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"CACGA":53817, "CACGT":257628, "CACGC":49297, "CACGG":51039, "CAGAA":63149, "CAGAT":171677, "CAGAC":40049, "CAGAG":52249, "CAGTA":30445, "CAGTT":48206, "CAGTC":81201, "CAGTG":30270, "CAGCA":102036, "CAGCT":56850, "CAGCC":97550, "CAGCG":67374, "CAGGA":105011, "CAGGT":62050, "CAGGC":84789, "CAGGG":67086, "CTAAA":24962, "CTAAT":15636, "CTAAC":16622, "CTAAG":20629, "CTATA":16756, "CTATT":26992, "CTATC":32510, "CTATG":24210, "CTACA":31449, "CTACT":30017, "CTACC":46107, "CTACG":34625, "CTAGA":53929, "CTAGT":12857, "CTAGC":18944, "CTAGG":14700, "CTTAA":17289, "CTTAT":27905, "CTTAC":20619, "CTTAG":26351, "CTTTA":36077, "CTTTT":73816, "CTTTC":71592, "CTTTG":61989, "CTTCA":80057, "CTTCT":90836, "CTTCC":88667, "CTTCG":74069, "CTTGA":62364, "CTTGT":53108, "CTTGC":55361, "CTTGG":66761, "CTCAA":55509, "CTCAT":43521, "CTCAC":45070, "CTCAG":49027, "CTCTA":29727, "CTCTT":60362, "CTCTC":55796, "CTCTG":50403, "CTCCA":152167, "CTCCT":113833, "CTCCC":80005, "CTCCG":64513, "CTCGA":59271, "CTCGT":46989, "CTCGC":55297, "CTCGG":64767, "CTGAA":183501, "CTGAT":50530, "CTGAC":43212, "CTGAG":49155, "CTGTA":26044, "CTGTT":58899, "CTGTC":38594, "CTGTG":37931, "CTGCA":63573, "CTGCT":109658, "CTGCC":88067, "CTGCG":58557, "CTGGA":82157, "CTGGT":80299, "CTGGC":84810, "CTGGG":89641, "CCAAA":92847, "CCAAT":49299, "CCAAC":81513, "CCAAG":83534, "CCATA":37023, "CCATT":50857, "CCATC":76081, "CCATG":56796, "CCACA":71342, "CCACT":39254, "CCACC":143863, "CCACG":60611, "CCAGA":115926, "CCAGT":106421, "CCAGC":116434, "CCAGG":91721, "CCTAA":22446, "CCTAT":25506, "CCTAC":35240, "CCTAG":29119, "CCTTA":24591, "CCTTT":64690, "CCTTC":93774, "CCTTG":74108, "CCTCA":69905, "CCTCT":58700, "CCTCC":133601, "CCTCG":73192, "CCTGA":64157, "CCTGT":57645, "CCTGC":121235, "CCTGG":91750, "CCCAA":86340, "CCCAT":53612, "CCCAC":86186, "CCCAG":98161, "CCCTA":30581, "CCCTT":57474, "CCCTC":80631, "CCCTG":73448, "CCCCA":92537, "CCCCT":66091, "CCCCC":78058, "CCCCG":75286, "CCCGA":65041, "CCCGT":45932, "CCCGC":94174, "CCCGG":78780, "CCGAA":67636, "CCGAT":59882, "CCGAC":67173, "CCGAG":80268, "CCGTA":36613, "CCGTT":45173, "CCGTC":62800, "CCGTG":49948, "CCGCA":73012, "CCGCT":65764, "CCGCC":150118, "CCGCG":83810, "CCGGA":71611, "CCGGT":69901, "CCGGC":109951, "CCGGG":76163, "CGAAA":56294, "CGAAT":42542, "CGAAC":49919, "CGAAG":82808, "CGATA":38449, "CGATT":44840, "CGATC":69774, "CGATG":73169, "CGACA":51108, "CGACT":40995, "CGACC":76274, "CGACG":75670, "CGAGA":84401, "CGAGT":31683, "CGAGC":65832, "CGAGG":72335, "CGTAA":27543, "CGTAT":19521, "CGTAC":23690, "CGTAG":41690, "CGTTA":19575, "CGTTT":38786, "CGTTC":48140, "CGTTG":47610, "CGTCA":46423, "CGTCT":211260, "CGTCC":72221, "CGTCG":70010, "CGTGA":47923, "CGTGT":25034, "CGTGC":40471, "CGTGG":56373, "CGCAA":45437, "CGCAT":35277, "CGCAC":49426, "CGCAG":68944, "CGCTA":23900, "CGCTT":45844, "CGCTC":54824, "CGCTG":70886, "CGCCA":90445, "CGCCT":79790, "CGCCC":95419, "CGCCG":132686, "CGCGA":53664, "CGCGT":36671, "CGCGC":69788, "CGCGG":83293, "CGGAA":456774, "CGGAT":52485, "CGGAC":40342, "CGGAG":72645, "CGGTA":41229, "CGGTT":51027, "CGGTC":60660, "CGGTG":83114, "CGGCA":88207, "CGGCT":77942, "CGGCC":99757, "CGGCG":128938, "CGGGA":60925, "CGGGT":55904, "CGGGC":75864, "CGGGG":68958, "GAAAA":82185, "GAAAT":60696, "GAAAC":54499, "GAAAG":69650, "GAATA":36296, "GAATT":49668, "GAATC":51199, "GAATG":42306, "GAACA":57790, "GAACT":151340, "GAACC":61181, "GAACG":46320, "GAAGA":483165, "GAAGT":49905, "GAAGC":80038, "GAAGG":84292, "GATAA":40567, "GATAT":37073, "GATAC":28537, "GATAG":43709, "GATTA":29897, "GATTT":68150, "GATTC":54690, "GATTG":48116, "GATCA":68474, "GATCT":67173, "GATCC":60891, "GATCG":518243, "GATGA":87159, "GATGT":46481, "GATGC":56472, "GATGG":74730, "GACAA":50562, "GACAT":39418, "GACAC":32403, "GACAG":46297, "GACTA":21150, "GACTT":47659, "GACTC":31627, "GACTG":36838, "GACCA":66882, "GACCT":52665, "GACCC":57158, "GACCG":64389, "GACGA":70594, "GACGT":34425, "GACGC":50514, "GACGG":59296, "GAGAA":76975, "GAGAT":169289, "GAGAC":48551, "GAGAG":59852, "GAGTA":24636, "GAGTT":43334, "GAGTC":28606, "GAGTG":29333, "GAGCA":368608, "GAGCT":44592, "GAGCC":57697, "GAGCG":51529, "GAGGA":113744, "GAGGT":55355, "GAGGC":72484, "GAGGG":66085, "GTAAA":29120, "GTAAT":27369, "GTAAC":23481, "GTAAG":24496, "GTATA":16221, "GTATT":28810, "GTATC":26337, "GTATG":24463, "GTACA":27533, "GTACT":25269, "GTACC":31609, "GTACG":24174, "GTAGA":76412, "GTAGT":26781, "GTAGC":35974, "GTAGG":30041, "GTTAA":18126, "GTTAT":24804, "GTTAC":26727, "GTTAG":26675, "GTTTA":29311, "GTTTT":59794, "GTTTC":55684, "GTTTG":57400, "GTTCA":52886, "GTTCT":49766, "GTTCC":69221, "GTTCG":49979, "GTTGA":58954, "GTTGT":53336, "GTTGC":52657, "GTTGG":76059, "GTCAA":44121, "GTCAT":38086, "GTCAC":67359, "GTCAG":46073, "GTCTA":24134, "GTCTT":45428, "GTCTC":46105, "GTCTG":195210, "GTCCA":68869, "GTCCT":52335, "GTCCC":45771, "GTCCG":40843, "GTCGA":62201, "GTCGT":48077, "GTCGC":54708, "GTCGG":59953, "GTGAA":58599, "GTGAT":50048, "GTGAC":34667, "GTGAG":44993, "GTGTA":19294, "GTGTT":41571, "GTGTC":29104, "GTGTG":36918, "GTGCA":37335, "GTGCT":46766, "GTGCC":49961, "GTGCG":43070, "GTGGA":66174, "GTGGT":76156, "GTGGC":67340, "GTGGG":69270, "GCAAA":51905, "GCAAT":41230, "GCAAC":51010, "GCAAG":64394, "GCATA":29543, "GCATT":43816, "GCATC":53782, "GCATG":44165, "GCACA":301671, "GCACT":27115, "GCACC":79085, "GCACG":43233, "GCAGA":97602, "GCAGT":40072, "GCAGC":93429, "GCAGG":112211, "GCTAA":20211, "GCTAT":25548, "GCTAC":37649, "GCTAG":29274, "GCTTA":25960, "GCTTT":53652, "GCTTC":83349, "GCTTG":61834, "GCTCA":51443, "GCTCT":47912, "GCTCC":67347, "GCTCG":64667, "GCTGA":66548, "GCTGT":47925, "GCTGC":92694, "GCTGG":111381, "GCCAA":75183, "GCCAT":56863, "GCCAC":71806, "GCCAG":98882, "GCCTA":28213, "GCCTT":62806, "GCCTC":73727, "GCCTG":88743, "GCCCA":84988, "GCCCT":66508, "GCCCC":75841, "GCCCG":80078, "GCCGA":100042, "GCCGT":67702, "GCCGC":125265, "GCCGG":107446, "GCGAA":58608, "GCGAT":57169, "GCGAC":57006, "GCGAG":60866, "GCGTA":23569, "GCGTT":39894, "GCGTC":46210, "GCGTG":44723, "GCGCA":55820, "GCGCT":52570, "GCGCC":84828, "GCGCG":68376, "GCGGA":70679, "GCGGT":73379, "GCGGC":119235, "GCGGG":85870, "GGAAA":72407, "GGAAT":51734, "GGAAC":65845, "GGAAG":464509, "GGATA":42947, "GGATT":60802, "GGATC":58416, "GGATG":69256, "GGACA":47876, "GGACT":42326, "GGACC":45168, "GGACG":54359, "GGAGA":130822, "GGAGT":43024, "GGAGC":65725, "GGAGG":121932, "GGTAA":33694, "GGTAT":32393, "GGTAC":32547, "GGTAG":55969, "GGTTA":27007, "GGTTT":69389, "GGTTC":60046, "GGTTG":83466, "GGTCA":55565, "GGTCT":53497, "GGTCC":44562, "GGTCG":67600, "GGTGA":80855, "GGTGT":54013, "GGTGC":72518, "GGTGG":123428, "GGCAA":71351, "GGCAT":57495, "GGCAC":51382, "GGCAG":95338, "GGCTA":36342, "GGCTT":70582, "GGCTC":57231, "GGCTG":93099, "GGCCA":82358, "GGCCT":68224, "GGCCC":64982, "GGCCG":99604, "GGCGA":100666, "GGCGT":56975, "GGCGC":84630, "GGCGG":138887, "GGGAA":59915, "GGGAT":57087, "GGGAC":44502, "GGGAG":79603, "GGGTA":34335, "GGGTT":68672, "GGGTC":51491, "GGGTG":77414, "GGGCA":71238, "GGGCT":62994, "GGGCC":61801, "GGGCG":87117, "GGGGA":69042, "GGGGT":65726, "GGGGC":69123, "GGGGG":169069 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1074289, "total_bases": 65531629, "q20_bases": 63837390, "q30_bases": 60683910, "total_cycles": 61, "quality_curves": { "A":[39.3036,39.153,39.1346,39.0147,38.9851,39.2067,39.073,39.106,39.1901,39.1703,39.1434,39.1426,39.1656,39.1735,39.0733,39.0694,39.1571,39.0974,39.2167,39.0848,38.3761,39.0743,39.1362,39.153,38.4888,39.0416,39.0863,38.2957,38.9349,37.9186,39.0571,39.1604,39.0448,39.0898,38.2369,38.8256,38.3206,39.037,38.9973,39.0087,38.8899,38.7788,38.8045,38.6681,38.6678,38.7807,38.7711,37.9899,38.5631,37.9425,37.7703,37.5531,38.1706,37.9977,37.6148,36.4069,36.0879,35.6268,35.414,35.6382,34.6618], 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"CTTGT":47610, "CTTGC":49539, "CTTGG":60652, "CTCAA":47985, "CTCAT":39003, "CTCAC":40486, "CTCAG":36928, "CTCTA":24979, "CTCTT":53979, "CTCTC":50867, "CTCTG":45648, "CTCCA":75884, "CTCCT":104185, "CTCCC":73314, "CTCCG":58089, "CTCGA":50886, "CTCGT":42284, "CTCGC":49316, "CTCGG":58064, "CTGAA":48957, "CTGAT":44572, "CTGAC":38156, "CTGAG":36389, "CTGTA":20848, "CTGTT":52415, "CTGTC":33989, "CTGTG":33352, "CTGCA":53812, "CTGCT":99561, "CTGCC":79395, "CTGCG":51042, "CTGGA":70160, "CTGGT":72263, "CTGGC":74821, "CTGGG":69999, "CCAAA":69248, "CCAAT":44941, "CCAAC":73365, "CCAAG":61373, "CCATA":30128, "CCATT":46546, "CCATC":67041, "CCATG":49475, "CCACA":60762, "CCACT":35020, "CCACC":130588, "CCACG":52924, "CCAGA":59326, "CCAGT":49787, "CCAGC":102021, "CCAGG":80458, "CCTAA":17942, "CCTAT":22733, "CCTAC":31256, "CCTAG":13469, "CCTTA":18247, "CCTTT":58896, "CCTTC":83346, "CCTTG":66628, "CCTCA":60026, "CCTCT":52836, "CCTCC":121964, "CCTCG":65484, "CCTGA":53544, "CCTGT":51231, "CCTGC":109016, "CCTGG":81329, "CCCAA":73786, "CCCAT":47889, "CCCAC":77329, "CCCAG":74099, "CCCTA":23651, "CCCTT":52386, "CCCTC":72615, "CCCTG":65229, "CCCCA":78911, "CCCCT":59744, "CCCCC":66034, "CCCCG":66430, "CCCGA":54645, "CCCGT":40174, "CCCGC":83380, "CCCGG":69949, "CCGAA":54971, "CCGAT":52748, "CCGAC":58832, "CCGAG":62671, "CCGTA":29259, "CCGTT":40070, "CCGTC":54696, "CCGTG":44300, "CCGCA":59426, "CCGCT":58410, "CCGCC":133654, "CCGCG":73978, "CCGGA":60183, "CCGGT":61759, "CCGGC":97066, "CCGGG":67031, "CGAAA":46482, "CGAAT":38088, "CGAAC":42286, "CGAAG":61423, "CGATA":30366, "CGATT":39527, "CGATC":60952, "CGATG":63861, "CGACA":41790, "CGACT":36797, "CGACC":67487, "CGACG":66490, "CGAGA":50802, "CGAGT":27862, "CGAGC":57376, "CGAGG":62499, "CGTAA":22453, "CGTAT":17185, "CGTAC":20847, "CGTAG":28078, "CGTTA":14979, "CGTTT":33872, "CGTTC":41981, "CGTTG":41839, "CGTCA":38138, "CGTCT":34907, "CGTCC":50647, "CGTCG":60620, "CGTGA":41397, "CGTGT":22038, "CGTGC":35137, "CGTGG":49332, "CGCAA":37833, "CGCAT":31085, "CGCAC":42809, "CGCAG":49883, "CGCTA":18686, "CGCTT":39708, "CGCTC":48109, "CGCTG":60722, "CGCCA":74584, "CGCCT":70978, "CGCCC":85136, "CGCCG":116719, "CGCGA":44728, "CGCGT":32034, "CGCGC":59970, "CGCGG":72744, "CGGAA":52036, "CGGAT":46622, "CGGAC":35233, "CGGAG":54596, "CGGTA":32364, "CGGTT":45915, "CGGTC":53883, "CGGTG":73206, "CGGCA":72629, "CGGCT":69558, "CGGCC":88568, "CGGCG":111925, "CGGGA":51342, "CGGGT":50274, "CGGGC":67026, "CGGGG":60210, "GAAAA":70434, "GAAAT":54788, "GAAAC":48379, "GAAAG":54929, "GAATA":30472, "GAATT":45354, "GAATC":46283, "GAATG":37614, "GAACA":47994, "GAACT":46028, "GAACC":54175, "GAACG":40673, "GAAGA":80071, "GAAGT":43649, "GAAGC":70614, "GAAGG":73930, "GATAA":34523, "GATAT":32944, "GATAC":25024, "GATAG":28341, "GATTA":24577, "GATTT":61964, "GATTC":49465, "GATTG":42610, "GATCA":57886, "GATCT":61010, "GATCC":54338, "GATCG":57450, "GATGA":75463, "GATGT":41430, "GATGC":49498, "GATGG":66609, "GACAA":42930, "GACAT":34681, "GACAC":28491, "GACAG":32892, "GACTA":17271, "GACTT":43038, "GACTC":27872, "GACTG":31937, "GACCA":56476, "GACCT":46357, "GACCC":51106, "GACCG":57074, "GACGA":60469, "GACGT":29982, "GACGC":43756, "GACGG":53273, "GAGAA":65829, "GAGAT":59696, "GAGAC":43089, "GAGAG":46491, "GAGTA":20245, "GAGTT":38629, "GAGTC":25143, "GAGTG":26233, "GAGCA":59986, "GAGCT":39469, "GAGCC":51076, "GAGCG":44483, "GAGGA":98131, "GAGGT":48250, "GAGGC":63732, "GAGGG":58261, "GTAAA":25755, "GTAAT":25042, "GTAAC":20306, "GTAAG":16325, "GTATA":13695, "GTATT":26400, "GTATC":23191, "GTATG":21926, "GTACA":23507, "GTACT":22759, "GTACC":28090, "GTACG":21154, "GTAGA":31109, "GTAGT":23972, "GTAGC":31724, "GTAGG":26250, "GTTAA":15270, "GTTAT":22467, "GTTAC":23882, "GTTAG":14564, "GTTTA":23717, "GTTTT":54018, "GTTTC":49465, "GTTTG":51942, "GTTCA":45669, "GTTCT":44304, "GTTCC":61510, "GTTCG":43938, "GTTGA":51648, "GTTGT":48395, "GTTGC":46581, "GTTGG":68833, "GTCAA":37025, "GTCAT":33602, "GTCAC":31115, "GTCAG":33669, "GTCTA":18887, "GTCTT":39905, "GTCTC":42571, "GTCTG":35554, "GTCCA":46956, "GTCCT":46151, "GTCCC":41226, "GTCCG":36032, "GTCGA":52475, "GTCGT":41416, "GTCGC":47915, "GTCGG":52392, "GTGAA":50082, "GTGAT":43472, "GTGAC":30130, "GTGAG":34296, "GTGTA":15606, "GTGTT":37030, "GTGTC":25432, "GTGTG":33239, "GTGCA":30849, "GTGCT":41066, "GTGCC":44267, "GTGCG":37771, "GTGGA":56999, "GTGGT":68718, "GTGGC":59849, "GTGGG":61266, "GCAAA":43342, "GCAAT":36995, "GCAAC":45051, "GCAAG":47244, "GCATA":24080, "GCATT":39347, "GCATC":46670, "GCATG":38749, "GCACA":33840, "GCACT":24078, "GCACC":69819, "GCACG":37295, "GCAGA":48709, "GCAGT":35725, "GCAGC":82540, "GCAGG":98399, "GCTAA":15932, "GCTAT":22136, "GCTAC":33631, "GCTAG":16051, "GCTTA":19384, "GCTTT":47683, "GCTTC":74569, "GCTTG":54842, "GCTCA":43467, "GCTCT":42568, "GCTCC":60773, "GCTCG":56995, "GCTGA":55747, "GCTGT":41981, "GCTGC":82204, "GCTGG":98123, "GCCAA":62079, "GCCAT":49720, "GCCAC":63613, "GCCAG":72243, "GCCTA":21138, "GCCTT":56180, "GCCTC":66559, "GCCTG":78035, "GCCCA":71054, "GCCCT":59640, "GCCCC":68072, "GCCCG":70001, "GCCGA":84368, "GCCGT":59866, "GCCGC":109681, "GCCGG":93751, "GCGAA":47587, "GCGAT":49735, "GCGAC":49579, "GCGAG":45667, "GCGTA":18335, "GCGTT":34955, "GCGTC":39696, "GCGTG":38562, "GCGCA":45403, "GCGCT":44749, "GCGCC":73969, "GCGCG":57807, "GCGGA":58431, "GCGGT":65704, "GCGGC":104608, "GCGGG":75643, "GGAAA":60706, "GGAAT":46578, "GGAAC":58974, "GGAAG":68890, "GGATA":34721, "GGATT":54717, "GGATC":52351, "GGATG":61257, "GGACA":39869, "GGACT":37851, "GGACC":39892, "GGACG":47468, "GGAGA":81228, "GGAGT":38612, "GGAGC":58310, "GGAGG":107593, "GGTAA":27802, "GGTAT":29248, "GGTAC":28635, "GGTAG":34669, "GGTTA":21290, "GGTTT":62988, "GGTTC":53812, "GGTTG":75770, "GGTCA":46524, "GGTCT":47683, "GGTCC":39399, "GGTCG":59057, "GGTGA":67380, "GGTGT":48471, "GGTGC":63830, "GGTGG":110984, "GGCAA":59251, "GGCAT":50418, "GGCAC":44839, "GGCAG":70837, "GGCTA":29235, "GGCTT":62438, "GGCTC":51663, "GGCTG":82109, "GGCCA":67914, "GGCCT":60721, "GGCCC":57454, "GGCCG":86726, "GGCGA":84402, "GGCGT":49338, "GGCGC":72281, "GGCGG":123407, "GGGAA":49845, "GGGAT":50383, "GGGAC":39142, "GGGAG":60384, "GGGTA":26655, "GGGTT":62547, "GGGTC":45879, "GGGTG":67957, "GGGCA":59194, "GGGCT":56450, "GGGCC":54911, "GGGCG":76047, "GGGGA":57227, "GGGGT":58151, "GGGGC":61327, "GGGGG":52453 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-34B_S42_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-34B_S42_R2_001.fastq.gz -o AM-AL-34B.trim.R1.fastq.gz -O AM-AL-34B.trim.R2.fastq.gz -m --merged_out AM-AL-34B.trim.merged.fastq.gz " }