GGGGG":288976 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1235173, "total_bases": 75345553, "q20_bases": 73369256, "q30_bases": 69629252, "total_cycles": 61, "quality_curves": { "A":[39.4014,39.1015,38.9999,38.7618,38.8956,39.1533,39.0029,39.0527,39.0702,39.1448,39.1433,39.0865,39.1378,39.164,39.1125,39.0899,39.1975,39.0847,39.1712,39.0836,38.2234,39.086,39.1581,39.1645,38.2531,39.0431,39.1127,37.941,38.9284,37.4334,39.0314,39.0974,38.9821,39.0314,38.9046,38.9783,38.9819,38.9164,37.9086,38.9176,37.6345,38.4473,38.7028,38.5608,38.5666,38.6692,38.6624,37.6259,38.4998,37.889,37.7572,37.5256,38.162,37.9946,37.7129,36.6859,36.4401,36.0634,35.9421,36.2365,35.3669], 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"CCTGC":92932, "CCTGG":79548, "CCCAA":73638, "CCCAT":55084, "CCCAC":89402, "CCCAG":75063, "CCCTA":26534, "CCCTT":68019, "CCCTC":96421, "CCCTG":64296, "CCCCA":83186, "CCCCT":65657, "CCCCC":75471, "CCCCG":68156, "CCCGA":62985, "CCCGT":42605, "CCCGC":86037, "CCCGG":66607, "CCGAA":64881, "CCGAT":60656, "CCGAC":66391, "CCGAG":60787, "CCGTA":27671, "CCGTT":44569, "CCGTC":62250, "CCGTG":45864, "CCGCA":65940, "CCGCT":63685, "CCGCC":141875, "CCGCG":70464, "CCGGA":61544, "CCGGT":56736, "CCGGC":97028, "CCGGG":64444, "CGAAA":60599, "CGAAT":41281, "CGAAC":51345, "CGAAG":75796, "CGATA":37731, "CGATT":48635, "CGATC":69504, "CGATG":77185, "CGACA":51664, "CGACT":40688, "CGACC":70146, "CGACG":75026, "CGAGA":61429, "CGAGT":33643, "CGAGC":59875, "CGAGG":76257, "CGTAA":22587, "CGTAT":21694, "CGTAC":21313, "CGTAG":28436, "CGTTA":18240, "CGTTT":42330, "CGTTC":49898, "CGTTG":51230, "CGTCA":47646, "CGTCT":45415, "CGTCC":55423, "CGTCG":69949, "CGTGA":40891, "CGTGT":33310, "CGTGC":41696, "CGTGG":57404, "CGCAA":47627, "CGCAT":38187, "CGCAC":58519, "CGCAG":57410, "CGCTA":22254, "CGCTT":52217, "CGCTC":58116, "CGCTG":69917, "CGCCA":90845, "CGCCT":75389, "CGCCC":88455, "CGCCG":127842, "CGCGA":53750, "CGCGT":36516, "CGCGC":72305, "CGCGG":69221, "CGGAA":59588, "CGGAT":49233, "CGGAC":38939, "CGGAG":59758, "CGGTA":30297, "CGGTT":50913, "CGGTC":55132, "CGGTG":75149, "CGGCA":76510, "CGGCT":71084, "CGGCC":89283, "CGGCG":122495, "CGGGA":61624, "CGGGT":50327, "CGGGC":67105, "CGGGG":62312, "GAAAA":102529, "GAAAT":64418, "GAAAC":61193, "GAAAG":82321, "GAATA":39853, "GAATT":49955, "GAATC":51273, "GAATG":47195, "GAACA":57205, "GAACT":50178, "GAACC":57705, "GAACG":50129, "GAAGA":127608, "GAAGT":54306, "GAAGC":83491, "GAAGG":104703, "GATAA":42675, "GATAT":40292, "GATAC":30867, "GATAG":37871, "GATTA":31138, "GATTT":64428, "GATTC":53461, "GATTG":52941, "GATCA":62862, "GATCT":58814, "GATCC":55994, "GATCG":66867, "GATGA":86988, "GATGT":51923, "GATGC":61707, "GATGG":83993, "GACAA":55018, "GACAT":41768, "GACAC":35009, "GACAG":42704, "GACTA":21999, "GACTT":45226, "GACTC":31609, "GACTG":38454, "GACCA":62640, "GACCT":52683, "GACCC":51084, "GACCG":57881, "GACGA":78285, "GACGT":37040, "GACGC":52161, "GACGG":62603, "GAGAA":104945, "GAGAT":67587, "GAGAC":57087, "GAGAG":81213, "GAGTA":24430, "GAGTT":47257, "GAGTC":29819, "GAGTG":33092, "GAGCA":66054, "GAGCT":46968, "GAGCC":54753, "GAGCG":55991, "GAGGA":131809, "GAGGT":60131, "GAGGC":70822, "GAGGG":76531, "GTAAA":27098, "GTAAT":23688, "GTAAC":19879, "GTAAG":19865, "GTATA":16239, "GTATT":30089, "GTATC":27269, "GTATG":25348, "GTACA":21253, "GTACT":21307, "GTACC":23994, "GTACG":21363, "GTAGA":32555, "GTAGT":24827, "GTAGC":29849, "GTAGG":29842, "GTTAA":19854, "GTTAT":26874, "GTTAC":21915, "GTTAG":17436, "GTTTA":24677, "GTTTT":67279, "GTTTC":59456, "GTTTG":58534, "GTTCA":50549, "GTTCT":57320, "GTTCC":58365, "GTTCG":51544, "GTTGA":62065, "GTTGT":57677, "GTTGC":53352, "GTTGG":83892, "GTCAA":47670, "GTCAT":41804, "GTCAC":34992, "GTCAG":39155, "GTCTA":20831, "GTCTT":54208, "GTCTC":52666, "GTCTG":41428, "GTCCA":46734, "GTCCT":50464, "GTCCC":40608, "GTCCG":38940, "GTCGA":59588, "GTCGT":48352, "GTCGC":52198, "GTCGG":60776, "GTGAA":50235, "GTGAT":49815, "GTGAC":34753, "GTGAG":39046, "GTGTA":19397, "GTGTT":46453, "GTGTC":30382, "GTGTG":66478, "GTGCA":36548, "GTGCT":48376, "GTGCC":44457, "GTGCG":47603, "GTGGA":62923, "GTGGT":92393, "GTGGC":68351, "GTGGG":72661, "GCAAA":56194, "GCAAT":43528, "GCAAC":52346, "GCAAG":57460, "GCATA":27701, "GCATT":39333, "GCATC":57372, "GCATG":42540, "GCACA":48901, "GCACT":28325, "GCACC":69075, "GCACG":44419, "GCAGA":65756, "GCAGT":38663, "GCAGC":83822, "GCAGG":89298, "GCTAA":19613, "GCTAT":28667, "GCTAC":30921, "GCTAG":15769, "GCTTA":22574, "GCTTT":62587, "GCTTC":82226, "GCTTG":61740, "GCTCA":49365, "GCTCT":50602, "GCTCC":65552, "GCTCG":59764, "GCTGA":64854, "GCTGT":48233, "GCTGC":85102, "GCTGG":103627, "GCCAA":71054, "GCCAT":61378, "GCCAC":71182, "GCCAG":80279, "GCCTA":27152, "GCCTT":68902, "GCCTC":70586, "GCCTG":73090, "GCCCA":71823, "GCCCT":60280, "GCCCC":63887, "GCCCG":70472, "GCCGA":91394, "GCCGT":62401, "GCCGC":116473, "GCCGG":94860, "GCGAA":58182, "GCGAT":60930, "GCGAC":54416, "GCGAG":57463, "GCGTA":22134, "GCGTT":43301, "GCGTC":47589, "GCGTG":52280, "GCGCA":53630, "GCGCT":55529, "GCGCC":81136, "GCGCG":70385, "GCGGA":66478, "GCGGT":68859, "GCGGC":110491, "GCGGG":79394, "GGAAA":86383, "GGAAT":55072, "GGAAC":56881, "GGAAG":100904, "GGATA":42512, "GGATT":57480, "GGATC":54350, "GGATG":73146, "GGACA":45912, "GGACT":34602, "GGACC":41581, "GGACG":54822, "GGAGA":123143, "GGAGT":43184, "GGAGC":65414, "GGAGG":126054, "GGTAA":28053, "GGTAT":30218, "GGTAC":24065, "GGTAG":35111, "GGTTA":26804, "GGTTT":68689, "GGTTC":57599, "GGTTG":84410, "GGTCA":51492, "GGTCT":52091, "GGTCC":39859, "GGTCG":62632, "GGTGA":72863, "GGTGT":59434, "GGTGC":65459, "GGTGG":130304, "GGCAA":69211, "GGCAT":55345, "GGCAC":46159, "GGCAG":73411, "GGCTA":33175, "GGCTT":69102, "GGCTC":53733, "GGCTG":86675, "GGCCA":74666, "GGCCT":61176, "GGCCC":54309, "GGCCG":88050, "GGCGA":95309, "GGCGT":60998, "GGCGC":81237, "GGCGG":131092, "GGGAA":72522, "GGGAT":57594, "GGGAC":40248, "GGGAG":96035, "GGGTA":26722, "GGGTT":64421, "GGGTC":44875, "GGGTG":73756, "GGGCA":59931, "GGGCT":57200, "GGGCC":52339, "GGGCG":80884, "GGGGA":75284, "GGGGT":59034, "GGGGC":58717, "GGGGG":62439 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36C_S49_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36C_S49_R2_001.fastq.gz -o AM-AL-36C.trim.R1.fastq.gz -O AM-AL-36C.trim.R2.fastq.gz -m --merged_out AM-AL-36C.trim.merged.fastq.gz " }