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"CGGAC":32900, "CGGAG":61859, "CGGTA":34999, "CGGTT":44715, "CGGTC":50195, "CGGTG":68913, "CGGCA":73750, "CGGCT":65610, "CGGCC":80998, "CGGCG":102225, "CGGGA":51246, "CGGGT":47292, "CGGGC":59943, "CGGGG":55828, "GAAAA":61578, "GAAAT":43784, "GAAAC":43267, "GAAAG":54777, "GAATA":28850, "GAATT":36895, "GAATC":41199, "GAATG":32294, "GAACA":49669, "GAACT":160283, "GAACC":51809, "GAACG":39570, "GAAGA":552129, "GAAGT":37791, "GAAGC":61077, "GAAGG":63790, "GATAA":29177, "GATAT":28243, "GATAC":22636, "GATAG":37966, "GATTA":23211, "GATTT":50819, "GATTC":44184, "GATTG":38144, "GATCA":55066, "GATCT":54221, "GATCC":51928, "GATCG":604116, "GATGA":69049, "GATGT":37892, "GATGC":45735, "GATGG":60851, "GACAA":40130, "GACAT":29709, "GACAC":26927, "GACAG":40368, "GACTA":16592, "GACTT":40050, "GACTC":24369, "GACTG":29129, "GACCA":57502, "GACCT":40063, "GACCC":49722, "GACCG":51330, "GACGA":58221, "GACGT":27085, "GACGC":40798, "GACGG":46890, "GAGAA":57943, "GAGAT":178846, "GAGAC":38104, "GAGAG":45672, "GAGTA":17985, "GAGTT":33179, "GAGTC":20916, "GAGTG":22662, "GAGCA":428204, "GAGCT":32971, "GAGCC":45916, "GAGCG":40220, "GAGGA":91228, "GAGGT":43354, "GAGGC":54567, "GAGGG":50708, "GTAAA":20046, "GTAAT":19973, "GTAAC":18795, "GTAAG":18998, "GTATA":11961, "GTATT":23229, "GTATC":21642, "GTATG":18954, "GTACA":22399, "GTACT":18656, "GTACC":25240, "GTACG":19839, "GTAGA":75456, "GTAGT":20188, "GTAGC":27344, "GTAGG":23432, "GTTAA":13401, "GTTAT":17943, "GTTAC":22741, "GTTAG":25303, "GTTTA":22354, "GTTTT":51208, "GTTTC":46151, "GTTTG":48711, "GTTCA":40686, "GTTCT":42413, "GTTCC":60276, "GTTCG":42025, "GTTGA":47328, "GTTGT":49094, "GTTGC":44370, "GTTGG":70187, "GTCAA":33111, "GTCAT":32217, "GTCAC":61612, "GTCAG":39174, "GTCTA":19337, "GTCTT":37764, "GTCTC":40004, "GTCTG":227205, "GTCCA":45461, "GTCCT":43064, "GTCCC":40059, "GTCCG":32953, "GTCGA":51003, "GTCGT":40525, "GTCGC":44490, "GTCGG":48456, "GTGAA":44713, "GTGAT":39955, "GTGAC":27067, "GTGAG":37392, "GTGTA":15835, "GTGTT":38968, "GTGTC":23976, "GTGTG":35533, "GTGCA":29915, "GTGCT":41122, "GTGCC":41088, "GTGCG":35675, "GTGGA":53590, "GTGGT":71043, "GTGGC":56203, "GTGGG":63658, "GCAAA":40620, "GCAAT":31044, "GCAAC":42528, "GCAAG":50865, "GCATA":23228, "GCATT":33015, "GCATC":44110, "GCATG":33971, "GCACA":360681, "GCACT":21724, "GCACC":68362, "GCACG":34375, "GCAGA":100495, "GCAGT":31108, "GCAGC":72013, "GCAGG":91477, "GCTAA":15131, "GCTAT":20060, "GCTAC":30770, "GCTAG":27135, "GCTTA":20833, "GCTTT":44726, "GCTTC":69766, "GCTTG":49940, "GCTCA":40728, "GCTCT":38162, "GCTCC":59798, "GCTCG":53292, "GCTGA":52423, "GCTGT":41866, "GCTGC":75490, "GCTGG":94540, "GCCAA":61678, "GCCAT":47003, "GCCAC":60779, "GCCAG":86384, "GCCTA":23655, "GCCTT":51237, "GCCTC":61188, "GCCTG":73420, "GCCCA":73232, "GCCCT":56885, "GCCCC":66911, "GCCCG":64986, "GCCGA":83791, "GCCGT":55697, "GCCGC":100663, "GCCGG":89687, "GCGAA":46750, "GCGAT":47794, "GCGAC":44859, "GCGAG":50922, "GCGTA":19649, "GCGTT":32859, "GCGTC":36991, "GCGTG":36171, "GCGCA":46243, "GCGCT":42520, "GCGCC":68890, "GCGCG":53079, "GCGGA":56422, "GCGGT":60763, "GCGGC":91390, "GCGGG":69660, "GGAAA":55797, "GGAAT":41083, "GGAAC":52538, "GGAAG":536196, "GGATA":34515, "GGATT":47747, "GGATC":47019, "GGATG":54774, "GGACA":39535, "GGACT":32682, "GGACC":37185, "GGACG":42991, "GGAGA":119567, "GGAGT":31166, "GGAGC":51271, "GGAGG":97526, "GGTAA":23879, "GGTAT":24976, "GGTAC":25894, "GGTAG":51156, "GGTTA":23948, "GGTTT":59191, "GGTTC":48394, "GGTTG":76399, "GGTCA":45704, "GGTCT":45972, "GGTCC":37091, "GGTCG":55414, "GGTGA":64892, "GGTGT":50361, "GGTGC":60077, "GGTGG":111948, "GGCAA":55221, "GGCAT":43670, "GGCAC":40173, "GGCAG":85093, "GGCTA":30261, "GGCTT":57834, "GGCTC":46157, "GGCTG":78907, "GGCCA":68099, "GGCCT":55717, "GGCCC":53453, "GGCCG":79382, "GGCGA":80703, "GGCGT":45892, "GGCGC":66797, "GGCGG":109430, "GGGAA":47587, "GGGAT":45853, "GGGAC":34732, "GGGAG":67426, "GGGTA":27660, "GGGTT":60644, "GGGTC":43396, "GGGTG":68304, "GGGCA":57761, "GGGCT":53045, "GGGCC":50790, "GGGCG":68308, "GGGGA":56034, "GGGGT":58021, "GGGGC":55724, "GGGGG":133985 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 929904, "total_bases": 56724144, "q20_bases": 55153878, "q30_bases": 52417028, "total_cycles": 61, "quality_curves": { "A":[39.4628,39.3205,39.1993,38.8852,38.9078,39.194,39.2276,39.1589,39.1843,39.1917,39.1634,39.1704,39.1962,39.1776,39.0855,39.0918,39.1561,39.1305,39.2147,39.1175,38.4073,39.1071,39.1573,39.1614,38.6299,39.0729,39.1196,38.441,38.9768,38.0555,39.0562,39.165,39.0608,39.1004,38.8785,38.5428,38.8234,39.0538,38.5171,38.8181,38.9026,38.2058,38.843,38.7019,38.6967,38.821,38.8156,38.0332,38.4835,37.7691,37.5456,37.1946,37.9383,37.6775,37.2891,35.8835,35.5827,34.9794,34.5069,34.6751,33.7891], 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"CTTGT":42305, "CTTGC":41594, "CTTGG":51831, "CTCAA":38708, "CTCAT":31158, "CTCAC":34116, "CTCAG":29462, "CTCTA":20123, "CTCTT":44920, "CTCTC":42811, "CTCTG":36258, "CTCCA":64685, "CTCCT":97241, "CTCCC":68092, "CTCCG":52627, "CTCGA":44192, "CTCGT":37330, "CTCGC":42892, "CTCGG":49660, "CTGAA":38041, "CTGAT":39640, "CTGAC":30410, "CTGAG":28751, "CTGTA":17137, "CTGTT":47967, "CTGTC":29839, "CTGTG":31008, "CTGCA":46045, "CTGCT":89075, "CTGCC":71743, "CTGCG":44885, "CTGGA":57958, "CTGGT":63388, "CTGGC":63420, "CTGGG":62401, "CCAAA":61803, "CCAAT":37821, "CCAAC":73733, "CCAAG":49808, "CCATA":24856, "CCATT":36718, "CCATC":61771, "CCATG":43182, "CCACA":56909, "CCACT":30859, "CCACC":124888, "CCACG":47155, "CCAGA":51627, "CCAGT":43779, "CCAGC":91815, "CCAGG":66981, "CCTAA":15886, "CCTAT":19459, "CCTAC":26419, "CCTAG":11295, "CCTTA":14877, "CCTTT":49444, "CCTTC":74351, "CCTTG":59472, "CCTCA":48476, "CCTCT":45745, "CCTCC":112727, "CCTCG":57659, "CCTGA":44906, "CCTGT":47238, "CCTGC":103411, "CCTGG":69917, "CCCAA":69087, "CCCAT":42902, "CCCAC":76561, "CCCAG":68504, "CCCTA":21932, "CCCTT":47139, "CCCTC":63013, "CCCTG":57855, "CCCCA":79245, "CCCCT":54551, "CCCCC":65925, "CCCCG":61711, "CCCGA":49061, "CCCGT":37083, "CCCGC":76118, "CCCGG":61156, "CCGAA":48627, "CCGAT":47613, "CCGAC":51325, "CCGAG":50939, "CCGTA":23980, "CCGTT":36883, "CCGTC":48509, "CCGTG":37168, "CCGCA":53191, "CCGCT":52528, "CCGCC":114875, "CCGCG":60552, "CCGGA":52199, "CCGGT":55157, "CCGGC":84502, "CCGGG":57159, "CGAAA":39323, "CGAAT":31129, "CGAAC":39894, "CGAAG":48559, "CGATA":25625, "CGATT":34123, "CGATC":55223, "CGATG":55069, "CGACA":35049, "CGACT":32327, "CGACC":57925, "CGACG":55919, "CGAGA":40981, "CGAGT":22972, "CGAGC":46744, "CGAGG":50969, "CGTAA":19037, "CGTAT":15970, "CGTAC":17335, "CGTAG":21530, "CGTTA":12589, "CGTTT":29033, "CGTTC":38608, "CGTTG":37075, "CGTCA":32198, "CGTCT":31413, "CGTCC":44255, "CGTCG":52173, "CGTGA":31964, "CGTGT":19668, "CGTGC":29329, "CGTGG":42548, "CGCAA":32259, "CGCAT":26151, "CGCAC":38442, "CGCAG":41081, "CGCTA":14886, "CGCTT":35753, "CGCTC":42942, "CGCTG":51182, "CGCCA":65097, "CGCCT":62332, "CGCCC":73446, "CGCCG":97468, "CGCGA":38825, "CGCGT":27088, "CGCGC":48833, "CGCGG":57760, "CGGAA":42604, "CGGAT":38225, "CGGAC":29513, "CGGAG":44079, "CGGTA":27009, "CGGTT":41683, "CGGTC":45724, "CGGTG":62823, "CGGCA":60144, "CGGCT":60736, "CGGCC":73506, "CGGCG":90981, "CGGGA":43724, "CGGGT":43164, "CGGGC":54172, "CGGGG":50934, "GAAAA":54389, "GAAAT":41003, "GAAAC":40349, "GAAAG":40800, "GAATA":25081, "GAATT":34859, "GAATC":38791, "GAATG":30221, "GAACA":41944, "GAACT":36959, "GAACC":47689, "GAACG":35881, "GAAGA":63969, "GAAGT":34336, "GAAGC":55644, "GAAGG":58271, "GATAA":25869, "GATAT":26443, "GATAC":20978, "GATAG":21939, "GATTA":19640, "GATTT":48428, "GATTC":41257, "GATTG":35371, "GATCA":47160, "GATCT":50469, "GATCC":47751, "GATCG":50272, "GATGA":61559, "GATGT":35284, "GATGC":41789, "GATGG":56217, "GACAA":35400, "GACAT":27189, "GACAC":24526, "GACAG":26182, "GACTA":13423, "GACTT":37682, "GACTC":22365, "GACTG":26414, "GACCA":49107, "GACCT":36694, "GACCC":45757, "GACCG":46279, "GACGA":50910, "GACGT":24643, "GACGC":36607, "GACGG":43288, "GAGAA":51398, "GAGAT":46232, "GAGAC":35331, "GAGAG":33850, "GAGTA":14621, "GAGTT":30752, "GAGTC":19517, "GAGTG":21091, "GAGCA":48578, "GAGCT":30248, "GAGCC":41970, "GAGCG":35661, "GAGGA":80546, "GAGGT":39462, "GAGGC":50253, "GAGGG":46554, "GTAAA":18182, "GTAAT":18772, "GTAAC":17273, "GTAAG":12403, "GTATA":10035, "GTATT":22009, "GTATC":20035, "GTATG":17922, "GTACA":19433, "GTACT":17356, "GTACC":23341, "GTACG":18028, "GTAGA":24157, "GTAGT":18973, "GTAGC":25099, "GTAGG":21162, "GTTAA":11886, "GTTAT":16958, "GTTAC":21418, "GTTAG":12222, "GTTTA":18487, "GTTTT":48118, "GTTTC":42968, "GTTTG":45867, "GTTCA":35482, "GTTCT":39357, "GTTCC":55983, "GTTCG":38378, "GTTGA":42082, "GTTGT":46299, "GTTGC":41083, "GTTGG":65895, "GTCAA":28717, "GTCAT":29866, "GTCAC":27091, "GTCAG":26366, "GTCTA":15266, "GTCTT":35086, "GTCTC":38499, "GTCTG":31433, "GTCCA":39414, "GTCCT":40010, "GTCCC":37699, "GTCCG":30106, "GTCGA":43677, "GTCGT":36854, "GTCGC":40063, "GTCGG":43977, "GTGAA":38921, "GTGAT":36330, "GTGAC":24546, "GTGAG":27625, "GTGTA":12657, "GTGTT":36361, "GTGTC":22079, "GTGTG":32859, "GTGCA":24843, "GTGCT":37604, "GTGCC":37670, "GTGCG":31943, "GTGGA":46433, "GTGGT":66148, "GTGGC":52021, "GTGGG":58321, "GCAAA":34448, "GCAAT":28695, "GCAAC":38932, "GCAAG":35553, "GCATA":18695, "GCATT":31014, "GCATC":39901, "GCATG":30854, "GCACA":28847, "GCACT":19878, "GCACC":62278, "GCACG":30290, "GCAGA":39918, "GCAGT":28780, "GCAGC":65043, "GCAGG":82347, "GCTAA":12102, "GCTAT":18267, "GCTAC":28280, "GCTAG":12573, "GCTTA":15588, "GCTTT":41970, "GCTTC":65076, "GCTTG":46316, "GCTCA":34611, "GCTCT":35387, "GCTCC":56002, "GCTCG":48114, "GCTGA":44690, "GCTGT":38266, "GCTGC":68923, "GCTGG":86096, "GCCAA":52362, "GCCAT":43237, "GCCAC":55386, "GCCAG":60183, "GCCTA":17421, "GCCTT":47685, "GCCTC":57390, "GCCTG":67007, "GCCCA":61681, "GCCCT":52999, "GCCCC":61489, "GCCCG":58111, "GCCGA":71430, "GCCGT":50843, "GCCGC":89756, "GCCGG":80369, "GCGAA":38458, "GCGAT":43422, "GCGAC":40191, "GCGAG":36815, "GCGTA":14841, "GCGTT":30028, "GCGTC":33004, "GCGTG":32309, "GCGCA":36651, "GCGCT":37189, "GCGCC":61414, "GCGCG":45905, "GCGGA":46640, "GCGGT":55974, "GCGGC":82158, "GCGGG":62896, "GGAAA":47288, "GGAAT":38615, "GGAAC":48422, "GGAAG":55178, "GGATA":28053, "GGATT":44843, "GGATC":43401, "GGATG":50486, "GGACA":33048, "GGACT":30444, "GGACC":33985, "GGACG":38618, "GGAGA":64810, "GGAGT":28930, "GGAGC":46664, "GGAGG":88955, "GGTAA":20289, "GGTAT":23580, "GGTAC":23688, "GGTAG":28632, "GGTTA":18133, "GGTTT":55569, "GGTTC":45092, "GGTTG":71718, "GGTCA":38071, "GGTCT":42662, "GGTCC":34152, "GGTCG":50091, "GGTGA":55500, "GGTGT":46948, "GGTGC":54510, "GGTGG":103232, "GGCAA":46625, "GGCAT":40308, "GGCAC":36566, "GGCAG":59118, "GGCTA":23706, "GGCTT":53943, "GGCTC":42779, "GGCTG":72583, "GGCCA":56494, "GGCCT":51383, "GGCCC":48746, "GGCCG":70902, "GGCGA":68778, "GGCGT":41652, "GGCGC":58253, "GGCGG":99448, "GGGAA":40599, "GGGAT":42709, "GGGAC":31918, "GGGAG":49967, "GGGTA":21075, "GGGTT":56984, "GGGTC":40044, "GGGTG":62251, "GGGCA":47967, "GGGCT":49224, "GGGCC":46236, "GGGCG":61042, "GGGGA":47919, "GGGGT":53317, "GGGGC":50856, "GGGGG":46947 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-33C_S40_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-33C_S40_R2_001.fastq.gz -o AM-AL-33C.trim.R1.fastq.gz -O AM-AL-33C.trim.R2.fastq.gz -m --merged_out AM-AL-33C.trim.merged.fastq.gz " }