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"CGGCG":54691, "CGGGA":27156, "CGGGT":23083, "CGGGC":31635, "CGGGG":30072, "GAAAA":31634, "GAAAT":22337, "GAAAC":22736, "GAAAG":29763, "GAATA":13324, "GAATT":16650, "GAATC":19010, "GAATG":16538, "GAACA":26488, "GAACT":69253, "GAACC":27200, "GAACG":20987, "GAAGA":205387, "GAAGT":21004, "GAAGC":36949, "GAAGG":38958, "GATAA":14862, "GATAT":13953, "GATAC":11695, "GATAG":18320, "GATTA":10549, "GATTT":21825, "GATTC":19966, "GATTG":19637, "GATCA":27955, "GATCT":24314, "GATCC":25953, "GATCG":215087, "GATGA":34455, "GATGT":20284, "GATGC":24425, "GATGG":32958, "GACAA":20920, "GACAT":16856, "GACAC":13502, "GACAG":20585, "GACTA":9036, "GACTT":18592, "GACTC":12675, "GACTG":16052, "GACCA":28405, "GACCT":22623, "GACCC":24851, "GACCG":26376, "GACGA":32497, "GACGT":14659, "GACGC":22357, "GACGG":25569, "GAGAA":34762, "GAGAT":69353, "GAGAC":21911, "GAGAG":23845, "GAGTA":9616, "GAGTT":17286, "GAGTC":11775, "GAGTG":12020, "GAGCA":156604, "GAGCT":19711, "GAGCC":25402, "GAGCG":22742, "GAGGA":53314, "GAGGT":25758, "GAGGC":33958, "GAGGG":29699, "GTAAA":9087, "GTAAT":8793, "GTAAC":9696, "GTAAG":9546, "GTATA":5550, "GTATT":10272, "GTATC":10568, "GTATG":9133, "GTACA":10413, "GTACT":8553, "GTACC":12127, "GTACG":10194, "GTAGA":28876, "GTAGT":9937, "GTAGC":14511, "GTAGG":12993, "GTTAA":6505, "GTTAT":9009, "GTTAC":11106, "GTTAG":9757, "GTTTA":9192, "GTTTT":22606, "GTTTC":22428, "GTTTG":24257, "GTTCA":20782, "GTTCT":22677, "GTTCC":29229, "GTTCG":22951, "GTTGA":24546, "GTTGT":23084, "GTTGC":23136, "GTTGG":34371, "GTCAA":18504, "GTCAT":16390, "GTCAC":33024, "GTCAG":19803, "GTCTA":9274, "GTCTT":20318, "GTCTC":20944, "GTCTG":88104, "GTCCA":21799, "GTCCT":23356, "GTCCC":19928, "GTCCG":16854, "GTCGA":26541, "GTCGT":22086, "GTCGC":23381, "GTCGG":25438, "GTGAA":22421, "GTGAT":20937, "GTGAC":14160, "GTGAG":18512, "GTGTA":7498, "GTGTT":17818, "GTGTC":12036, "GTGTG":15717, "GTGCA":15013, "GTGCT":20788, "GTGCC":21235, "GTGCG":18077, "GTGGA":26624, "GTGGT":33230, "GTGGC":29773, "GTGGG":32484, 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"GGAAC":28518, "GGAAG":197008, "GGATA":17359, "GGATT":21871, "GGATC":24196, "GGATG":30158, "GGACA":21157, "GGACT":15592, "GGACC":19834, "GGACG":24480, "GGAGA":58324, "GGAGT":16584, "GGAGC":30612, "GGAGG":58623, "GGTAA":11926, "GGTAT":11570, "GGTAC":12814, "GGTAG":23726, "GGTTA":11096, "GGTTT":28159, "GGTTC":26495, "GGTTG":38035, "GGTCA":23829, "GGTCT":24042, "GGTCC":19314, "GGTCG":28894, "GGTGA":34244, "GGTGT":23054, "GGTGC":29874, "GGTGG":51660, "GGCAA":29607, "GGCAT":23965, "GGCAC":21604, "GGCAG":43660, "GGCTA":17072, "GGCTT":30715, "GGCTC":25167, "GGCTG":43004, "GGCCA":36936, "GGCCT":31112, "GGCCC":27608, "GGCCG":42320, "GGCGA":44727, "GGCGT":25243, "GGCGC":38551, "GGCGG":57569, "GGGAA":26948, "GGGAT":23971, "GGGAC":19096, "GGGAG":37064, "GGGTA":13586, "GGGTT":29914, "GGGTC":22229, "GGGTG":34214, "GGGCA":31408, "GGGCT":27975, "GGGCC":26654, "GGGCG":37423, "GGGGA":31484, "GGGGT":29314, "GGGGC":30137, "GGGGG":84972 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 446424, "total_bases": 27231864, "q20_bases": 26487135, "q30_bases": 25150999, "total_cycles": 61, "quality_curves": { "A":[39.3886,39.1708,39.1767,38.8717,39.0648,39.0709,39.1835,39.1382,39.194,39.1565,39.1685,39.2029,39.1878,39.1795,39.0949,39.0857,39.2012,39.1355,39.2275,39.1326,38.3308,39.1121,39.1455,39.1791,38.4231,39.0424,39.0996,38.1675,38.9226,37.6985,39.0613,39.1609,39.0452,39.0907,38.8181,38.9684,39.0339,39.0653,38.5918,39.023,38.713,38.6844,38.7396,38.5965,38.4324,38.675,38.6874,37.5366,38.3662,37.6733,37.5292,37.2342,37.9917,37.7732,37.3567,36.1887,35.9605,35.5301,35.2421,35.7046,34.8081], 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"G":[39.284,39.2589,39.2551,39.1945,39.2058,39.2473,39.3147,39.2495,39.2708,39.282,39.2784,39.303,39.2335,39.3077,39.2504,39.2547,39.2983,39.231,39.2973,38.6909,39.3553,38.941,39.2402,39.2688,38.6749,39.1412,39.1924,38.5743,39.0093,38.4024,39.1166,38.7449,39.0137,39.0281,38.7895,38.1672,38.9624,39.023,38.9296,38.9038,38.6838,37.6347,38.7551,37.9544,38.5533,38.5757,38.1431,38.3074,38.0903,37.929,37.7432,37.5464,37.461,37.3864,37.0317,35.9512,35.6132,36.506,36.2698,36.6465,35.4566], "mean":[39.3875,39.2844,39.2253,39.1052,39.0963,39.2562,39.261,39.2318,39.2652,39.2744,39.2546,39.2776,39.125,39.2787,39.2248,39.2403,39.2868,39.2162,39.2775,38.8679,39.1084,39.1023,39.2312,39.2525,38.9636,39.1966,39.1989,38.8701,39.1337,38.7017,38.8917,39.0087,39.0026,39.0365,38.7093,38.8098,38.9954,38.8877,38.7409,38.4657,38.525,38.3185,38.7497,38.2229,38.5904,38.2495,37.651,38.0649,37.7147,38.0372,37.5965,37.7134,36.9823,36.325,36.3015,36.0779,36.2185,36.2637,35.8094,35.1644,35.0822] }, "content_curves": { 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"GC":[0.640603,0.582655,0.611473,0.606531,0.596994,0.550307,0.563995,0.546697,0.538615,0.557949,0.557735,0.557011,0.569243,0.563719,0.560785,0.572448,0.571307,0.564138,0.570505,0.564637,0.56302,0.575264,0.56975,0.563049,0.572273,0.566971,0.561266,0.571603,0.564516,0.559774,0.568313,0.565919,0.560337,0.570688,0.566291,0.56271,0.569146,0.563045,0.559358,0.570491,0.563541,0.559112,0.565336,0.564883,0.559289,0.568616,0.564855,0.562177,0.5658,0.564434,0.557226,0.568112,0.565757,0.558708,0.566454,0.563726,0.557921,0.565266,0.561867,0.557651,0.568211,0.566858,0.560271,0.566321,0.562539,0.554622,0.569819,0.563,0.55816,0.567541,0.565491,0.559614,0.572118,0.564172,0.562653,0.567234,0.566486,0.560435,0.573956,0.567066,0.568383,0.581511,0.574718,0.569307,0.582117,0.589168,0.580769,0.604245,0.593888,0.538707,0.543269] }, "kmer_count": { "AAAAA":26102, "AAAAT":17015, "AAAAC":21145, "AAAAG":22279, "AAATA":11794, "AAATT":12923, "AAATC":18612, "AAATG":14909, "AAACA":17621, "AAACT":12868, "AAACC":26488, 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"CTCCT":49992, "CTCCC":32413, "CTCCG":26255, "CTCGA":24150, "CTCGT":18782, "CTCGC":22406, "CTCGG":25480, "CTGAA":20387, "CTGAT":18973, "CTGAC":15870, "CTGAG":17181, "CTGTA":8381, "CTGTT":23101, "CTGTC":14995, "CTGTG":16045, "CTGCA":23151, "CTGCT":45766, "CTGCC":35443, "CTGCG":23710, "CTGGA":31440, "CTGGT":30686, "CTGGC":34019, "CTGGG":32779, "CCAAA":27051, "CCAAT":16555, "CCAAC":33297, "CCAAG":25423, "CCATA":11792, "CCATT":16559, "CCATC":30019, "CCATG":22117, "CCACA":26834, "CCACT":15245, "CCACC":52484, "CCACG":24563, "CCAGA":26191, "CCAGT":21844, "CCAGC":47118, "CCAGG":36139, "CCTAA":7239, "CCTAT":9340, "CCTAC":13159, "CCTAG":6669, "CCTTA":7859, "CCTTT":22932, "CCTTC":38062, "CCTTG":30140, "CCTCA":23893, "CCTCT":23006, "CCTCC":57307, "CCTCG":31157, "CCTGA":23647, "CCTGT":23116, "CCTGC":49434, "CCTGG":36181, "CCCAA":30163, "CCCAT":20359, "CCCAC":33519, "CCCAG":34372, "CCCTA":10247, "CCCTT":21125, "CCCTC":30653, "CCCTG":28703, "CCCCA":35165, "CCCCT":25608, "CCCCC":27679, "CCCCG":28793, "CCCGA":24811, "CCCGT":17445, "CCCGC":34325, "CCCGG":30135, "CCGAA":24969, "CCGAT":22834, "CCGAC":25103, "CCGAG":26251, "CCGTA":11604, "CCGTT":17101, "CCGTC":24141, "CCGTG":19117, "CCGCA":26338, "CCGCT":25293, "CCGCC":55902, "CCGCG":29418, "CCGGA":26922, "CCGGT":25563, "CCGGC":42512, "CCGGG":28991, "CGAAA":20591, "CGAAT":14419, "CGAAC":20404, "CGAAG":29521, "CGATA":12677, "CGATT":15786, "CGATC":26394, "CGATG":29193, "CGACA":18925, "CGACT":16495, "CGACC":28757, "CGACG":29041, "CGAGA":22600, "CGAGT":12057, "CGAGC":24834, "CGAGG":30674, "CGTAA":9239, "CGTAT":7349, "CGTAC":8540, "CGTAG":11424, "CGTTA":5853, "CGTTT":14299, "CGTTC":18749, "CGTTG":18846, "CGTCA":17236, "CGTCT":16200, "CGTCC":22310, "CGTCG":27424, "CGTGA":15558, "CGTGT":9553, "CGTGC":16170, "CGTGG":23161, "CGCAA":16670, "CGCAT":13405, "CGCAC":18104, "CGCAG":23249, "CGCTA":7657, "CGCTT":18427, "CGCTC":21848, "CGCTG":27545, "CGCCA":33736, "CGCCT":32901, "CGCCC":35994, "CGCCG":50640, "CGCGA":20114, "CGCGT":13800, "CGCGC":26812, "CGCGG":29261, "CGGAA":22497, "CGGAT":17965, "CGGAC":15234, "CGGAG":25470, "CGGTA":12844, "CGGTT":20065, "CGGTC":22613, "CGGTG":29440, "CGGCA":30828, "CGGCT":32144, "CGGCC":38645, "CGGCG":48740, "CGGGA":23165, "CGGGT":21111, "CGGGC":28816, "CGGGG":26555, "GAAAA":27744, "GAAAT":20261, "GAAAC":20909, "GAAAG":23029, "GAATA":11505, "GAATT":15163, "GAATC":17581, "GAATG":15123, "GAACA":22523, "GAACT":19079, "GAACC":24271, "GAACG":18954, "GAAGA":36600, "GAAGT":18915, "GAAGC":33458, "GAAGG":34941, "GATAA":12691, "GATAT":12641, "GATAC":10493, "GATAG":12213, "GATTA":9099, "GATTT":20109, "GATTC":18041, "GATTG":17759, "GATCA":24066, "GATCT":22143, "GATCC":23167, "GATCG":24833, "GATGA":30437, "GATGT":18421, "GATGC":21974, "GATGG":30216, "GACAA":18494, "GACAT":14998, "GACAC":12230, "GACAG":14844, "GACTA":7530, "GACTT":17094, "GACTC":11468, "GACTG":14300, "GACCA":24609, "GACCT":20568, "GACCC":22552, "GACCG":23523, "GACGA":28659, "GACGT":13249, "GACGC":19875, "GACGG":23404, "GAGAA":30302, "GAGAT":22473, "GAGAC":20018, "GAGAG":18320, "GAGTA":8138, "GAGTT":15611, "GAGTC":10564, "GAGTG":10951, "GAGCA":27233, "GAGCT":17758, "GAGCC":22857, "GAGCG":20343, "GAGGA":46932, "GAGGT":22886, "GAGGC":30800, "GAGGG":26632, "GTAAA":8015, "GTAAT":8033, "GTAAC":8553, "GTAAG":6323, "GTATA":4636, "GTATT":9393, "GTATC":9594, "GTATG":8286, "GTACA":8914, "GTACT":7727, "GTACC":10962, "GTACG":8885, "GTAGA":12112, "GTAGT":9017, "GTAGC":13172, "GTAGG":11646, "GTTAA":5606, "GTTAT":8231, "GTTAC":10129, "GTTAG":5664, "GTTTA":7561, "GTTTT":20522, "GTTTC":20607, "GTTTG":22301, "GTTCA":18007, "GTTCT":20440, "GTTCC":26433, "GTTCG":20689, "GTTGA":21876, "GTTGT":21212, "GTTGC":20985, "GTTGG":31962, "GTCAA":15938, "GTCAT":14808, "GTCAC":13648, "GTCAG":14509, "GTCTA":7411, "GTCTT":18208, "GTCTC":19177, "GTCTG":15777, "GTCCA":18822, "GTCCT":21146, "GTCCC":18305, "GTCCG":15200, "GTCGA":22699, "GTCGT":19589, "GTCGC":20949, "GTCGG":22831, "GTGAA":19340, "GTGAT":18638, "GTGAC":12540, "GTGAG":14285, "GTGTA":6187, "GTGTT":16247, "GTGTC":10787, "GTGTG":14333, "GTGCA":12838, "GTGCT":18762, "GTGCC":19158, "GTGCG":16328, "GTGGA":23318, "GTGGT":30489, "GTGGC":27272, "GTGGG":29121, "GCAAA":17839, "GCAAT":14105, "GCAAC":20166, "GCAAG":20329, "GCATA":9418, "GCATT":14229, "GCATC":21626, "GCATG":16246, "GCACA":14206, "GCACT":10215, "GCACC":29888, "GCACG":16963, "GCAGA":23013, "GCAGT":14881, "GCAGC":36759, "GCAGG":46337, "GCTAA":6508, "GCTAT":9678, "GCTAC":13835, "GCTAG":6835, "GCTTA":7503, "GCTTT":21492, "GCTTC":33830, "GCTTG":24417, "GCTCA":19697, "GCTCT":17764, "GCTCC":28768, "GCTCG":24957, "GCTGA":24909, "GCTGT":20200, "GCTGC":38262, "GCTGG":45946, "GCCAA":27769, "GCCAT":22752, "GCCAC":28300, "GCCAG":33563, "GCCTA":10275, "GCCTT":25769, "GCCTC":31362, "GCCTG":35102, "GCCCA":30758, "GCCCT":25340, "GCCCC":29479, "GCCCG":30169, "GCCGA":37266, "GCCGT":26522, "GCCGC":47174, "GCCGG":41143, "GCGAA":21785, "GCGAT":22047, "GCGAC":21514, "GCGAG":21767, "GCGTA":8172, "GCGTT":15369, "GCGTC":17965, "GCGTG":16848, "GCGCA":21157, "GCGCT":20972, "GCGCC":33975, "GCGCG":26369, "GCGGA":25908, "GCGGT":26458, "GCGGC":44936, "GCGGG":32476, "GGAAA":25003, "GGAAT":18100, "GGAAC":25933, "GGAAG":31937, "GGATA":14232, "GGATT":20033, "GGATC":22170, "GGATG":27219, "GGACA":17948, "GGACT":14065, "GGACC":17957, "GGACG":21776, "GGAGA":36323, "GGAGT":15262, "GGAGC":27731, "GGAGG":52624, "GGTAA":9768, "GGTAT":10456, "GGTAC":11313, "GGTAG":15430, "GGTTA":8751, "GGTTT":25906, "GGTTC":24121, "GGTTG":35113, "GGTCA":20111, "GGTCT":21358, "GGTCC":17286, "GGTCG":25852, "GGTGA":29158, "GGTGT":21117, "GGTGC":27025, "GGTGG":47156, "GGCAA":25391, "GGCAT":21746, "GGCAC":19380, "GGCAG":32611, "GGCTA":13979, "GGCTT":27912, "GGCTC":23125, "GGCTG":39194, "GGCCA":31533, "GGCCT":28265, "GGCCC":24824, "GGCCG":37582, "GGCGA":38939, "GGCGT":22796, "GGCGC":34002, "GGCGG":52247, "GGGAA":22807, "GGGAT":21662, "GGGAC":16993, "GGGAG":28339, "GGGTA":10691, "GGGTT":27459, "GGGTC":20186, "GGGTG":30672, "GGGCA":26576, "GGGCT":25692, "GGGCC":24033, "GGGCG":33550, "GGGGA":26481, "GGGGT":26298, "GGGGC":27225, "GGGGG":23905 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36A_S47_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-36A_S47_R2_001.fastq.gz -o AM-AL-36A.trim.R1.fastq.gz -O AM-AL-36A.trim.R2.fastq.gz -m --merged_out AM-AL-36A.trim.merged.fastq.gz " }