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"CGGAC":38058, "CGGAG":67676, "CGGTA":36493, "CGGTT":49831, "CGGTC":56667, "CGGTG":75228, "CGGCA":81835, "CGGCT":77787, "CGGCC":94107, "CGGCG":125561, "CGGGA":57460, "CGGGT":53223, "CGGGC":70530, "CGGGG":68199, "GAAAA":71754, "GAAAT":51889, "GAAAC":51076, "GAAAG":64029, "GAATA":28861, "GAATT":37182, "GAATC":41887, "GAATG":36539, "GAACA":58647, "GAACT":98278, "GAACC":60434, "GAACG":44430, "GAAGA":306284, "GAAGT":47619, "GAAGC":80302, "GAAGG":84282, "GATAA":34379, "GATAT":32310, "GATAC":26967, "GATAG":35818, "GATTA":24457, "GATTT":48534, "GATTC":44458, "GATTG":44703, "GATCA":59620, "GATCT":49043, "GATCC":55628, "GATCG":316609, "GATGA":74410, "GATGT":45278, "GATGC":55739, "GATGG":73009, "GACAA":46521, "GACAT":37506, "GACAC":30719, "GACAG":43143, "GACTA":19284, "GACTT":41718, "GACTC":27619, "GACTG":37084, "GACCA":63428, "GACCT":50475, "GACCC":54497, "GACCG":58055, "GACGA":68083, "GACGT":33021, "GACGC":46861, "GACGG":56352, "GAGAA":74166, "GAGAT":115489, "GAGAC":46072, "GAGAG":48094, "GAGTA":20681, "GAGTT":38463, "GAGTC":26042, "GAGTG":26079, "GAGCA":224454, "GAGCT":43676, "GAGCC":55492, "GAGCG":50041, "GAGGA":103652, "GAGGT":57492, "GAGGC":71308, "GAGGG":60035, "GTAAA":21679, "GTAAT":20301, "GTAAC":22153, "GTAAG":20715, "GTATA":12260, "GTATT":22933, "GTATC":24139, "GTATG":20768, "GTACA":21563, "GTACT":19316, "GTACC":26624, "GTACG":23113, "GTAGA":46863, "GTAGT":22571, "GTAGC":31432, "GTAGG":29264, "GTTAA":14968, "GTTAT":21698, "GTTAC":26308, "GTTAG":19254, "GTTTA":19950, "GTTTT":51772, "GTTTC":50538, "GTTTG":53534, "GTTCA":47834, "GTTCT":50242, "GTTCC":66996, "GTTCG":51721, "GTTGA":54516, "GTTGT":49577, "GTTGC":52089, "GTTGG":77436, "GTCAA":42126, "GTCAT":37299, "GTCAC":50237, "GTCAG":42058, "GTCTA":19001, "GTCTT":44614, "GTCTC":43869, "GTCTG":119600, "GTCCA":47665, "GTCCT":49769, "GTCCC":43092, "GTCCG":38671, "GTCGA":58087, "GTCGT":48114, "GTCGC":53070, "GTCGG":58850, "GTGAA":48965, "GTGAT":47806, "GTGAC":32887, "GTGAG":37556, "GTGTA":16378, "GTGTT":40050, "GTGTC":27977, "GTGTG":33526, "GTGCA":34853, "GTGCT":46924, "GTGCC":48678, "GTGCG":41452, "GTGGA":58051, "GTGGT":73277, "GTGGC":66147, "GTGGG":70739, "GCAAA":48105, "GCAAT":37321, "GCAAC":50721, "GCAAG":60114, "GCATA":24125, "GCATT":35822, "GCATC":53152, "GCATG":40180, "GCACA":172627, "GCACT":25517, "GCACC":74965, "GCACG":42539, "GCAGA":84056, "GCAGT":35494, "GCAGC":87018, "GCAGG":112074, "GCTAA":17500, "GCTAT":27278, "GCTAC":35233, "GCTAG":21271, "GCTTA":21864, "GCTTT":51555, "GCTTC":80442, "GCTTG":59008, "GCTCA":49987, "GCTCT":42712, "GCTCC":67632, "GCTCG":60287, "GCTGA":64397, "GCTGT":50590, "GCTGC":89056, "GCTGG":113817, "GCCAA":74859, "GCCAT":57468, "GCCAC":69402, "GCCAG":95565, "GCCTA":36248, "GCCTT":62484, "GCCTC":72060, "GCCTG":89426, "GCCCA":78809, "GCCCT":60711, "GCCCC":70084, "GCCCG":75223, "GCCGA":94595, "GCCGT":66943, "GCCGC":119008, "GCCGG":106663, "GCGAA":56357, "GCGAT":54651, "GCGAC":55080, "GCGAG":59151, "GCGTA":21749, "GCGTT":39873, "GCGTC":44408, "GCGTG":43473, "GCGCA":58286, "GCGCT":54458, "GCGCC":89504, "GCGCG":67526, "GCGGA":65328, "GCGGT":66462, "GCGGC":110104, "GCGGG":79758, "GGAAA":65446, "GGAAT":43088, "GGAAC":62323, "GGAAG":292405, "GGATA":38129, "GGATT":49743, "GGATC":51491, "GGATG":68817, "GGACA":47187, "GGACT":34615, "GGACC":44024, "GGACG":52227, "GGAGA":109565, "GGAGT":36612, "GGAGC":65313, "GGAGG":114561, "GGTAA":28475, "GGTAT":26824, "GGTAC":29135, "GGTAG":47079, "GGTTA":24522, "GGTTT":63033, "GGTTC":61017, "GGTTG":85209, "GGTCA":53297, "GGTCT":52823, "GGTCC":43614, "GGTCG":65763, "GGTGA":78323, "GGTGT":52784, "GGTGC":69965, "GGTGG":112301, "GGCAA":67415, "GGCAT":54734, "GGCAC":48394, "GGCAG":89219, "GGCTA":37769, "GGCTT":67767, "GGCTC":55948, "GGCTG":94869, "GGCCA":81553, "GGCCT":67369, "GGCCC":59649, "GGCCG":94784, "GGCGA":98051, "GGCGT":58475, "GGCGC":90209, "GGCGG":126449, "GGGAA":58437, "GGGAT":54015, "GGGAC":42480, "GGGAG":73215, "GGGTA":29739, "GGGTT":66284, "GGGTC":51399, "GGGTG":77093, "GGGCA":67788, "GGGCT":60588, "GGGCC":57210, "GGGCG":82545, "GGGGA":66659, "GGGGT":65661, "GGGGC":65222, "GGGGG":112823 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 926571, "total_bases": 56520831, "q20_bases": 55291048, "q30_bases": 52653171, "total_cycles": 61, "quality_curves": { "A":[39.3848,39.0743,39.1454,38.9411,39.0643,39.0867,38.9826,39.0438,39.0503,39.1074,39.0912,39.0896,39.1056,39.0985,39.0345,39.0372,39.1245,39.0705,39.1456,39.0152,38.394,39.0413,39.1001,39.1167,38.5788,39.0103,39.0505,38.4483,38.9308,38.1132,38.9844,39.0773,38.9895,39.0251,38.7524,38.7327,38.9888,39.0222,38.9296,39.0023,38.5985,38.3169,38.8204,38.7138,38.74,38.8348,38.7823,38.2696,38.7068,38.1989,38.1153,37.9051,38.4708,38.3237,38.0511,37.1432,36.9249,36.6122,36.4939,36.7158,36.0077], 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"GC":[0.63305,0.586919,0.610199,0.603807,0.599645,0.550132,0.559871,0.552277,0.538489,0.556572,0.559991,0.555664,0.565009,0.568113,0.562711,0.572048,0.568843,0.561415,0.567566,0.56422,0.561446,0.570299,0.569152,0.563674,0.570229,0.568453,0.562439,0.569047,0.565886,0.560169,0.56604,0.565672,0.560982,0.566178,0.56597,0.560239,0.565755,0.563653,0.560333,0.565809,0.564506,0.559285,0.564057,0.564666,0.560692,0.564007,0.565771,0.559683,0.565552,0.563516,0.557737,0.563787,0.56511,0.56062,0.564751,0.564764,0.559597,0.564786,0.562721,0.560417,0.564132,0.565565,0.559351,0.567122,0.56465,0.559664,0.567744,0.564764,0.561245,0.565476,0.562136,0.560364,0.565033,0.567524,0.562904,0.567243,0.563091,0.566263,0.56837,0.567993,0.567495,0.574895,0.571285,0.573253,0.582533,0.586513,0.587226,0.588548,0.582294,0.555177,0.511649] }, "kmer_count": { "AAAAA":57769, "AAAAT":37651, "AAAAC":45060, "AAAAG":48723, "AAATA":25957, "AAATT":27838, "AAATC":38698, "AAATG":31358, "AAACA":37259, "AAACT":27206, 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"CTTGA":45128, "CTTGT":43577, "CTTGC":45663, "CTTGG":51693, "CTCAA":38445, "CTCAT":32651, "CTCAC":30542, "CTCAG":34836, "CTCTA":19830, "CTCTT":43364, "CTCTC":37531, "CTCTG":36620, "CTCCA":61680, "CTCCT":94795, "CTCCC":62024, "CTCCG":53191, "CTCGA":48259, "CTCGT":37182, "CTCGC":46412, "CTCGG":51501, "CTGAA":41715, "CTGAT":39497, "CTGAC":33554, "CTGAG":34545, "CTGTA":17448, "CTGTT":48909, "CTGTC":32303, "CTGTG":33344, "CTGCA":47224, "CTGCT":90155, "CTGCC":73522, "CTGCG":51441, "CTGGA":65419, "CTGGT":65269, "CTGGC":72480, "CTGGG":68415, "CCAAA":54650, "CCAAT":35232, "CCAAC":69881, "CCAAG":51513, "CCATA":25474, "CCATT":35661, "CCATC":61316, "CCATG":44602, "CCACA":55406, "CCACT":31553, "CCACC":107879, "CCACG":51134, "CCAGA":54016, "CCAGT":46358, "CCAGC":99599, "CCAGG":75881, "CCTAA":15545, "CCTAT":19922, "CCTAC":27438, "CCTAG":13050, "CCTTA":17121, "CCTTT":47184, "CCTTC":76829, "CCTTG":62463, "CCTCA":48077, "CCTCT":44861, "CCTCC":105697, "CCTCG":62420, "CCTGA":48583, "CCTGT":49965, "CCTGC":101603, "CCTGG":76490, "CCCAA":60858, "CCCAT":42596, "CCCAC":68741, "CCCAG":71032, "CCCTA":22304, "CCCTT":42337, "CCCTC":58750, "CCCTG":59833, "CCCCA":70989, "CCCCT":51353, "CCCCC":54045, "CCCCG":59852, "CCCGA":50871, "CCCGT":35032, "CCCGC":71865, "CCCGG":63063, "CCGAA":49542, "CCGAT":46294, "CCGAC":53275, "CCGAG":51996, "CCGTA":23353, "CCGTT":35432, "CCGTC":50232, "CCGTG":39403, "CCGCA":55928, "CCGCT":52382, "CCGCC":115104, "CCGCG":61741, "CCGGA":55109, "CCGGT":56179, "CCGGC":91676, "CCGGG":60664, "CGAAA":41885, "CGAAT":29478, "CGAAC":41746, "CGAAG":58171, "CGATA":26575, "CGATT":33425, "CGATC":50997, "CGATG":59942, "CGACA":39824, "CGACT":35108, "CGACC":60417, "CGACG":57585, "CGAGA":44630, "CGAGT":24994, "CGAGC":49316, "CGAGG":60863, "CGTAA":18978, "CGTAT":14792, "CGTAC":17124, "CGTAG":22404, "CGTTA":12245, "CGTTT":30572, "CGTTC":38508, "CGTTG":39131, "CGTCA":35985, "CGTCT":32451, "CGTCC":45562, "CGTCG":55819, "CGTGA":31037, "CGTGT":20069, "CGTGC":34208, "CGTGG":48261, "CGCAA":35243, "CGCAT":27802, "CGCAC":38021, "CGCAG":49330, "CGCTA":16092, "CGCTT":38379, "CGCTC":43539, "CGCTG":60239, "CGCCA":70796, "CGCCT":69098, "CGCCC":74612, "CGCCG":107671, "CGCGA":40987, "CGCGT":28411, "CGCGC":55985, "CGCGG":61069, "CGGAA":45303, "CGGAT":38134, "CGGAC":31837, "CGGAG":50811, "CGGTA":28490, "CGGTT":42378, "CGGTC":47930, "CGGTG":63338, "CGGCA":65598, "CGGCT":66382, "CGGCC":79663, "CGGCG":104584, "CGGGA":46970, "CGGGT":45522, "CGGGC":59940, "CGGGG":56746, "GAAAA":59049, "GAAAT":43136, "GAAAC":42548, "GAAAG":48252, "GAATA":23184, "GAATT":31141, "GAATC":35763, "GAATG":30830, "GAACA":47761, "GAACT":39187, "GAACC":50332, "GAACG":36992, "GAAGA":74049, "GAAGT":38709, "GAAGC":67375, "GAAGG":69741, "GATAA":27043, "GATAT":26542, "GATAC":22300, "GATAG":25070, "GATTA":20170, "GATTT":41689, "GATTC":37186, "GATTG":37484, "GATCA":48243, "GATCT":41302, "GATCC":46226, "GATCG":49356, "GATGA":60547, "GATGT":38345, "GATGC":46580, "GATGG":61470, "GACAA":38374, "GACAT":30633, "GACAC":25767, "GACAG":31664, "GACTA":15527, "GACTT":35658, "GACTC":22796, "GACTG":30317, "GACCA":51525, "GACCT":42252, "GACCC":46836, "GACCG":49010, "GACGA":56504, "GACGT":27265, "GACGC":38994, "GACGG":48066, "GAGAA":60415, "GAGAT":42239, "GAGAC":38838, "GAGAG":36214, "GAGTA":17023, "GAGTT":32262, "GAGTC":21824, "GAGTG":22134, "GAGCA":53963, "GAGCT":35796, "GAGCC":47031, "GAGCG":41265, "GAGGA":86020, "GAGGT":47290, "GAGGC":59609, "GAGGG":50429, "GTAAA":18112, "GTAAT":16556, "GTAAC":17806, "GTAAG":13368, "GTATA":9774, "GTATT":19282, "GTATC":19967, "GTATG":17485, "GTACA":17275, "GTACT":15970, "GTACC":22315, "GTACG":18708, "GTAGA":22910, "GTAGT":19114, "GTAGC":25988, "GTAGG":24167, "GTTAA":11887, "GTTAT":18384, "GTTAC":22087, "GTTAG":12119, "GTTTA":15930, "GTTTT":44308, "GTTTC":42884, "GTTTG":45992, "GTTCA":38355, "GTTCT":42881, "GTTCC":56492, "GTTCG":43421, "GTTGA":45254, "GTTGT":42618, "GTTGC":44544, "GTTGG":68296, "GTCAA":33604, "GTCAT":30771, "GTCAC":28224, "GTCAG":30204, "GTCTA":14685, "GTCTT":37301, "GTCTC":38093, "GTCTG":33368, "GTCCA":39068, "GTCCT":42422, "GTCCC":37692, "GTCCG":32441, "GTCGA":46370, "GTCGT":39724, "GTCGC":44657, "GTCGG":49993, "GTGAA":38334, "GTGAT":38845, "GTGAC":26990, "GTGAG":27945, "GTGTA":13141, "GTGTT":34079, "GTGTC":23833, "GTGTG":29002, "GTGCA":28222, "GTGCT":39497, "GTGCC":41134, "GTGCG":34972, "GTGGA":47151, "GTGGT":63708, "GTGGC":56875, "GTGGG":59549, "GCAAA":38294, "GCAAT":31071, "GCAAC":42910, "GCAAG":42910, "GCATA":19034, "GCATT":29617, "GCATC":44333, "GCATG":33184, "GCACA":28314, "GCACT":21434, "GCACC":63077, "GCACG":34510, "GCAGA":47940, "GCAGT":30062, "GCAGC":73210, "GCAGG":93625, "GCTAA":12918, "GCTAT":21693, "GCTAC":28826, "GCTAG":12851, "GCTTA":15834, "GCTTT":43790, "GCTTC":68918, "GCTTG":49845, "GCTCA":40705, "GCTCT":35687, "GCTCC":58417, "GCTCG":50671, "GCTGA":52318, "GCTGT":41402, "GCTGC":76088, "GCTGG":96765, "GCCAA":59339, "GCCAT":47685, "GCCAC":58556, "GCCAG":70885, "GCCTA":21824, "GCCTT":52502, "GCCTC":62548, "GCCTG":75460, "GCCCA":64268, "GCCCT":51649, "GCCCC":60173, "GCCCG":62215, "GCCGA":76236, "GCCGT":56037, "GCCGC":99225, "GCCGG":89118, "GCGAA":44147, "GCGAT":45236, "GCGAC":45907, "GCGAG":44322, "GCGTA":16928, "GCGTT":33027, "GCGTC":36832, "GCGTG":36126, "GCGCA":45477, "GCGCT":44808, "GCGCC":75062, "GCGCG":54895, "GCGGA":52618, "GCGGT":56960, "GCGGC":92721, "GCGGG":67330, "GGAAA":51953, "GGAAT":36066, "GGAAC":53134, "GGAAG":66269, "GGATA":29563, "GGATT":42671, "GGATC":43730, "GGATG":57454, "GGACA":37975, "GGACT":28641, "GGACC":37514, "GGACG":43271, "GGAGA":70353, "GGAGT":31039, "GGAGC":54992, "GGAGG":95301, "GGTAA":21855, "GGTAT":22527, "GGTAC":23600, "GGTAG":31807, "GGTTA":19200, "GGTTT":54391, "GGTTC":51901, "GGTTG":74467, "GGTCA":42789, "GGTCT":44722, "GGTCC":36850, "GGTCG":55356, "GGTGA":61541, "GGTGT":45818, "GGTGC":58889, "GGTGG":96984, "GGCAA":54093, "GGCAT":45540, "GGCAC":40566, "GGCAG":66936, "GGCTA":29749, "GGCTT":57080, "GGCTC":47724, "GGCTG":80297, "GGCCA":65792, "GGCCT":56789, "GGCCC":49804, "GGCCG":78517, "GGCGA":79710, "GGCGT":48846, "GGCGC":73562, "GGCGG":108221, "GGGAA":46765, "GGGAT":45382, "GGGAC":35316, "GGGAG":53965, "GGGTA":22877, "GGGTT":57643, "GGGTC":43502, "GGGTG":65107, "GGGCA":55269, "GGGCT":51767, "GGGCC":48501, "GGGCG":69014, "GGGGA":53249, "GGGGT":55433, "GGGGC":55371, "GGGGG":46680 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-35A_S44_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-35A_S44_R2_001.fastq.gz -o AM-AL-35A.trim.R1.fastq.gz -O AM-AL-35A.trim.R2.fastq.gz -m --merged_out AM-AL-35A.trim.merged.fastq.gz " }