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"TTCTT":125080, "TTCTC":107065, "TTCTG":80968, "TTCCA":92511, "TTCCT":139976, "TTCCC":94580, "TTCCG":75437, "TTCGA":62226, "TTCGT":59709, "TTCGC":65447, "TTCGG":71004, "TTGAA":76564, "TTGAT":74571, "TTGAC":53207, "TTGAG":78556, "TTGTA":43884, "TTGTT":92898, "TTGTC":65197, "TTGTG":69079, "TTGCA":49725, "TTGCT":79782, "TTGCC":87732, "TTGCG":55523, "TTGGA":79943, "TTGGT":100319, "TTGGC":90138, "TTGGG":98411, "TCAAA":69584, "TCAAT":53921, "TCAAC":70379, "TCAAG":75947, "TCATA":35502, "TCATT":54763, "TCATC":95150, "TCATG":54497, "TCACA":110301, "TCACT":35464, "TCACC":98827, "TCACG":52683, "TCAGA":106917, "TCAGT":36149, "TCAGC":71296, "TCAGG":65041, "TCTAA":28717, "TCTAT":35227, "TCTAC":47372, "TCTAG":31489, "TCTTA":30454, "TCTTT":99066, "TCTTC":135872, "TCTTG":77099, "TCTCA":50646, "TCTCT":77702, "TCTCC":130076, "TCTCG":62513, "TCTGA":378309, "TCTGT":43594, "TCTGC":76440, "TCTGG":89254, "TCCAA":77885, "TCCAT":74280, "TCCAC":85885, "TCCAG":264820, "TCCTA":36282, "TCCTT":112900, 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"CTCCG":75141, "CTCGA":70542, "CTCGT":60513, "CTCGC":66438, "CTCGG":71729, "CTGAA":371745, "CTGAT":59543, "CTGAC":46150, "CTGAG":62067, "CTGTA":33229, "CTGTT":78013, "CTGTC":48372, "CTGTG":50976, "CTGCA":81514, "CTGCT":170068, "CTGCC":108898, "CTGCG":69831, "CTGGA":97540, "CTGGT":95166, "CTGGC":95370, "CTGGG":104676, "CCAAA":109409, "CCAAT":75462, "CCAAC":112708, "CCAAG":105080, "CCATA":47594, "CCATT":60985, "CCATC":99031, "CCATG":68577, "CCACA":99534, "CCACT":52183, "CCACC":201288, "CCACG":71487, "CCAGA":176585, "CCAGT":193597, "CCAGC":137535, "CCAGG":101580, "CCTAA":31730, "CCTAT":31964, "CCTAC":44409, "CCTAG":42644, "CCTTA":34619, "CCTTT":88634, "CCTTC":136576, "CCTTG":92970, "CCTCA":87534, "CCTCT":90725, "CCTCC":303553, "CCTCG":92814, "CCTGA":71230, "CCTGT":70778, "CCTGC":157300, "CCTGG":101889, "CCCAA":110868, "CCCAT":70099, "CCCAC":124560, "CCCAG":123373, "CCCTA":43315, "CCCTT":86112, "CCCTC":169777, "CCCTG":85559, "CCCCA":131763, "CCCCT":107028, "CCCCC":135370, "CCCCG":85556, "CCCGA":69929, "CCCGT":53191, "CCCGC":105896, "CCCGG":81244, "CCGAA":74563, "CCGAT":67291, "CCGAC":74311, "CCGAG":88859, "CCGTA":42031, "CCGTT":52746, "CCGTC":76925, "CCGTG":55406, "CCGCA":84115, "CCGCT":76939, "CCGCC":162860, "CCGCG":86226, "CCGGA":77233, "CCGGT":72027, "CCGGC":118200, "CCGGG":80272, "CGAAA":69448, "CGAAT":45912, "CGAAC":55948, "CGAAG":96213, "CGATA":46031, "CGATT":54210, "CGATC":72319, "CGATG":85968, "CGACA":63663, "CGACT":46532, "CGACC":86429, "CGACG":87893, "CGAGA":112256, "CGAGT":37681, "CGAGC":69192, "CGAGG":91421, "CGTAA":34383, "CGTAT":25125, "CGTAC":27357, "CGTAG":51727, "CGTTA":26158, "CGTTT":49368, "CGTTC":56170, "CGTTG":59633, "CGTCA":57503, "CGTCT":452792, "CGTCC":71616, "CGTCG":84846, "CGTGA":52890, "CGTGT":33794, "CGTGC":48303, "CGTGG":67972, "CGCAA":56805, "CGCAT":42605, "CGCAC":57287, "CGCAG":85366, "CGCTA":27929, "CGCTT":59774, "CGCTC":62029, "CGCTG":84538, "CGCCA":106187, "CGCCT":92784, "CGCCC":109454, "CGCCG":142208, "CGCGA":60354, "CGCGT":41884, "CGCGC":79032, "CGCGG":85366, "CGGAA":877349, "CGGAT":56005, "CGGAC":44925, "CGGAG":89839, "CGGTA":44247, "CGGTT":58402, "CGGTC":65478, "CGGTG":95350, "CGGCA":102395, "CGGCT":86408, "CGGCC":103866, "CGGCG":140359, "CGGGA":71406, "CGGGT":63004, "CGGGC":77499, "CGGGG":79976, "GAAAA":110760, "GAAAT":73425, "GAAAC":67226, "GAAAG":96034, "GAATA":46555, "GAATT":58214, "GAATC":57484, "GAATG":53877, "GAACA":71479, "GAACT":303690, "GAACC":66433, "GAACG":55042, "GAAGA":934699, "GAAGT":60447, "GAAGC":98500, "GAAGG":122513, "GATAA":51752, "GATAT":45614, "GATAC":34133, "GATAG":57981, "GATTA":40140, "GATTT":78739, "GATTC":61008, "GATTG":60781, "GATCA":73899, "GATCT":65277, "GATCC":61957, "GATCG":963721, "GATGA":108019, "GATGT":58471, "GATGC":68631, "GATGG":97723, "GACAA":66165, "GACAT":47400, "GACAC":39756, "GACAG":67533, "GACTA":26010, "GACTT":54499, "GACTC":34575, "GACTG":43114, "GACCA":82073, "GACCT":58680, "GACCC":66486, "GACCG":67704, "GACGA":92922, "GACGT":40776, "GACGC":59014, "GACGG":70805, "GAGAA":106823, "GAGAT":307968, "GAGAC":63652, "GAGAG":97647, "GAGTA":31069, "GAGTT":52143, "GAGTC":32628, "GAGTG":39164, "GAGCA":735232, "GAGCT":51333, "GAGCC":63107, "GAGCG":59020, "GAGGA":229332, "GAGGT":71444, "GAGGC":85643, "GAGGG":131605, "GTAAA":35531, "GTAAT":31127, "GTAAC":29542, "GTAAG":34176, "GTATA":19874, "GTATT":36768, "GTATC":31061, "GTATG":32363, "GTACA":34405, "GTACT":27141, "GTACC":33823, "GTACG":28111, "GTAGA":110528, "GTAGT":33881, "GTAGC":44245, "GTAGG":40362, "GTTAA":24390, "GTTAT":29845, "GTTAC":32166, "GTTAG":40575, "GTTTA":38985, "GTTTT":87328, "GTTTC":69119, "GTTTG":79752, "GTTCA":57727, "GTTCT":62191, "GTTCC":78380, "GTTCG":56526, "GTTGA":75562, "GTTGT":79344, "GTTGC":68757, "GTTGG":107916, "GTCAA":51701, "GTCAT":47202, "GTCAC":120612, "GTCAG":62459, "GTCTA":30548, "GTCTT":59277, "GTCTC":60622, "GTCTG":416617, "GTCCA":67624, "GTCCT":66593, "GTCCC":54651, "GTCCG":44486, "GTCGA":71674, "GTCGT":61747, "GTCGC":62904, "GTCGG":67850, "GTGAA":69125, "GTGAT":60088, "GTGAC":40340, "GTGAG":67978, "GTGTA":26815, "GTGTT":59904, "GTGTC":35833, "GTGTG":62417, "GTGCA":48173, "GTGCT":62992, "GTGCC":58019, "GTGCG":51680, "GTGGA":86976, "GTGGT":116993, "GTGGC":81301, "GTGGG":104561, "GCAAA":69390, "GCAAT":50430, "GCAAC":65228, "GCAAG":85866, "GCATA":35793, "GCATT":51356, "GCATC":64618, "GCATG":53702, "GCACA":626681, "GCACT":33168, "GCACC":93370, "GCACG":49779, "GCAGA":161941, "GCAGT":49827, "GCAGC":134951, "GCAGG":145409, "GCTAA":25435, "GCTAT":32112, "GCTAC":45813, "GCTAG":43271, "GCTTA":35647, "GCTTT":74366, "GCTTC":101659, "GCTTG":83436, "GCTCA":59040, "GCTCT":54671, "GCTCC":90511, "GCTCG":70022, "GCTGA":78642, "GCTGT":67147, "GCTGC":137125, "GCTGG":135345, "GCCAA":109293, "GCCAT":66235, "GCCAC":84198, "GCCAG":124291, "GCCTA":35055, "GCCTT":75108, "GCCTC":87413, "GCCTG":96876, "GCCCA":97684, "GCCCT":82163, "GCCCC":87791, "GCCCG":81222, "GCCGA":109468, "GCCGT":77765, "GCCGC":133334, "GCCGG":115090, "GCGAA":66705, "GCGAT":65097, "GCGAC":66009, "GCGAG":78615, "GCGTA":29167, "GCGTT":48915, "GCGTC":56105, "GCGTG":55779, "GCGCA":68426, "GCGCT":60620, "GCGCC":96590, "GCGCG":77332, "GCGGA":81492, "GCGGT":82809, "GCGGC":127235, "GCGGG":97455, "GGAAA":100332, "GGAAT":67199, "GGAAC":72157, "GGAAG":911933, "GGATA":54685, "GGATT":73117, "GGATC":59302, "GGATG":88733, "GGACA":64684, "GGACT":44120, "GGACC":53791, "GGACG":69244, "GGAGA":225814, "GGAGT":50959, "GGAGC":88031, "GGAGG":261080, "GGTAA":38939, "GGTAT":37654, "GGTAC":35655, "GGTAG":75541, "GGTTA":37645, "GGTTT":93118, "GGTTC":65311, "GGTTG":114851, "GGTCA":65874, "GGTCT":64116, "GGTCC":51848, "GGTCG":76660, "GGTGA":102182, "GGTGT":76106, "GGTGC":87430, "GGTGG":178166, "GGCAA":86564, "GGCAT":65299, "GGCAC":57422, "GGCAG":131201, "GGCTA":44298, "GGCTT":87763, "GGCTC":63300, "GGCTG":109151, "GGCCA":94485, "GGCCT":71997, "GGCCC":65617, "GGCCG":102992, "GGCGA":117292, "GGCGT":68842, "GGCGC":95383, "GGCGG":151457, "GGGAA":84838, "GGGAT":70657, "GGGAC":53715, "GGGAG":162021, 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"GGGTA":44538, "GGGTT":100386, "GGGTC":67503, "GGGTG":128822, "GGGCA":99753, "GGGCT":74700, "GGGCC":66452, "GGGCG":109321, "GGGGA":153892, "GGGGT":105092, "GGGGC":88222, "GGGGG":201527 }, "overrepresented_sequences": { } }, "merged_and_filtered": { "total_reads": 1235682, "total_bases": 65507060, "q20_bases": 65134509, "q30_bases": 63223958, "total_cycles": 91, "quality_curves": { 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"T":[39.6402,39.5718,39.569,39.5966,39.6767,39.6228,39.6533,39.6573,39.6762,39.7127,39.6896,39.6991,39.7354,39.6913,39.7146,39.7579,39.7258,39.7844,39.7745,39.744,39.7624,39.7878,39.7738,39.7626,39.7723,39.7596,39.7771,39.7826,39.7726,39.7624,39.7534,39.7567,39.7404,39.7403,39.7406,39.7274,39.7362,39.7018,39.6946,39.7227,39.7159,39.672,39.7076,39.6736,39.6121,39.5038,39.7271,39.6982,39.5476,39.6407,39.5495,39.5396,39.5503,39.6443,39.6455,39.529,39.5607,39.4082,39.071,39.2545,38.9392,39.2864,39.3116,39.2957,39.3163,39.3086,39.2747,39.3338,39.2661,39.2953,39.2709,39.2686,39.2809,39.2755,39.3178,39.2982,39.316,39.2647,39.3035,39.2596,39.2724,39.2969,39.2401,39.3527,39.2384,39.2667,39.2558,39.3927,39.4072,39.2949,39.4895], 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"CTTGA":65543, "CTTGT":66216, "CTTGC":67927, "CTTGG":79072, "CTCAA":60198, "CTCAT":50386, "CTCAC":52138, "CTCAG":44127, "CTCTA":31008, "CTCTT":79010, "CTCTC":75119, "CTCTG":54174, "CTCCA":96776, "CTCCT":219179, "CTCCC":155661, "CTCCG":70001, "CTCGA":62691, "CTCGT":56359, "CTCGC":61306, "CTCGG":66093, "CTGAA":58302, "CTGAT":55261, "CTGAC":42705, "CTGAG":44818, "CTGTA":27284, "CTGTT":72892, "CTGTC":44917, "CTGTG":47456, "CTGCA":69698, "CTGCT":160497, "CTGCC":101305, "CTGCG":64390, "CTGGA":85538, "CTGGT":88913, "CTGGC":87595, "CTGGG":85614, "CCAAA":98161, "CCAAT":55751, "CCAAC":104620, "CCAAG":79521, "CCATA":39308, "CCATT":57621, "CCATC":91474, "CCATG":63358, "CCACA":86306, "CCACT":48446, "CCACC":186102, "CCACG":65115, "CCAGA":70737, "CCAGT":59246, "CCAGC":125664, "CCAGG":92717, "CCTAA":27016, "CCTAT":29876, "CCTAC":41097, "CCTAG":18306, "CCTTA":25579, "CCTTT":83930, "CCTTC":126746, "CCTTG":87267, "CCTCA":74141, "CCTCT":84648, "CCTCC":278454, "CCTCG":86230, "CCTGA":61695, "CCTGT":66003, "CCTGC":146510, "CCTGG":94238, "CCCAA":97720, "CCCAT":65076, "CCCAC":114055, "CCCAG":88172, "CCCTA":33909, "CCCTT":79930, "CCCTC":152765, "CCCTG":79307, "CCCCA":112376, "CCCCT":97834, "CCCCC":112693, "CCCCG":78132, "CCCGA":59976, "CCCGT":48056, "CCCGC":96397, "CCCGG":74677, "CCGAA":63135, "CCGAT":61381, "CCGAC":67391, "CCGAG":68739, "CCGTA":34618, "CCGTT":49230, "CCGTC":69518, "CCGTG":51336, "CCGCA":70270, "CCGCT":70754, "CCGCC":148085, "CCGCG":78665, "CCGGA":66910, "CCGGT":66290, "CCGGC":107164, "CCGGG":73115, "CGAAA":59421, "CGAAT":42726, "CGAAC":49669, "CGAAG":73656, "CGATA":37974, "CGATT":50569, "CGATC":64550, "CGATG":79383, "CGACA":52739, "CGACT":43061, "CGACC":78792, "CGACG":80938, "CGAGA":60375, "CGAGT":34913, "CGAGC":62570, "CGAGG":83418, "CGTAA":29712, "CGTAT":23407, "CGTAC":25650, "CGTAG":34443, "CGTTA":20876, "CGTTT":46028, "CGTTC":51795, "CGTTG":55502, "CGTCA":47824, "CGTCT":47485, "CGTCC":66060, "CGTCG":76768, "CGTGA":45788, "CGTGT":30765, "CGTGC":44276, "CGTGG":62826, "CGCAA":49265, "CGCAT":39093, "CGCAC":51196, "CGCAG":60381, "CGCTA":22034, "CGCTT":54877, "CGCTC":56752, "CGCTG":76782, "CGCCA":88951, "CGCCT":85656, "CGCCC":99369, "CGCCG":128593, "CGCGA":52411, "CGCGT":38267, "CGCGC":70589, "CGCGG":77846, "CGGAA":62786, "CGGAT":51766, "CGGAC":40718, "CGGAG":67674, "CGGTA":35249, "CGGTT":54872, "CGGTC":60493, "CGGTG":87072, "CGGCA":85204, "CGGCT":80135, "CGGCC":94437, "CGGCG":126451, "CGGGA":61228, "CGGGT":58072, "CGGGC":70866, "CGGGG":72675, "GAAAA":98444, "GAAAT":68831, "GAAAC":62486, "GAAAG":75080, "GAATA":40753, "GAATT":54835, "GAATC":54044, "GAATG":50616, "GAACA":59456, "GAACT":50718, "GAACC":60687, "GAACG":50662, "GAAGA":120388, "GAAGT":56049, "GAAGC":90946, "GAAGG":113370, "GATAA":46135, "GATAT":43095, "GATAC":31637, "GATAG":36382, "GATTA":34296, "GATTT":74375, "GATTC":57202, "GATTG":56503, "GATCA":61807, "GATCT":60705, "GATCC":56772, "GATCG":61275, "GATGA":95381, "GATGT":54521, "GATGC":63599, "GATGG":91005, "GACAA":58662, "GACAT":43708, "GACAC":36567, "GACAG":43185, "GACTA":21156, "GACTT":51423, "GACTC":31500, "GACTG":39505, "GACCA":69612, "GACCT":54522, "GACCC":61205, "GACCG":61476, "GACGA":81967, "GACGT":37499, "GACGC":53999, "GACGG":66004, "GAGAA":95094, "GAGAT":69823, "GAGAC":59071, "GAGAG":70755, "GAGTA":25973, "GAGTT":48618, "GAGTC":30402, "GAGTG":36677, "GAGCA":81222, "GAGCT":47418, "GAGCC":57838, "GAGCG":52972, "GAGGA":199536, "GAGGT":65447, "GAGGC":79004, "GAGGG":119312, "GTAAA":32417, "GTAAT":29553, "GTAAC":27115, "GTAAG":24274, "GTATA":16791, "GTATT":34794, "GTATC":29048, "GTATG":30467, "GTACA":29440, "GTACT":25594, "GTACC":31647, "GTACG":25952, "GTAGA":39768, "GTAGT":32089, "GTAGC":41417, "GTAGG":37265, "GTTAA":21496, "GTTAT":28399, "GTTAC":30389, "GTTAG":21160, "GTTTA":32206, "GTTTT":81913, "GTTTC":64625, "GTTTG":75114, "GTTCA":50432, "GTTCT":58563, "GTTCC":72788, "GTTCG":51535, "GTTGA":66588, "GTTGT":74704, "GTTGC":64140, "GTTGG":101654, "GTCAA":45443, "GTCAT":44084, "GTCAC":38334, "GTCAG":39190, "GTCTA":23932, "GTCTT":55247, "GTCTC":58174, "GTCTG":44723, "GTCCA":58757, "GTCCT":62067, "GTCCC":51301, "GTCCG":40625, "GTCGA":61940, "GTCGT":56755, "GTCGC":57511, "GTCGG":61635, "GTGAA":60810, "GTGAT":54989, "GTGAC":37211, "GTGAG":48035, "GTGTA":21626, "GTGTT":56030, "GTGTC":33012, "GTGTG":57602, "GTGCA":40240, "GTGCT":58493, "GTGCC":53528, "GTGCG":47552, "GTGGA":74604, "GTGGT":108951, "GTGGC":75318, "GTGGG":95600, "GCAAA":60259, "GCAAT":47128, "GCAAC":60470, "GCAAG":64114, "GCATA":29380, "GCATT":48401, "GCATC":59625, "GCATG":49760, "GCACA":43910, "GCACT":30789, "GCACC":85247, "GCACG":44844, "GCAGA":62937, "GCAGT":46659, "GCAGC":125834, "GCAGG":132549, "GCTAA":21497, "GCTAT":29883, "GCTAC":42574, "GCTAG":22140, "GCTTA":28096, "GCTTT":69934, "GCTTC":95336, "GCTTG":78379, "GCTCA":50264, "GCTCT":50893, "GCTCC":85269, "GCTCG":63901, "GCTGA":67516, "GCTGT":62222, "GCTGC":128249, "GCTGG":124982, "GCCAA":79077, "GCCAT":61435, "GCCAC":77742, "GCCAG":85124, "GCCTA":26653, "GCCTT":70292, "GCCTC":81627, "GCCTG":88896, "GCCCA":82439, "GCCCT":76420, "GCCCC":80642, "GCCCG":73015, "GCCGA":94418, "GCCGT":71328, "GCCGC":120307, "GCCGG":104279, "GCGAA":56467, "GCGAT":59577, "GCGAC":60405, "GCGAG":58659, "GCGTA":23462, "GCGTT":45474, "GCGTC":51351, "GCGTG":50860, "GCGCA":55917, "GCGCT":54721, "GCGCC":87651, "GCGCG":69004, "GCGGA":68520, "GCGGT":76757, "GCGGC":115975, "GCGGG":88583, "GGAAA":86055, "GGAAT":63229, "GGAAC":66937, "GGAAG":110166, "GGATA":45548, "GGATT":68646, "GGATC":55142, "GGATG":82613, "GGACA":53201, "GGACT":40910, "GGACC":49823, "GGACG":63191, "GGAGA":120605, "GGAGT":47708, "GGAGC":81417, "GGAGG":236180, "GGTAA":33817, "GGTAT":35563, "GGTAC":33050, "GGTAG":46739, "GGTTA":29717, "GGTTT":87635, "GGTTC":61175, "GGTTG":107565, "GGTCA":53850, "GGTCT":59836, "GGTCC":47942, "GGTCG":69691, "GGTGA":85968, "GGTGT":70771, "GGTGC":80609, "GGTGG":164275, "GGCAA":74184, "GGCAT":60906, "GGCAC":52943, "GGCAG":91014, "GGCTA":35865, "GGCTT":82475, "GGCTC":59114, "GGCTG":101262, "GGCCA":77798, "GGCCT":66208, "GGCCC":60216, "GGCCG":92763, "GGCGA":100200, "GGCGT":63383, "GGCGC":85283, "GGCGG":137374, "GGGAA":72215, "GGGAT":65641, "GGGAC":49476, "GGGAG":123859, "GGGTA":33210, "GGGTT":88426, "GGGTC":55761, "GGGTG":98910, "GGGCA":74793, "GGGCT":68381, "GGGCC":58413, "GGGCG":90038, "GGGGA":93060, "GGGGT":82694, "GGGGC":74631, "GGGGG":87649 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-32C_S37_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-32C_S37_R2_001.fastq.gz -o AM-AL-32C.trim.R1.fastq.gz -O AM-AL-32C.trim.R2.fastq.gz -m --merged_out AM-AL-32C.trim.merged.fastq.gz " }