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"GAGAG":78396, "GAGTA":25364, "GAGTT":43075, "GAGTC":26624, "GAGTG":32414, "GAGCA":624573, "GAGCT":41055, "GAGCC":51306, "GAGCG":46648, "GAGGA":184228, "GAGGT":58141, "GAGGC":68322, "GAGGG":107687, "GTAAA":30761, "GTAAT":27362, "GTAAC":24956, "GTAAG":28659, "GTATA":17431, "GTATT":31516, "GTATC":25990, "GTATG":27458, "GTACA":28862, "GTACT":23815, "GTACC":28271, "GTACG":23274, "GTAGA":94152, "GTAGT":28488, "GTAGC":35810, "GTAGG":32951, "GTTAA":21171, "GTTAT":25669, "GTTAC":27065, "GTTAG":34726, "GTTTA":34542, "GTTTT":76341, "GTTTC":60216, "GTTTG":67593, "GTTCA":48104, "GTTCT":52277, "GTTCC":65594, "GTTCG":45994, "GTTGA":62309, "GTTGT":67810, "GTTGC":56006, "GTTGG":92703, "GTCAA":43126, "GTCAT":39278, "GTCAC":101901, "GTCAG":51674, "GTCTA":25406, "GTCTT":50120, "GTCTC":51049, "GTCTG":355246, "GTCCA":55506, "GTCCT":56054, "GTCCC":46045, "GTCCG":36145, "GTCGA":58184, "GTCGT":50900, "GTCGC":49073, "GTCGG":54769, "GTGAA":59060, "GTGAT":49945, "GTGAC":31752, "GTGAG":56574, "GTGTA":22675, "GTGTT":51655, "GTGTC":30126, "GTGTG":54517, "GTGCA":38501, "GTGCT":52882, "GTGCC":46987, "GTGCG":41810, "GTGGA":70996, "GTGGT":97382, "GTGGC":66761, "GTGGG":87560, "GCAAA":74363, "GCAAT":41773, "GCAAC":55524, "GCAAG":70993, "GCATA":30302, "GCATT":43487, "GCATC":52821, "GCATG":44482, "GCACA":536370, "GCACT":27415, "GCACC":78727, "GCACG":40096, "GCAGA":135329, "GCAGT":40598, "GCAGC":108374, "GCAGG":116084, "GCTAA":21898, "GCTAT":26707, "GCTAC":37958, "GCTAG":36768, "GCTTA":30073, "GCTTT":63787, "GCTTC":85567, "GCTTG":69343, "GCTCA":48463, "GCTCT":45669, "GCTCC":75852, "GCTCG":56529, "GCTGA":63889, "GCTGT":55645, "GCTGC":112271, "GCTGG":110737, "GCCAA":77149, "GCCAT":55037, "GCCAC":70815, "GCCAG":102584, "GCCTA":29419, "GCCTT":62446, "GCCTC":72280, "GCCTG":79245, "GCCCA":82113, "GCCCT":69876, "GCCCC":74884, "GCCCG":65788, "GCCGA":87903, "GCCGT":62152, "GCCGC":106554, "GCCGG":91519, "GCGAA":52747, "GCGAT":52426, "GCGAC":51848, "GCGAG":63413, "GCGTA":23794, "GCGTT":40492, "GCGTC":44746, "GCGTG":45505, "GCGCA":54716, "GCGCT":48717, "GCGCC":77318, "GCGCG":60583, "GCGGA":66099, "GCGGT":67222, "GCGGC":101127, "GCGGG":78230, "GGAAA":84387, "GGAAT":56675, "GGAAC":59535, "GGAAG":772603, "GGATA":46897, "GGATT":62173, "GGATC":47996, "GGATG":72413, "GGACA":53451, "GGACT":36466, "GGACC":43372, "GGACG":55454, "GGAGA":184356, "GGAGT":41288, "GGAGC":69550, "GGAGG":210478, "GGTAA":32829, "GGTAT":31845, "GGTAC":29143, "GGTAG":62743, "GGTTA":31833, "GGTTT":80872, "GGTTC":54308, "GGTTG":97510, "GGTCA":53644, "GGTCT":53362, "GGTCC":42760, "GGTCG":60250, "GGTGA":83123, "GGTGT":65752, "GGTGC":70373, "GGTGG":147407, "GGCAA":70950, "GGCAT":53569, "GGCAC":46499, "GGCAG":107348, "GGCTA":36648, "GGCTT":74750, "GGCTC":52284, "GGCTG":89286, "GGCCA":76132, "GGCCT":59132, "GGCCC":53841, "GGCCG":80841, "GGCGA":93082, "GGCGT":56137, "GGCGC":75681, "GGCGG":121213, "GGGAA":69381, "GGGAT":58827, "GGGAC":43037, "GGGAG":130754, "GGGTA":35006, "GGGTT":81341, "GGGTC":49363, "GGGTG":92205, "GGGCA":74991, "GGGCT":60104, "GGGCC":51564, "GGGCG":79552, "GGGGA":90458, "GGGGT":77545, "GGGGC":65678, "GGGGG":184742 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1245472, "total_bases": 75973792, "q20_bases": 73536272, "q30_bases": 69799319, "total_cycles": 61, "quality_curves": { "A":[39.3419,39.2574,39.1077,39.0183,39.1251,39.2365,39.2522,39.1728,39.155,39.2124,39.1849,39.2045,39.2127,39.1859,39.1356,39.1166,39.2164,39.1554,39.2484,39.1031,38.4409,39.1209,39.1774,39.1867,38.6148,39.0974,39.1415,38.4161,39.0122,38.0834,39.0855,39.1783,39.0602,39.0075,38.5043,39.0115,38.5536,39.0502,38.4441,38.9981,38.8078,38.6566,38.6395,38.4249,38.3659,38.6262,38.594,37.5867,38.0281,37.1065,36.8447,36.4032,37.4247,37.0691,36.5208,35.0405,34.6317,33.9761,33.4992,33.7516,32.6566], 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"CTTGT":56621, "CTTGC":55970, "CTTGG":65011, "CTCAA":50897, "CTCAT":41815, "CTCAC":44399, "CTCAG":36295, "CTCTA":26723, "CTCTT":67270, "CTCTC":64140, "CTCTG":45020, "CTCCA":82764, "CTCCT":189388, "CTCCC":134235, "CTCCG":57996, "CTCGA":49783, "CTCGT":46596, "CTCGC":49511, "CTCGG":52387, "CTGAA":48261, "CTGAT":44624, "CTGAC":35137, "CTGAG":36447, "CTGTA":22971, "CTGTT":61575, "CTGTC":37265, "CTGTG":38866, "CTGCA":56163, "CTGCT":134299, "CTGCC":84182, "CTGCG":50733, "CTGGA":68761, "CTGGT":73539, "CTGGC":69209, "CTGGG":69037, "CCAAA":88693, "CCAAT":47447, "CCAAC":95133, "CCAAG":65527, "CCATA":33734, "CCATT":49216, "CCATC":76254, "CCATG":51107, "CCACA":76402, "CCACT":40429, "CCACC":165961, "CCACG":53953, "CCAGA":59049, "CCAGT":47915, "CCAGC":104343, "CCAGG":74144, "CCTAA":24693, "CCTAT":26280, "CCTAC":34837, "CCTAG":15309, "CCTTA":21718, "CCTTT":73664, "CCTTC":107298, "CCTTG":72079, "CCTCA":62574, "CCTCT":71954, "CCTCC":243563, "CCTCG":69933, "CCTGA":51405, "CCTGT":55161, "CCTGC":121541, "CCTGG":74808, "CCCAA":88861, "CCCAT":55721, "CCCAC":102364, "CCCAG":73295, "CCCTA":30112, "CCCTT":69152, "CCCTC":132755, "CCCTG":64958, "CCCCA":100765, "CCCCT":84774, "CCCCC":99772, "CCCCG":65279, "CCCGA":49669, "CCCGT":39251, "CCCGC":80255, "CCCGG":60350, "CCGAA":52493, "CCGAT":49259, "CCGAC":54721, "CCGAG":55033, "CCGTA":28334, "CCGTT":40195, "CCGTC":56332, "CCGTG":41623, "CCGCA":57895, "CCGCT":57118, "CCGCC":121749, "CCGCG":62652, "CCGGA":53169, "CCGGT":52946, "CCGGC":85079, "CCGGG":57468, "CGAAA":49884, "CGAAT":35753, "CGAAC":40856, "CGAAG":57082, "CGATA":30954, "CGATT":41361, "CGATC":51003, "CGATG":62423, "CGACA":42052, "CGACT":35083, "CGACC":63383, "CGACG":63193, "CGAGA":48371, "CGAGT":27413, "CGAGC":49664, "CGAGG":64008, "CGTAA":25539, "CGTAT":19622, "CGTAC":21125, "CGTAG":28176, "CGTTA":16974, "CGTTT":38654, "CGTTC":42744, "CGTTG":44710, "CGTCA":38174, "CGTCT":39130, "CGTCC":53898, "CGTCG":60772, "CGTGA":38403, "CGTGT":25282, "CGTGC":34978, "CGTGG":49948, "CGCAA":40507, "CGCAT":31754, "CGCAC":42732, "CGCAG":47331, "CGCTA":17946, "CGCTT":44490, "CGCTC":45459, "CGCTG":60664, "CGCCA":72464, "CGCCT":68987, "CGCCC":82281, "CGCCG":100002, "CGCGA":40549, "CGCGT":29694, "CGCGC":54837, "CGCGG":61345, "CGGAA":51355, "CGGAT":42286, "CGGAC":32429, "CGGAG":52892, "CGGTA":28690, "CGGTT":45233, "CGGTC":48250, "CGGTG":67126, "CGGCA":66720, "CGGCT":65746, "CGGCC":74521, "CGGCG":97018, "CGGGA":48080, "CGGGT":46772, "CGGGC":55664, "CGGGG":57706, "GAAAA":84739, "GAAAT":58853, "GAAAC":53264, "GAAAG":61878, "GAATA":35191, "GAATT":47375, "GAATC":45923, "GAATG":41056, "GAACA":49267, "GAACT":41687, "GAACC":50931, "GAACG":41110, "GAAGA":97503, "GAAGT":44755, "GAAGC":72539, "GAAGG":89850, "GATAA":40207, "GATAT":35799, "GATAC":26098, "GATAG":30394, "GATTA":29264, "GATTT":64943, "GATTC":47446, "GATTG":47048, "GATCA":49889, "GATCT":50847, "GATCC":46166, "GATCG":47843, "GATGA":78131, "GATGT":43691, "GATGC":50227, "GATGG":73123, "GACAA":48235, "GACAT":35781, "GACAC":30220, "GACAG":34386, "GACTA":17353, "GACTT":44170, "GACTC":25713, "GACTG":31411, "GACCA":56439, "GACCT":43369, "GACCC":50191, "GACCG":49186, "GACGA":64169, "GACGT":29541, "GACGC":41951, "GACGG":52083, "GAGAA":76615, "GAGAT":58045, "GAGAC":47753, "GAGAG":56157, "GAGTA":20801, "GAGTT":39794, "GAGTC":24498, "GAGTG":29916, "GAGCA":64449, "GAGCT":37206, "GAGCC":46287, "GAGCG":40861, "GAGGA":158957, "GAGGT":52789, "GAGGC":61769, "GAGGG":96660, "GTAAA":27947, "GTAAT":25563, "GTAAC":22527, "GTAAG":19874, "GTATA":14734, "GTATT":29581, "GTATC":23943, "GTATG":26014, "GTACA":24647, "GTACT":21936, "GTACC":25986, "GTACG":21227, "GTAGA":32610, "GTAGT":26780, "GTAGC":33168, "GTAGG":29924, "GTTAA":18671, "GTTAT":24106, "GTTAC":25198, "GTTAG":17937, "GTTTA":28291, "GTTTT":71144, "GTTTC":55663, "GTTTG":63242, "GTTCA":41638, "GTTCT":48220, "GTTCC":60102, "GTTCG":41342, "GTTGA":54295, "GTTGT":63402, "GTTGC":51771, "GTTGG":86450, "GTCAA":37458, "GTCAT":36153, "GTCAC":30591, "GTCAG":31002, "GTCTA":19647, "GTCTT":46218, "GTCTC":48654, "GTCTG":37430, "GTCCA":47458, "GTCCT":51767, "GTCCC":42353, "GTCCG":32325, "GTCGA":49036, "GTCGT":46269, "GTCGC":43892, "GTCGG":48784, "GTGAA":51507, "GTGAT":45160, "GTGAC":28842, "GTGAG":39499, "GTGTA":18168, "GTGTT":48123, "GTGTC":27446, "GTGTG":49774, "GTGCA":31639, "GTGCT":48397, "GTGCC":42742, "GTGCG":37711, "GTGGA":60324, "GTGGT":89858, "GTGGC":60806, "GTGGG":79273, "GCAAA":50338, "GCAAT":38443, "GCAAC":50546, "GCAAG":51823, "GCATA":24726, "GCATT":40734, "GCATC":48060, "GCATG":40747, "GCACA":36566, "GCACT":24803, "GCACC":70923, "GCACG":35418, "GCAGA":51068, "GCAGT":37367, "GCAGC":99510, "GCAGG":103774, "GCTAA":17926, "GCTAT":24406, "GCTAC":34692, "GCTAG":18628, "GCTTA":23406, "GCTTT":59502, "GCTTC":79137, "GCTTG":64202, "GCTCA":40913, "GCTCT":41791, "GCTCC":70255, "GCTCG":50458, "GCTGA":53394, "GCTGT":50930, "GCTGC":103754, "GCTGG":101033, "GCCAA":65774, "GCCAT":50177, "GCCAC":64102, "GCCAG":67549, "GCCTA":22224, "GCCTT":57408, "GCCTC":66970, "GCCTG":71563, "GCCCA":67998, "GCCCT":64269, "GCCCC":67586, "GCCCG":58389, "GCCGA":73986, "GCCGT":56028, "GCCGC":94344, "GCCGG":80871, "GCGAA":44158, "GCGAT":47007, "GCGAC":46235, "GCGAG":44486, "GCGTA":18474, "GCGTT":36962, "GCGTC":39919, "GCGTG":40819, "GCGCA":43477, "GCGCT":43150, "GCGCC":68608, "GCGCG":52465, "GCGGA":54219, "GCGGT":61575, "GCGGC":90134, "GCGGG":69670, "GGAAA":71392, "GGAAT":52847, "GGAAC":54364, "GGAAG":87996, "GGATA":38700, "GGATT":57881, "GGATC":44011, "GGATG":66541, "GGACA":43349, "GGACT":33408, "GGACC":39433, "GGACG":49367, "GGAGA":96613, "GGAGT":38076, "GGAGC":63178, "GGAGG":188798, "GGTAA":27733, "GGTAT":29705, "GGTAC":26776, "GGTAG":37789, "GGTTA":24795, "GGTTT":75444, "GGTTC":50276, "GGTTG":90689, "GGTCA":42588, "GGTCT":49027, "GGTCC":38982, "GGTCG":53696, "GGTGA":68551, "GGTGT":60764, "GGTGC":63965, "GGTGG":134724, "GGCAA":59590, "GGCAT":49596, "GGCAC":41963, "GGCAG":71773, "GGCTA":28910, "GGCTT":69151, "GGCTC":47879, "GGCTG":81161, "GGCCA":61145, "GGCCT":53901, "GGCCC":48350, "GGCCG":70939, "GGCGA":77005, "GGCGT":50575, "GGCGC":65792, "GGCGG":108046, "GGGAA":58357, "GGGAT":54046, "GGGAC":39009, "GGGAG":99103, "GGGTA":27192, "GGGTT":75506, "GGGTC":45267, "GGGTG":83664, "GGGCA":60439, "GGGCT":54996, "GGGCC":45956, "GGGCG":70436, "GGGGA":75380, "GGGGT":70211, "GGGGC":59088, "GGGGG":72445 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-32A_S35_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-32A_S35_R2_001.fastq.gz -o AM-AL-32A.trim.R1.fastq.gz -O AM-AL-32A.trim.R2.fastq.gz -m --merged_out AM-AL-32A.trim.merged.fastq.gz " }