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"CTCGC":49008, "CTCGG":51643, "CTGAA":348712, "CTGAT":44948, "CTGAC":35447, "CTGAG":98372, "CTGTA":57081, "CTGTT":59483, "CTGTC":36349, "CTGTG":38254, "CTGCA":58838, "CTGCT":126672, "CTGCC":80881, "CTGCG":50212, "CTGGA":72815, "CTGGT":71668, "CTGGC":71674, "CTGGG":92891, "CCAAA":80838, "CCAAT":43991, "CCAAC":92274, "CCAAG":77420, "CCATA":35636, "CCATT":46008, "CCATC":74760, "CCATG":48301, "CCACA":78680, "CCACT":39139, "CCACC":164775, "CCACG":56272, "CCAGA":140302, "CCAGT":186113, "CCAGC":103005, "CCAGG":73441, "CCTAA":23866, "CCTAT":24351, "CCTAC":32511, "CCTAG":34152, "CCTTA":27632, "CCTTT":66313, "CCTTC":98485, "CCTTG":66755, "CCTCA":68290, "CCTCT":67075, "CCTCC":225905, "CCTCG":68259, "CCTGA":53087, "CCTGT":52898, "CCTGC":115324, "CCTGG":74185, "CCCAA":87742, "CCCAT":53531, "CCCAC":100695, "CCCAG":95565, "CCCTA":34038, "CCCTT":61749, "CCCTC":122887, "CCCTG":62647, "CCCCA":105026, "CCCCT":79036, "CCCCC":103580, "CCCCG":66849, "CCCGA":54871, "CCCGT":40715, "CCCGC":81716, 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"CGGAT":42248, "CGGAC":33950, "CGGAG":68644, "CGGTA":33557, "CGGTT":44441, "CGGTC":48042, "CGGTG":69824, "CGGCA":73417, "CGGCT":64603, "CGGCC":74842, "CGGCG":101120, "CGGGA":53658, "CGGGT":47678, "CGGGC":57657, "CGGGG":60940, "GAAAA":83739, "GAAAT":53719, "GAAAC":50424, "GAAAG":70777, "GAATA":35204, "GAATT":42002, "GAATC":42435, "GAATG":38097, "GAACA":53466, "GAACT":291315, "GAACC":51163, "GAACG":40664, "GAAGA":789071, "GAAGT":42644, "GAAGC":70102, "GAAGG":85463, "GATAA":38706, "GATAT":33624, "GATAC":24520, "GATAG":46503, "GATTA":29857, "GATTT":58632, "GATTC":44149, "GATTG":46727, "GATCA":55121, "GATCT":49237, "GATCC":46862, "GATCG":808626, "GATGA":79355, "GATGT":42404, "GATGC":49758, "GATGG":72880, "GACAA":50063, "GACAT":32989, "GACAC":30290, "GACAG":49560, "GACTA":20279, "GACTT":39789, "GACTC":26299, "GACTG":31672, "GACCA":62710, "GACCT":43050, "GACCC":50796, "GACCG":49481, "GACGA":69779, "GACGT":30847, "GACGC":43884, "GACGG":52450, "GAGAA":77235, "GAGAT":224056, "GAGAC":47482, "GAGAG":66889, "GAGTA":22811, "GAGTT":39744, "GAGTC":25074, "GAGTG":27921, "GAGCA":640074, "GAGCT":78465, "GAGCC":47287, "GAGCG":43948, "GAGGA":163490, "GAGGT":55085, "GAGGC":63661, "GAGGG":92812, "GTAAA":25887, "GTAAT":22503, "GTAAC":20526, "GTAAG":25229, "GTATA":15380, "GTATT":27481, "GTATC":52617, "GTATG":23374, "GTACA":22449, "GTACT":18529, "GTACC":24070, "GTACG":20156, "GTAGA":85227, "GTAGT":24293, "GTAGC":30126, "GTAGG":28305, "GTTAA":18361, "GTTAT":23034, "GTTAC":23106, "GTTAG":33141, "GTTTA":28236, "GTTTT":67444, "GTTTC":53115, "GTTTG":63321, "GTTCA":43562, "GTTCT":47615, "GTTCC":60203, "GTTCG":41379, "GTTGA":56396, "GTTGT":62659, "GTTGC":51377, "GTTGG":88878, "GTCAA":39460, "GTCAT":35217, "GTCAC":120765, "GTCAG":47527, "GTCTA":22830, "GTCTT":46146, "GTCTC":46865, "GTCTG":390199, "GTCCA":48224, "GTCCT":48928, "GTCCC":41585, "GTCCG":33125, "GTCGA":50122, "GTCGT":46589, "GTCGC":44704, "GTCGG":49230, "GTGAA":48234, "GTGAT":44642, "GTGAC":28760, "GTGAG":49200, "GTGTA":20423, "GTGTT":48376, "GTGTC":26806, "GTGTG":48940, "GTGCA":34136, "GTGCT":47864, "GTGCC":41255, "GTGCG":36853, "GTGGA":64056, "GTGGT":94324, "GTGGC":60697, "GTGGG":81826, "GCAAA":51545, "GCAAT":35942, "GCAAC":49270, "GCAAG":61432, "GCATA":26972, "GCATT":36405, "GCATC":46320, "GCATG":36267, "GCACA":557762, "GCACT":24512, "GCACC":70280, "GCACG":35565, "GCAGA":123446, "GCAGT":35567, "GCAGC":91399, "GCAGG":102390, "GCTAA":19487, "GCTAT":24684, "GCTAC":31425, "GCTAG":33157, "GCTTA":25269, "GCTTT":56608, "GCTTC":75868, "GCTTG":60336, "GCTCA":43895, "GCTCT":42773, "GCTCC":71289, "GCTCG":49818, "GCTGA":57772, "GCTGT":85282, "GCTGC":96202, "GCTGG":101392, "GCCAA":69812, "GCCAT":49906, "GCCAC":64068, "GCCAG":92427, "GCCTA":27482, "GCCTT":56803, "GCCTC":67287, "GCCTG":70774, "GCCCA":74589, "GCCCT":59934, "GCCCC":68147, "GCCCG":60079, "GCCGA":78760, "GCCGT":56904, "GCCGC":94264, "GCCGG":83446, "GCGAA":48637, "GCGAT":49332, "GCGAC":48228, "GCGAG":57246, "GCGTA":21521, "GCGTT":37111, "GCGTC":40004, "GCGTG":38888, "GCGCA":46743, "GCGCT":43132, "GCGCC":65978, "GCGCG":50164, "GCGGA":61222, "GCGGT":61201, "GCGGC":89095, "GCGGG":73805, "GGAAA":74824, "GGAAT":47976, "GGAAC":54237, "GGAAG":769352, "GGATA":41763, "GGATT":54015, "GGATC":44488, "GGATG":66985, "GGACA":47018, "GGACT":33208, "GGACC":39403, "GGACG":51403, "GGAGA":159998, "GGAGT":38098, "GGAGC":65966, "GGAGG":189969, "GGTAA":29347, "GGTAT":27727, "GGTAC":24970, "GGTAG":56223, "GGTTA":29677, "GGTTT":74214, "GGTTC":50733, "GGTTG":92288, "GGTCA":49193, "GGTCT":49003, "GGTCC":38240, "GGTCG":54151, "GGTGA":75050, "GGTGT":62165, "GGTGC":63989, "GGTGG":144120, "GGCAA":63636, "GGCAT":48253, "GGCAC":42134, "GGCAG":96035, "GGCTA":34227, "GGCTT":66096, "GGCTC":47543, "GGCTG":84423, "GGCCA":70578, "GGCCT":55012, "GGCCC":49532, "GGCCG":73669, "GGCGA":87895, "GGCGT":51341, "GGCGC":65135, "GGCGG":115025, "GGGAA":63724, "GGGAT":52971, "GGGAC":39996, "GGGAG":115675, "GGGTA":31717, "GGGTT":77486, "GGGTC":45047, "GGGTG":89984, "GGGCA":66325, "GGGCT":56291, "GGGCC":48310, "GGGCG":72840, "GGGGA":82013, "GGGGT":80844, "GGGGC":61473, "GGGGG":309392 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1145144, "total_bases": 69853784, "q20_bases": 67244758, "q30_bases": 63415808, "total_cycles": 61, "quality_curves": { "A":[39.3467,39.2907,39.2135,38.9051,38.9344,39.0898,39.2004,39.1719,39.2045,39.1905,39.2138,39.2039,39.2222,39.193,39.1151,39.1233,39.2043,39.1423,39.223,39.0979,38.1465,39.1007,39.1485,39.1905,38.3555,39.097,39.136,38.0948,38.9888,37.5469,39.0296,39.145,38.9942,39.0255,38.8593,38.931,38.8908,38.9327,38.8401,38.8825,38.6909,38.4376,38.4937,38.2607,38.1972,38.468,38.4486,36.7887,37.8104,36.8147,36.498,36.0216,37.0591,36.7563,36.2066,34.7221,34.5407,33.9533,33.5927,33.864,33.1569], 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"CTTGT":48407, "CTTGC":47639, "CTTGG":56726, "CTCAA":43652, "CTCAT":37005, "CTCAC":37513, "CTCAG":31722, "CTCTA":22997, "CTCTT":59766, "CTCTC":52537, "CTCTG":40799, "CTCCA":73714, "CTCCT":160996, "CTCCC":110639, "CTCCG":53776, "CTCGA":44603, "CTCGT":40338, "CTCGC":44068, "CTCGG":46348, "CTGAA":42668, "CTGAT":40808, "CTGAC":31566, "CTGAG":32358, "CTGTA":19161, "CTGTT":54730, "CTGTC":33030, "CTGTG":34719, "CTGCA":48735, "CTGCT":116907, "CTGCC":73381, "CTGCG":44794, "CTGGA":62472, "CTGGT":65585, "CTGGC":64136, "CTGGG":61190, "CCAAA":70374, "CCAAT":40445, "CCAAC":83878, "CCAAG":55806, "CCATA":28450, "CCATT":42379, "CCATC":68044, "CCATG":43767, "CCACA":66336, "CCACT":35629, "CCACC":149122, "CCACG":49977, "CCAGA":52797, "CCAGT":42672, "CCAGC":91825, "CCAGG":65389, "CCTAA":19602, "CCTAT":22214, "CCTAC":29338, "CCTAG":13351, "CCTTA":19318, "CCTTT":61345, "CCTTC":89605, "CCTTG":60980, "CCTCA":54675, "CCTCT":61647, "CCTCC":202068, "CCTCG":61780, "CCTGA":44753, "CCTGT":48649, "CCTGC":104655, "CCTGG":66738, "CCCAA":75380, "CCCAT":48581, "CCCAC":90487, "CCCAG":64776, "CCCTA":25438, "CCCTT":55955, "CCCTC":107678, "CCCTG":56657, "CCCCA":86910, "CCCCT":70417, "CCCCC":82697, "CCCCG":59733, "CCCGA":45435, "CCCGT":35791, "CCCGC":72330, "CCCGG":55197, "CCGAA":46858, "CCGAT":44188, "CCGAC":49341, "CCGAG":48317, "CCGTA":23674, "CCGTT":36361, "CCGTC":51962, "CCGTG":36179, "CCGCA":50896, "CCGCT":52298, "CCGCC":111124, "CCGCG":52451, "CCGGA":50690, "CCGGT":49194, "CCGGC":76831, "CCGGG":52572, "CGAAA":43716, "CGAAT":30908, "CGAAC":37586, "CGAAG":52007, "CGATA":26888, "CGATT":37710, "CGATC":47403, "CGATG":56206, "CGACA":37947, "CGACT":30943, "CGACC":57469, "CGACG":58126, "CGAGA":43510, "CGAGT":24528, "CGAGC":44779, "CGAGG":58338, "CGTAA":20231, "CGTAT":16765, "CGTAC":18062, "CGTAG":22561, "CGTTA":14944, "CGTTT":34424, "CGTTC":37959, "CGTTG":40152, "CGTCA":34598, "CGTCT":36631, "CGTCC":48053, "CGTCG":53731, "CGTGA":30813, "CGTGT":21976, "CGTGC":30106, "CGTGG":44916, "CGCAA":34795, "CGCAT":27143, "CGCAC":37029, "CGCAG":41967, "CGCTA":16082, "CGCTT":40409, "CGCTC":42920, "CGCTG":52863, "CGCCA":66197, "CGCCT":63069, "CGCCC":72935, "CGCCG":89465, "CGCGA":35914, "CGCGT":25898, "CGCGC":45107, "CGCGG":52395, "CGGAA":45053, "CGGAT":38108, "CGGAC":29777, "CGGAG":49504, "CGGTA":25735, "CGGTT":40856, "CGGTC":42973, "CGGTG":62253, "CGGCA":58835, "CGGCT":58273, "CGGCC":66502, "CGGCG":88369, "CGGGA":44820, "CGGGT":43044, "CGGGC":50789, "CGGGG":53896, "GAAAA":72585, "GAAAT":48812, "GAAAC":46130, "GAAAG":52264, "GAATA":29452, "GAATT":38958, "GAATC":38987, "GAATG":35128, "GAACA":43425, "GAACT":37812, "GAACC":45762, "GAACG":36588, "GAAGA":84034, "GAAGT":38783, "GAAGC":63220, "GAAGG":77078, "GATAA":33674, "GATAT":31094, "GATAC":22291, "GATAG":26600, "GATTA":24047, "GATTT":54518, "GATTC":40575, "GATTG":42203, "GATCA":44434, "GATCT":44686, "GATCC":41933, "GATCG":44037, "GATGA":68228, "GATGT":38624, "GATGC":44803, "GATGG":66399, "GACAA":43116, "GACAT":29859, "GACAC":26595, "GACAG":30292, "GACTA":15849, "GACTT":36675, "GACTC":23625, "GACTG":28076, "GACCA":52043, "GACCT":38891, "GACCC":45645, "GACCG":43918, "GACGA":59574, "GACGT":27229, "GACGC":38964, "GACGG":47254, "GAGAA":67452, "GAGAT":49909, "GAGAC":43009, "GAGAG":47728, "GAGTA":18025, "GAGTT":35888, "GAGTC":22717, "GAGTG":25161, "GAGCA":58337, "GAGCT":33267, "GAGCC":41899, "GAGCG":37900, "GAGGA":138093, "GAGGT":49106, "GAGGC":57148, "GAGGG":81765, "GTAAA":22966, "GTAAT":20835, "GTAAC":18298, "GTAAG":15450, "GTATA":12406, "GTATT":25497, "GTATC":20671, "GTATG":20992, "GTACA":18608, "GTACT":17242, "GTACC":21774, "GTACG":18038, "GTAGA":26505, "GTAGT":22338, "GTAGC":27486, "GTAGG":24698, "GTTAA":15652, "GTTAT":21129, "GTTAC":21260, "GTTAG":14886, "GTTTA":22024, "GTTTT":62630, "GTTTC":48570, "GTTTG":58858, "GTTCA":35988, "GTTCT":43528, "GTTCC":54365, "GTTCG":37178, "GTTGA":48172, "GTTGT":57497, "GTTGC":46795, "GTTGG":81795, "GTCAA":33706, "GTCAT":32193, "GTCAC":26936, "GTCAG":27497, "GTCTA":17009, "GTCTT":42289, "GTCTC":43735, "GTCTG":34061, "GTCCA":40322, "GTCCT":44593, "GTCCC":38304, "GTCCG":29409, "GTCGA":41937, "GTCGT":41297, "GTCGC":40019, "GTCGG":43268, "GTGAA":41208, "GTGAT":40066, "GTGAC":25822, "GTGAG":33536, "GTGTA":14994, "GTGTT":44460, "GTGTC":24238, "GTGTG":43899, "GTGCA":27546, "GTGCT":43173, "GTGCC":37077, "GTGCG":32828, "GTGGA":54317, "GTGGT":85600, "GTGGC":54215, "GTGGG":72319, "GCAAA":43549, "GCAAT":32925, "GCAAC":44590, "GCAAG":43641, "GCATA":21059, "GCATT":33581, "GCATC":41994, "GCATG":32837, "GCACA":31941, "GCACT":22089, "GCACC":62211, "GCACG":31188, "GCAGA":47760, "GCAGT":32346, "GCAGC":82377, "GCAGG":90683, "GCTAA":15521, "GCTAT":22517, "GCTAC":28384, "GCTAG":14749, "GCTTA":18800, "GCTTT":52115, "GCTTC":69604, "GCTTG":55264, "GCTCA":36324, "GCTCT":38779, "GCTCC":65153, "GCTCG":44286, "GCTGA":48265, "GCTGT":45469, "GCTGC":87933, "GCTGG":91134, "GCCAA":58717, "GCCAT":45333, "GCCAC":57541, "GCCAG":60203, "GCCTA":19940, "GCCTT":51960, "GCCTC":61602, "GCCTG":63672, "GCCCA":60827, "GCCCT":54273, "GCCCC":60853, "GCCCG":52369, "GCCGA":65731, "GCCGT":50777, "GCCGC":82792, "GCCGG":73074, "GCGAA":39973, "GCGAT":43754, "GCGAC":42918, "GCGAG":40705, "GCGTA":16431, "GCGTT":33509, "GCGTC":35200, "GCGTG":34581, "GCGCA":37073, "GCGCT":38166, "GCGCC":58032, "GCGCG":43639, "GCGGA":49878, "GCGGT":55232, "GCGGC":78724, "GCGGG":65193, "GGAAA":61281, "GGAAT":44134, "GGAAC":49142, "GGAAG":74921, "GGATA":33313, "GGATT":49918, "GGATC":40191, "GGATG":60765, "GGACA":37267, "GGACT":29789, "GGACC":35471, "GGACG":45398, "GGAGA":86543, "GGAGT":34354, "GGAGC":59015, "GGAGG":166215, "GGTAA":24026, "GGTAT":25792, "GGTAC":22563, "GGTAG":32130, "GGTTA":21798, "GGTTT":68900, "GGTTC":46516, "GGTTG":83918, "GGTCA":38766, "GGTCT":44648, "GGTCC":34591, "GGTCG":47857, "GGTGA":61547, "GGTGT":55416, "GGTGC":56983, "GGTGG":126134, "GGCAA":53056, "GGCAT":43959, "GGCAC":37428, "GGCAG":63939, "GGCTA":26419, "GGCTT":60444, "GGCTC":43371, "GGCTG":76204, "GGCCA":56385, "GGCCT":49448, "GGCCC":43843, "GGCCG":64559, "GGCGA":72984, "GGCGT":45943, "GGCGC":56573, "GGCGG":101419, "GGGAA":52369, "GGGAT":48018, "GGGAC":35325, "GGGAG":86945, "GGGTA":23980, "GGGTT":70340, "GGGTC":40847, "GGGTG":75173, "GGGCA":53173, "GGGCT":50926, "GGGCC":42848, "GGGCG":64183, "GGGGA":67666, "GGGGT":64464, "GGGGC":55022, "GGGGG":65566 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-31A_S32_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-31A_S32_R2_001.fastq.gz -o AM-AL-31A.trim.R1.fastq.gz -O AM-AL-31A.trim.R2.fastq.gz -m --merged_out AM-AL-31A.trim.merged.fastq.gz " }