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"CGGAC":31637, "CGGAG":58525, "CGGTA":29044, "CGGTT":38320, "CGGTC":44637, "CGGTG":59221, "CGGCA":69035, "CGGCT":64166, "CGGCC":78025, "CGGCG":102579, "CGGGA":48901, "CGGGT":41989, "CGGGC":58407, "CGGGG":55317, "GAAAA":57901, "GAAAT":39851, "GAAAC":41594, "GAAAG":54251, "GAATA":23642, "GAATT":29957, "GAATC":34285, "GAATG":29221, "GAACA":49705, "GAACT":109362, "GAACC":52092, "GAACG":38102, "GAAGA":329539, "GAAGT":38261, "GAAGC":69578, "GAAGG":72318, "GATAA":26468, "GATAT":24909, "GATAC":21997, "GATAG":31695, "GATTA":18748, "GATTT":38860, "GATTC":35689, "GATTG":34574, "GATCA":50398, "GATCT":43404, "GATCC":46888, "GATCG":342206, "GATGA":64494, "GATGT":36663, "GATGC":45571, "GATGG":59608, "GACAA":39025, "GACAT":31105, "GACAC":25700, "GACAG":37508, "GACTA":16242, "GACTT":34312, "GACTC":22319, "GACTG":30047, "GACCA":53362, "GACCT":41977, "GACCC":46030, "GACCG":48665, "GACGA":60543, "GACGT":26976, "GACGC":40621, "GACGG":47582, "GAGAA":61900, "GAGAT":114629, "GAGAC":39516, "GAGAG":42677, "GAGTA":17378, "GAGTT":31450, "GAGTC":20703, "GAGTG":21434, "GAGCA":262525, "GAGCT":36258, "GAGCC":46324, "GAGCG":42422, "GAGGA":96867, "GAGGT":46908, "GAGGC":62360, "GAGGG":54496, "GTAAA":16512, "GTAAT":16512, "GTAAC":17812, "GTAAG":16626, "GTATA":9843, "GTATT":18229, "GTATC":19605, "GTATG":16973, "GTACA":18229, "GTACT":16482, "GTACC":22189, "GTACG":18424, "GTAGA":47128, "GTAGT":17906, "GTAGC":26854, "GTAGG":23883, "GTTAA":11386, "GTTAT":16169, "GTTAC":20786, "GTTAG":16779, "GTTTA":16302, "GTTTT":40740, "GTTTC":39590, "GTTTG":42211, "GTTCA":37331, "GTTCT":39535, "GTTCC":52600, "GTTCG":42239, "GTTGA":44143, "GTTGT":40417, "GTTGC":41158, "GTTGG":61404, "GTCAA":32714, "GTCAT":29721, "GTCAC":52571, "GTCAG":34939, "GTCTA":16176, "GTCTT":35515, "GTCTC":36040, "GTCTG":136195, "GTCCA":38428, "GTCCT":40287, "GTCCC":34782, "GTCCG":29865, "GTCGA":48017, "GTCGT":39807, "GTCGC":42431, "GTCGG":45877, "GTGAA":41147, "GTGAT":38551, "GTGAC":26563, "GTGAG":32730, "GTGTA":13630, "GTGTT":32200, "GTGTC":21529, "GTGTG":28312, "GTGCA":27308, "GTGCT":38121, "GTGCC":38901, "GTGCG":33094, "GTGGA":48937, "GTGGT":60406, "GTGGC":54050, "GTGGG":58399, "GCAAA":38966, "GCAAT":38333, "GCAAC":42841, "GCAAG":49581, "GCATA":20512, "GCATT":28346, "GCATC":43590, "GCATG":34043, "GCACA":199313, "GCACT":20974, "GCACC":63588, "GCACG":36077, "GCAGA":79254, "GCAGT":28995, "GCAGC":76080, "GCAGG":96068, "GCTAA":14816, "GCTAT":21459, "GCTAC":29513, "GCTAG":20104, "GCTTA":17899, "GCTTT":40988, "GCTTC":66210, "GCTTG":46910, "GCTCA":40297, "GCTCT":34957, "GCTCC":55591, "GCTCG":49407, "GCTGA":52359, "GCTGT":40787, "GCTGC":75351, "GCTGG":93654, "GCCAA":60125, "GCCAT":46557, "GCCAC":60466, "GCCAG":79532, "GCCTA":23280, "GCCTT":50512, "GCCTC":59614, "GCCTG":70081, "GCCCA":67669, "GCCCT":51666, "GCCCC":59762, "GCCCG":61806, "GCCGA":80110, "GCCGT":54254, "GCCGC":98173, "GCCGG":84547, "GCGAA":47672, "GCGAT":44892, "GCGAC":46235, "GCGAG":50954, "GCGTA":17761, "GCGTT":30708, "GCGTC":36443, "GCGTG":34431, "GCGCA":48007, "GCGCT":43176, "GCGCC":70931, "GCGCG":55895, "GCGGA":56193, "GCGGT":52689, "GCGGC":92426, "GCGGG":67192, "GGAAA":52918, "GGAAT":34724, "GGAAC":52843, "GGAAG":315399, "GGATA":30568, "GGATT":38773, "GGATC":42820, "GGATG":56307, "GGACA":39737, "GGACT":28980, "GGACC":36469, "GGACG":45542, "GGAGA":101374, "GGAGT":30589, "GGAGC":56547, "GGAGG":106796, "GGTAA":20990, "GGTAT":20920, "GGTAC":23062, "GGTAG":41300, "GGTTA":19113, "GGTTT":48749, "GGTTC":47490, "GGTTG":67259, "GGTCA":42329, "GGTCT":41672, "GGTCC":33634, "GGTCG":51957, "GGTGA":63380, "GGTGT":42063, "GGTGC":55782, "GGTGG":93995, "GGCAA":54500, "GGCAT":44277, "GGCAC":40744, "GGCAG":77850, "GGCTA":31285, "GGCTT":54183, "GGCTC":44974, "GGCTG":78117, "GGCCA":68364, "GGCCT":55053, "GGCCC":50643, "GGCCG":78315, "GGCGA":84331, "GGCGT":45947, "GGCGC":72371, "GGCGG":107968, "GGGAA":48859, "GGGAT":42676, "GGGAC":35624, "GGGAG":66882, "GGGTA":24116, "GGGTT":52493, "GGGTC":39039, "GGGTG":63015, "GGGCA":56828, "GGGCT":49866, "GGGCC":48484, "GGGCG":70223, "GGGGA":56848, "GGGGT":52474, "GGGGC":55489, "GGGGG":121701 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 795681, "total_bases": 48536541, "q20_bases": 47382714, "q30_bases": 45137404, "total_cycles": 61, "quality_curves": { "A":[39.3967,39.1109,39.0222,38.9731,38.9562,39.0853,39.0413,39.0779,39.116,39.1377,39.1157,39.117,39.1345,39.1362,39.0547,39.0692,39.1621,39.1068,39.1739,39.0645,38.3941,39.0896,39.1328,39.1436,38.5307,39.0565,39.1137,38.3358,38.9746,37.93,39.0165,39.1136,39.023,39.0558,38.816,38.9782,39.0113,39.0427,39.0008,38.9532,38.887,38.0681,38.7862,38.6352,38.647,38.7679,38.7772,38.0233,38.5682,37.9806,37.8713,37.5631,38.2218,38.0921,37.7923,36.7766,36.5295,36.1365,36.0119,36.2916,35.5536], 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"CTCAA":33307, "CTCAT":27212, "CTCAC":27234, "CTCAG":28455, "CTCTA":17092, "CTCTT":37128, "CTCTC":32587, "CTCTG":30763, "CTCCA":54354, "CTCCT":86166, "CTCCC":55434, "CTCCG":44479, "CTCGA":41553, "CTCGT":31892, "CTCGC":37910, "CTCGG":42810, "CTGAA":34705, "CTGAT":32253, "CTGAC":27340, "CTGAG":29172, "CTGTA":14448, "CTGTT":39935, "CTGTC":25270, "CTGTG":27455, "CTGCA":39064, "CTGCT":79395, "CTGCC":60907, "CTGCG":41774, "CTGGA":54956, "CTGGT":52780, "CTGGC":58890, "CTGGG":57388, "CCAAA":49779, "CCAAT":29397, "CCAAC":62974, "CCAAG":44888, "CCATA":21007, "CCATT":27564, "CCATC":52712, "CCATG":37892, "CCACA":51274, "CCACT":26931, "CCACC":101730, "CCACG":43829, "CCAGA":46758, "CCAGT":37729, "CCAGC":84842, "CCAGG":63171, "CCTAA":12841, "CCTAT":17051, "CCTAC":23600, "CCTAG":11333, "CCTTA":13536, "CCTTT":38983, "CCTTC":66407, "CCTTG":50890, "CCTCA":41851, "CCTCT":39774, "CCTCC":100196, "CCTCG":52909, "CCTGA":39842, "CCTGT":40053, "CCTGC":86048, "CCTGG":62360, "CCCAA":56649, "CCCAT":35166, "CCCAC":64728, "CCCAG":61436, "CCCTA":18952, "CCCTT":36371, "CCCTC":55728, "CCCTG":49514, "CCCCA":66483, "CCCCT":45383, "CCCCC":51629, "CCCCG":50663, "CCCGA":44215, "CCCGT":29426, "CCCGC":61328, "CCCGG":50543, "CCGAA":44737, "CCGAT":39103, "CCGAC":44814, "CCGAG":45982, "CCGTA":19858, "CCGTT":29116, "CCGTC":41508, "CCGTG":32605, "CCGCA":47013, "CCGCT":43851, "CCGCC":98073, "CCGCG":51024, "CCGGA":45724, "CCGGT":42643, "CCGGC":74450, "CCGGG":49796, "CGAAA":36369, "CGAAT":25223, "CGAAC":36851, "CGAAG":51630, "CGATA":22356, "CGATT":27025, "CGATC":44647, "CGATG":49892, "CGACA":33236, "CGACT":28727, "CGACC":52134, "CGACG":50902, "CGAGA":39232, "CGAGT":20555, "CGAGC":44158, "CGAGG":53910, "CGTAA":16558, "CGTAT":12762, "CGTAC":14574, "CGTAG":18814, "CGTTA":9884, "CGTTT":24416, "CGTTC":31497, "CGTTG":32113, "CGTCA":29604, "CGTCT":27782, "CGTCC":38254, "CGTCG":46498, "CGTGA":27145, "CGTGT":16336, "CGTGC":27333, "CGTGG":39700, "CGCAA":29607, "CGCAT":22761, "CGCAC":32911, "CGCAG":41250, "CGCTA":13312, "CGCTT":31169, "CGCTC":36172, "CGCTG":48049, "CGCCA":60537, "CGCCT":56066, "CGCCC":63916, "CGCCG":87918, "CGCGA":35368, "CGCGT":23472, "CGCGC":46662, "CGCGG":50405, "CGGAA":38913, "CGGAT":31144, "CGGAC":26752, "CGGAG":43963, "CGGTA":22093, "CGGTT":33226, "CGGTC":38149, "CGGTG":50424, "CGGCA":55744, "CGGCT":55911, "CGGCC":66137, "CGGCG":86352, "CGGGA":39920, "CGGGT":36418, "CGGGC":50568, "CGGGG":46741, "GAAAA":48645, "GAAAT":34131, "GAAAC":35813, "GAAAG":40283, "GAATA":19435, "GAATT":25989, "GAATC":30167, "GAATG":25207, "GAACA":40927, "GAACT":33581, "GAACC":44306, "GAACG":32589, "GAAGA":64779, "GAAGT":31994, "GAAGC":59182, "GAAGG":62020, "GATAA":21388, "GATAT":21175, "GATAC":18599, "GATAG":20966, "GATTA":15530, "GATTT":34171, "GATTC":30614, "GATTG":29633, "GATCA":41501, "GATCT":37168, "GATCC":39845, "GATCG":42185, "GATGA":53392, "GATGT":31489, "GATGC":38888, "GATGG":51768, "GACAA":32620, "GACAT":25927, "GACAC":22083, "GACAG":26367, "GACTA":13063, "GACTT":30072, "GACTC":18671, "GACTG":24959, "GACCA":44096, "GACCT":35778, "GACCC":40059, "GACCG":41471, "GACGA":50600, "GACGT":22828, "GACGC":34351, "GACGG":41365, "GAGAA":51510, "GAGAT":38264, "GAGAC":34644, "GAGAG":32264, "GAGTA":14352, "GAGTT":27062, "GAGTC":17693, "GAGTG":18452, "GAGCA":48618, "GAGCT":30440, "GAGCC":39916, "GAGCG":35855, "GAGGA":82459, "GAGGT":39298, "GAGGC":53756, "GAGGG":46756, "GTAAA":13795, "GTAAT":14270, "GTAAC":14635, "GTAAG":10828, "GTATA":7886, "GTATT":15611, "GTATC":16624, "GTATG":14604, "GTACA":14885, "GTACT":13956, "GTACC":19171, "GTACG":15481, "GTAGA":19966, "GTAGT":15584, "GTAGC":22641, "GTAGG":19874, "GTTAA":9286, "GTTAT":13994, "GTTAC":17884, "GTTAG":10033, "GTTTA":12858, "GTTTT":35569, "GTTTC":34174, "GTTTG":37155, "GTTCA":30990, "GTTCT":33883, "GTTCC":45780, "GTTCG":36087, "GTTGA":37639, "GTTGT":35501, "GTTGC":35822, "GTTGG":54368, "GTCAA":26852, "GTCAT":25234, "GTCAC":24149, "GTCAG":24330, "GTCTA":12423, "GTCTT":30298, "GTCTC":31981, "GTCTG":27113, "GTCCA":31668, "GTCCT":35068, "GTCCC":30766, "GTCCG":25547, "GTCGA":38838, "GTCGT":33315, "GTCGC":35988, "GTCGG":39210, "GTGAA":32884, "GTGAT":32001, "GTGAC":22151, "GTGAG":24363, "GTGTA":10745, "GTGTT":28202, "GTGTC":18579, "GTGTG":24949, "GTGCA":22269, "GTGCT":32537, "GTGCC":33243, "GTGCG":27975, "GTGGA":40443, "GTGGT":53786, "GTGGC":46932, "GTGGG":49917, "GCAAA":31017, "GCAAT":24324, "GCAAC":36665, "GCAAG":35998, "GCATA":16288, "GCATT":24275, "GCATC":36597, "GCATG":28676, "GCACA":24688, "GCACT":17972, "GCACC":54643, "GCACG":30037, "GCAGA":40470, "GCAGT":24940, "GCAGC":65900, "GCAGG":82365, "GCTAA":11052, "GCTAT":17508, "GCTAC":24776, "GCTAG":11909, "GCTTA":13116, "GCTTT":35648, "GCTTC":57528, "GCTTG":40869, "GCTCA":32962, "GCTCT":29916, "GCTCC":48617, "GCTCG":42129, "GCTGA":43061, "GCTGT":34498, "GCTGC":65733, "GCTGG":80879, "GCCAA":48723, "GCCAT":39598, "GCCAC":51848, "GCCAG":58230, "GCCTA":18022, "GCCTT":43737, "GCCTC":52305, "GCCTG":60118, "GCCCA":55545, "GCCCT":44397, "GCCCC":51625, "GCCCG":51761, "GCCGA":65465, "GCCGT":46045, "GCCGC":82614, "GCCGG":71768, "GCGAA":37539, "GCGAT":37789, "GCGAC":39201, "GCGAG":38184, "GCGTA":13575, "GCGTT":25999, "GCGTC":30679, "GCGTG":29119, "GCGCA":37475, "GCGCT":35613, "GCGCC":60360, "GCGCG":45982, "GCGGA":45607, "GCGGT":45923, "GCGGC":79408, "GCGGG":57369, "GGAAA":42951, "GGAAT":30293, "GGAAC":46008, "GGAAG":56746, "GGATA":23864, "GGATT":33643, "GGATC":36987, "GGATG":48043, "GGACA":32390, "GGACT":24446, "GGACC":31232, "GGACG":38356, "GGAGA":62922, "GGAGT":26625, "GGAGC":48798, "GGAGG":91784, "GGTAA":16643, "GGTAT":17929, "GGTAC":19300, "GGTAG":26384, "GGTTA":14957, "GGTTT":42801, "GGTTC":41222, "GGTTG":59426, "GGTCA":34277, "GGTCT":35815, "GGTCC":28810, "GGTCG":44215, "GGTGA":50605, "GGTGT":37291, "GGTGC":47660, "GGTGG":82320, "GGCAA":44390, "GGCAT":37844, "GGCAC":35272, "GGCAG":56702, "GGCTA":24553, "GGCTT":46701, "GGCTC":39112, "GGCTG":68013, "GGCCA":55168, "GGCCT":47277, "GGCCC":43234, "GGCCG":65610, "GGCGA":68893, "GGCGT":38916, "GGCGC":59600, "GGCGG":93482, "GGGAA":39757, "GGGAT":36607, "GGGAC":30010, "GGGAG":49623, "GGGTA":18414, "GGGTT":46493, "GGGTC":33718, "GGGTG":53526, "GGGCA":46415, "GGGCT":43593, "GGGCC":41700, "GGGCG":59335, "GGGGA":46267, "GGGGT":44814, "GGGGC":48118, "GGGGG":41331 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36B_S48_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36B_S48_R2_001.fastq.gz -o AM-AL-36B.trim.R1.fastq.gz -O AM-AL-36B.trim.R2.fastq.gz -m --merged_out AM-AL-36B.trim.merged.fastq.gz " }