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"GAGAG":64485, "GAGTA":27745, "GAGTT":49597, "GAGTC":33744, "GAGTG":33843, "GAGCA":310089, "GAGCT":51487, "GAGCC":64327, "GAGCG":59101, "GAGGA":125608, "GAGGT":65373, "GAGGC":82349, "GAGGG":74480, "GTAAA":32894, "GTAAT":30619, "GTAAC":26149, "GTAAG":26654, "GTATA":18494, "GTATT":33343, "GTATC":30940, "GTATG":27781, "GTACA":29548, "GTACT":27990, "GTACC":34847, "GTACG":28117, "GTAGA":72335, "GTAGT":30275, "GTAGC":40544, "GTAGG":34504, "GTTAA":21077, "GTTAT":28973, "GTTAC":31515, "GTTAG":26455, "GTTTA":31830, "GTTTT":70520, "GTTTC":64221, "GTTTG":68112, "GTTCA":59647, "GTTCT":59446, "GTTCC":79141, "GTTCG":58258, "GTTGA":67596, "GTTGT":61824, "GTTGC":61207, "GTTGG":88109, "GTCAA":50484, "GTCAT":45354, "GTCAC":66976, "GTCAG":51597, "GTCTA":25838, "GTCTT":54083, "GTCTC":53426, "GTCTG":164607, "GTCCA":60888, "GTCCT":59299, "GTCCC":52605, "GTCCG":46755, "GTCGA":71246, "GTCGT":55623, "GTCGC":62738, "GTCGG":69869, "GTGAA":66113, "GTGAT":57207, "GTGAC":39958, "GTGAG":49600, "GTGTA":21195, "GTGTT":47995, "GTGTC":34441, "GTGTG":43583, "GTGCA":42057, "GTGCT":55568, "GTGCC":58032, "GTGCG":49154, "GTGGA":72788, "GTGGT":88297, "GTGGC":78098, "GTGGG":80943, "GCAAA":61637, "GCAAT":49024, "GCAAC":59707, "GCAAG":72689, "GCATA":32709, "GCATT":49808, "GCATC":63681, "GCATG":49606, "GCACA":246210, "GCACT":31128, "GCACC":88090, "GCACG":49283, "GCAGA":102169, "GCAGT":46562, "GCAGC":104075, "GCAGG":123864, "GCTAA":22699, "GCTAT":32001, "GCTAC":42759, "GCTAG":29665, "GCTTA":28194, "GCTTT":63357, "GCTTC":96125, "GCTTG":72116, "GCTCA":58720, "GCTCT":54606, "GCTCC":78458, "GCTCG":73881, "GCTGA":77243, "GCTGT":58712, "GCTGC":107162, "GCTGG":127047, "GCCAA":86808, "GCCAT":66816, "GCCAC":81090, "GCCAG":110641, "GCCTA":31256, "GCCTT":72545, "GCCTC":84123, "GCCTG":101431, "GCCCA":94027, "GCCCT":75263, "GCCCC":84791, "GCCCG":91560, "GCCGA":114448, "GCCGT":77109, "GCCGC":145214, "GCCGG":122986, "GCGAA":66290, "GCGAT":67419, "GCGAC":64917, "GCGAG":68254, "GCGTA":26500, "GCGTT":47055, "GCGTC":54029, "GCGTG":50963, "GCGCA":64103, "GCGCT":61401, "GCGCC":97880, "GCGCG":78781, "GCGGA":78994, "GCGGT":83383, "GCGGC":135901, "GCGGG":97682, "GGAAA":81296, "GGAAT":58251, "GGAAC":72957, "GGAAG":398242, "GGATA":48968, "GGATT":68396, "GGATC":65074, "GGATG":80376, "GGACA":53875, "GGACT":46088, "GGACC":50920, "GGACG":62362, "GGAGA":137174, "GGAGT":49123, "GGAGC":74404, "GGAGG":134106, "GGTAA":37606, "GGTAT":37677, "GGTAC":36656, "GGTAG":58258, "GGTTA":31428, "GGTTT":80612, "GGTTC":70827, "GGTTG":96766, "GGTCA":63690, "GGTCT":62479, "GGTCC":51702, "GGTCG":76891, "GGTGA":91908, "GGTGT":62651, "GGTGC":81449, "GGTGG":139932, "GGCAA":82398, "GGCAT":66360, "GGCAC":57531, "GGCAG":104155, "GGCTA":42680, "GGCTT":82016, "GGCTC":65987, "GGCTG":108520, "GGCCA":93860, "GGCCT":78544, "GGCCC":73378, "GGCCG":113906, "GGCGA":114371, "GGCGT":66307, "GGCGC":97544, "GGCGG":157605, "GGGAA":68614, "GGGAT":65758, "GGGAC":50058, "GGGAG":89188, "GGGTA":37654, "GGGTT":80276, "GGGTC":59004, "GGGTG":87244, "GGGCA":79657, "GGGCT":72481, "GGGCC":71264, "GGGCG":98611, "GGGGA":77996, "GGGGT":74026, "GGGGC":77802, "GGGGG":155046 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1174513, "total_bases": 71645293, "q20_bases": 69960659, "q30_bases": 66591597, "total_cycles": 61, "quality_curves": { "A":[39.3737,39.0934,39.1312,38.9868,39.0787,39.0952,39.0609,39.0779,39.1936,39.1646,39.122,39.1622,39.1832,39.1786,39.0811,39.0689,39.1542,39.0945,39.2099,39.0926,38.4224,39.0803,39.1144,39.147,38.5423,39.0542,39.0816,38.3453,38.9302,38.0187,39.0156,39.1113,39.0191,39.0716,38.9243,39.0103,38.6399,39.0519,38.9763,38.5881,38.8658,38.2195,38.8246,38.7136,38.6994,38.831,38.7958,38.1576,38.6955,38.159,38.1019,37.84,38.4659,38.3045,38.0592,37.0168,36.7268,36.3717,36.2212,36.482,35.6646], 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"GC":[0.596095,0.567653,0.601258,0.590578,0.588907,0.532501,0.544393,0.528966,0.523946,0.539045,0.54432,0.539157,0.544009,0.553107,0.546274,0.552958,0.553884,0.546014,0.550818,0.552135,0.546404,0.553493,0.554164,0.54669,0.554205,0.555057,0.546931,0.550574,0.555167,0.547248,0.551606,0.553299,0.545841,0.553533,0.550849,0.546375,0.550765,0.55067,0.544454,0.550992,0.551672,0.545214,0.550995,0.550398,0.545043,0.547638,0.552148,0.544014,0.550046,0.549098,0.544447,0.55139,0.551904,0.546528,0.551767,0.54791,0.547692,0.55144,0.54896,0.545512,0.549546,0.553454,0.550407,0.551411,0.552136,0.545974,0.551508,0.548698,0.548184,0.556238,0.552842,0.543548,0.558006,0.555972,0.552323,0.557582,0.555095,0.556977,0.555976,0.560643,0.56174,0.560647,0.56075,0.565458,0.575648,0.577538,0.588345,0.591154,0.580008,0.533298,0.514214] }, "kmer_count": { "AAAAA":88979, "AAAAT":60222, "AAAAC":57011, "AAAAG":60732, "AAATA":41913, "AAATT":49576, "AAATC":57394, "AAATG":45455, "AAACA":46194, "AAACT":39560, "AAACC":67424, 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"CTTGT":51621, "CTTGC":53779, "CTTGG":64806, "CTCAA":50883, "CTCAT":42183, "CTCAC":42430, "CTCAG":39942, "CTCTA":27581, "CTCTT":59150, "CTCTC":54426, "CTCTG":48334, "CTCCA":80663, "CTCCT":110986, "CTCCC":78831, "CTCCG":63226, "CTCGA":56208, "CTCGT":46023, "CTCGC":54450, "CTCGG":63468, "CTGAA":53172, "CTGAT":48911, "CTGAC":41102, "CTGAG":40140, "CTGTA":22308, "CTGTT":57929, "CTGTC":37493, "CTGTG":38134, "CTGCA":59116, "CTGCT":106997, "CTGCC":86620, "CTGCG":57123, "CTGGA":75734, "CTGGT":77436, "CTGGC":82948, "CTGGG":75598, "CCAAA":74322, "CCAAT":47702, "CCAAC":78077, "CCAAG":64819, "CCATA":32208, "CCATT":49686, "CCATC":73402, "CCATG":53737, "CCACA":63788, "CCACT":38404, "CCACC":136731, "CCACG":57075, "CCAGA":64866, "CCAGT":55138, "CCAGC":110041, "CCAGG":85953, "CCTAA":19703, "CCTAT":24829, "CCTAC":32318, "CCTAG":14045, "CCTTA":20149, "CCTTT":63065, "CCTTC":91192, "CCTTG":72366, "CCTCA":63058, "CCTCT":57851, "CCTCC":128377, "CCTCG":71521, "CCTGA":59158, "CCTGT":56377, "CCTGC":119603, "CCTGG":87538, "CCCAA":76856, "CCCAT":51640, "CCCAC":81193, "CCCAG":79865, "CCCTA":25275, "CCCTT":56731, "CCCTC":76690, "CCCTG":70579, "CCCCA":82633, "CCCCT":63938, "CCCCC":69665, "CCCCG":71947, "CCCGA":59424, "CCCGT":43834, "CCCGC":91394, "CCCGG":75254, "CCGAA":59712, "CCGAT":58263, "CCGAC":63866, "CCGAG":64906, "CCGTA":30736, "CCGTT":43791, "CCGTC":60892, "CCGTG":47465, "CCGCA":65928, "CCGCT":64718, "CCGCC":147502, "CCGCG":79450, "CCGGA":64099, "CCGGT":68393, "CCGGC":105073, "CCGGG":72940, "CGAAA":49962, "CGAAT":41375, "CGAAC":46136, "CGAAG":67369, "CGATA":33274, "CGATT":44358, "CGATC":66782, "CGATG":70196, "CGACA":46415, "CGACT":40894, "CGACC":72472, "CGACG":71794, "CGAGA":53562, "CGAGT":30117, "CGAGC":59309, "CGAGG":67545, "CGTAA":24196, "CGTAT":18735, "CGTAC":22336, "CGTAG":30041, "CGTTA":16322, "CGTTT":37524, "CGTTC":46146, "CGTTG":46542, "CGTCA":41843, "CGTCT":38410, "CGTCC":55147, "CGTCG":67579, "CGTGA":41972, "CGTGT":24615, "CGTGC":39537, "CGTGG":52876, "CGCAA":42264, "CGCAT":34434, "CGCAC":46147, "CGCAG":55762, "CGCTA":20143, "CGCTT":44242, "CGCTC":53029, "CGCTG":68156, "CGCCA":82733, "CGCCT":78125, "CGCCC":92587, "CGCCG":129665, "CGCGA":48495, "CGCGT":34858, "CGCGC":66501, "CGCGG":78286, "CGGAA":54634, "CGGAT":49932, "CGGAC":37499, "CGGAG":58459, "CGGTA":35637, "CGGTT":51850, "CGGTC":58669, "CGGTG":80553, "CGGCA":79250, "CGGCT":76944, "CGGCC":96162, "CGGCG":122815, "CGGGA":55509, "CGGGT":54552, "CGGGC":72989, "CGGGG":64859, "GAAAA":76809, "GAAAT":57885, "GAAAC":51924, "GAAAG":59017, "GAATA":32755, "GAATT":48164, "GAATC":48921, "GAATG":41180, "GAACA":51851, "GAACT":49183, "GAACC":59157, "GAACG":43825, "GAAGA":88202, "GAAGT":47327, "GAAGC":76698, "GAAGG":79149, "GATAA":36814, "GATAT":35775, "GATAC":26977, "GATAG":31136, "GATTA":27085, "GATTT":65687, "GATTC":52550, "GATTG":47107, "GATCA":60810, "GATCT":63622, "GATCC":58243, "GATCG":61877, "GATGA":79955, "GATGT":45149, "GATGC":54586, "GATGG":71923, "GACAA":46524, "GACAT":37598, "GACAC":31169, "GACAG":36468, "GACTA":18641, "GACTT":45769, "GACTC":30091, "GACTG":34609, "GACCA":61046, "GACCT":50206, "GACCC":54680, "GACCG":60355, "GACGA":65610, "GACGT":32005, "GACGC":47650, "GACGG":57963, "GAGAA":71594, "GAGAT":60914, "GAGAC":46391, "GAGAG":48864, "GAGTA":22143, "GAGTT":41983, "GAGTC":27890, "GAGTG":28511, "GAGCA":64231, "GAGCT":42801, "GAGCC":53864, "GAGCG":48371, "GAGGA":103876, "GAGGT":53163, "GAGGC":68706, "GAGGG":62482, "GTAAA":27444, "GTAAT":26230, "GTAAC":21351, "GTAAG":18257, "GTATA":14570, "GTATT":27987, "GTATC":25350, "GTATG":23499, "GTACA":24213, "GTACT":23929, "GTACC":30171, "GTACG":22892, "GTAGA":33229, "GTAGT":25289, "GTAGC":34153, "GTAGG":28712, "GTTAA":16992, "GTTAT":24558, "GTTAC":26917, "GTTAG":15442, "GTTTA":25177, "GTTTT":59796, "GTTTC":53567, "GTTTG":58359, "GTTCA":48711, "GTTCT":50001, "GTTCC":67033, "GTTCG":48263, "GTTGA":55670, "GTTGT":53824, "GTTGC":51427, "GTTGG":76192, "GTCAA":40074, "GTCAT":37443, "GTCAC":34844, "GTCAG":37151, "GTCTA":19859, "GTCTT":44972, "GTCTC":46421, "GTCTG":40299, "GTCCA":49974, "GTCCT":49763, "GTCCC":45544, "GTCCG":39421, "GTCGA":57605, "GTCGT":45741, "GTCGC":52363, "GTCGG":58112, "GTGAA":53251, "GTGAT":46482, "GTGAC":32963, "GTGAG":37616, "GTGTA":16741, "GTGTT":40779, "GTGTC":28905, "GTGTG":37292, "GTGCA":33149, "GTGCT":46771, "GTGCC":49058, "GTGCG":41225, "GTGGA":59213, "GTGGT":75934, "GTGGC":65900, "GTGGG":67500, "GCAAA":48524, "GCAAT":40891, "GCAAC":49793, "GCAAG":52072, "GCATA":26126, "GCATT":42107, "GCATC":51911, "GCATG":41200, "GCACA":35755, "GCACT":25900, "GCACC":74381, "GCACG":40389, "GCAGA":53929, "GCAGT":39818, "GCAGC":88121, "GCAGG":103546, "GCTAA":17147, "GCTAT":25413, "GCTAC":36016, "GCTAG":16504, "GCTTA":20786, "GCTTT":53622, "GCTTC":81296, "GCTTG":60143, "GCTCA":46833, "GCTCT":46451, "GCTCC":67207, "GCTCG":62591, "GCTGA":61326, "GCTGT":48268, "GCTGC":90174, "GCTGG":106684, "GCCAA":68522, "GCCAT":55075, "GCCAC":68584, "GCCAG":80282, "GCCTA":22732, "GCCTT":60740, "GCCTC":72391, "GCCTG":85379, "GCCCA":75841, "GCCCT":64288, "GCCCC":72455, "GCCCG":76763, "GCCGA":92470, "GCCGT":64713, "GCCGC":121561, "GCCGG":101921, "GCGAA":51253, "GCGAT":55519, "GCGAC":53382, "GCGAG":49763, "GCGTA":20335, "GCGTT":39279, "GCGTC":44658, "GCGTG":41559, "GCGCA":49631, "GCGCT":49999, "GCGCC":81501, "GCGCG":64415, "GCGGA":62957, "GCGGT":71385, "GCGGC":113754, "GCGGG":81512, "GGAAA":64212, "GGAAT":48975, "GGAAC":61374, "GGAAG":74640, "GGATA":37232, "GGATT":58619, "GGATC":54558, "GGATG":66624, "GGACA":42682, "GGACT":38541, "GGACC":42577, "GGACG":51347, "GGAGA":86018, "GGAGT":41794, "GGAGC":62128, "GGAGG":111949, "GGTAA":29707, "GGTAT":31671, "GGTAC":30269, "GGTAG":37342, "GGTTA":23868, "GGTTT":68578, "GGTTC":59673, "GGTTG":82893, "GGTCA":50953, "GGTCT":52660, "GGTCC":42994, "GGTCG":64280, "GGTGA":73478, "GGTGT":53754, "GGTGC":68826, "GGTGG":120090, "GGCAA":64748, "GGCAT":55275, "GGCAC":47487, "GGCAG":76010, "GGCTA":32654, "GGCTT":68856, "GGCTC":56254, "GGCTG":90239, "GGCCA":74151, "GGCCT":66135, "GGCCC":62045, "GGCCG":94051, "GGCGA":91498, "GGCGT":55406, "GGCGC":79357, "GGCGG":133250, "GGGAA":53714, "GGGAT":54633, "GGGAC":41108, "GGGAG":65096, "GGGTA":28466, "GGGTT":68635, "GGGTC":49543, "GGGTG":73352, "GGGCA":62909, "GGGCT":61806, "GGGCC":60061, "GGGCG":82093, "GGGGA":60884, "GGGGT":61792, "GGGGC":65226, "GGGGG":55936 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-34C_S43_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-34C_S43_R2_001.fastq.gz -o AM-AL-34C.trim.R1.fastq.gz -O AM-AL-34C.trim.R2.fastq.gz -m --merged_out AM-AL-34C.trim.merged.fastq.gz " }