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"TTCTT":133183, "TTCTC":98384, "TTCTG":83008, "TTCCA":100287, "TTCCT":116319, "TTCCC":78909, "TTCCG":73708, "TTCGA":61749, "TTCGT":60506, "TTCGC":59770, "TTCGG":67412, "TTGAA":90233, "TTGAT":83444, "TTGAC":55041, "TTGAG":77768, "TTGTA":55054, "TTGTT":97223, "TTGTC":66005, "TTGTG":68398, "TTGCA":53315, "TTGCT":77543, "TTGCC":82692, "TTGCG":55016, "TTGGA":90070, "TTGGT":104537, "TTGGC":90040, "TTGGG":97083, "TCAAA":83980, "TCAAT":60040, "TCAAC":75909, "TCAAG":80152, "TCATA":40956, "TCATT":62728, "TCATC":106132, "TCATG":53218, "TCACA":107082, "TCACT":36393, "TCACC":94176, "TCACG":51153, "TCAGA":120735, "TCAGT":39060, "TCAGC":72182, "TCAGG":64603, "TCTAA":35918, "TCTAT":40136, "TCTAC":52958, "TCTAG":35060, "TCTTA":35875, "TCTTT":110715, "TCTTC":121456, "TCTTG":77673, "TCTCA":53954, "TCTCT":79834, "TCTCC":114736, "TCTCG":57873, "TCTGA":405795, "TCTGT":44196, "TCTGC":72121, "TCTGG":88769, "TCCAA":89672, "TCCAT":77819, "TCCAC":77396, "TCCAG":257873, "TCCTA":34867, "TCCTT":94347, "TCCTC":153007, "TCCTG":119189, "TCCCA":77652, "TCCCT":74591, "TCCCC":94687, "TCCCG":64387, "TCCGA":49013, "TCCGT":48870, "TCCGC":70606, "TCCGG":70339, "TCGAA":64430, "TCGAT":82365, "TCGAC":58817, "TCGAG":64155, "TCGTA":44989, "TCGTT":52493, "TCGTC":73402, "TCGTG":46416, "TCGCA":40859, "TCGCT":49280, "TCGCC":96152, "TCGCG":47452, "TCGGA":929366, "TCGGT":57955, "TCGGC":86426, "TCGGG":55761, "TGAAA":94083, "TGAAT":64777, "TGAAC":354707, "TGAAG":114482, "TGATA":51536, "TGATT":76740, "TGATC":66679, "TGATG":83863, "TGACA":42736, "TGACT":36246, "TGACC":64111, "TGACG":47285, "TGAGA":102012, "TGAGT":35167, "TGAGC":54006, "TGAGG":70952, "TGTAA":30113, "TGTAT":30556, "TGTAC":32902, "TGTAG":58330, "TGTTA":42345, "TGTTT":82673, "TGTTC":67436, "TGTTG":92470, "TGTCA":40784, "TGTCT":48635, "TGTCC":55790, "TGTCG":47123, "TGTGA":46099, "TGTGT":39041, "TGTGC":43094, "TGTGG":75505, "TGCAA":51467, "TGCAT":45572, "TGCAC":43574, "TGCAG":87734, "TGCTA":35731, "TGCTT":89644, "TGCTC":76386, "TGCTG":114788, 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"CACCC":115965, "CACCG":85692, "CACGA":54366, "CACGT":539559, "CACGC":53040, "CACGG":51994, "CAGAA":84202, "CAGAT":356193, "CAGAC":48867, "CAGAG":66259, "CAGTA":41009, "CAGTT":59910, "CAGTC":146483, "CAGTG":32924, "CAGCA":122512, "CAGCT":71203, "CAGCC":100830, "CAGCG":65401, "CAGGA":121114, "CAGGT":68713, "CAGGC":80745, "CAGGG":69544, "CTAAA":43992, "CTAAT":25195, "CTAAC":29444, "CTAAG":32485, "CTATA":25026, "CTATT":39152, "CTATC":41368, "CTATG":31325, "CTACA":45604, "CTACT":36751, "CTACC":52479, "CTACG":41712, "CTAGA":93133, "CTAGT":19515, "CTAGC":26482, "CTAGG":19706, "CTTAA":28628, "CTTAT":42697, "CTTAC":28227, "CTTAG":41708, "CTTTA":65092, "CTTTT":105103, "CTTTC":89618, "CTTTG":81069, "CTTCA":111375, "CTTCT":114035, "CTTCC":100611, "CTTCG":74488, "CTTGA":77767, "CTTGT":70446, "CTTGC":68432, "CTTGG":86298, "CTCAA":68962, "CTCAT":51924, "CTCAC":51470, "CTCAG":67539, "CTCTA":38465, "CTCTT":73879, "CTCTC":75654, "CTCTG":56726, "CTCCA":274773, "CTCCT":148842, "CTCCC":106554, "CTCCG":69206, "CTCGA":80559, "CTCGT":52660, "CTCGC":57848, "CTCGG":62681, "CTGAA":405062, "CTGAT":59148, "CTGAC":43124, "CTGAG":60750, "CTGTA":35861, "CTGTT":79310, "CTGTC":43568, "CTGTG":45130, "CTGCA":76900, "CTGCT":126201, "CTGCC":95133, "CTGCG":58725, "CTGGA":96760, "CTGGT":88162, "CTGGC":83304, "CTGGG":92786, "CCAAA":129117, "CCAAT":64671, "CCAAC":117672, "CCAAG":108347, "CCATA":54086, "CCATT":66117, "CCATC":91042, "CCATG":63651, "CCACA":93247, "CCACT":45643, "CCACC":175322, "CCACG":62874, "CCAGA":181010, "CCAGT":184612, "CCAGC":123161, "CCAGG":88588, "CCTAA":37530, "CCTAT":32490, "CCTAC":39739, "CCTAG":43103, "CCTTA":34764, "CCTTT":89922, "CCTTC":104516, "CCTTG":84779, "CCTCA":83243, "CCTCT":76914, "CCTCC":173391, "CCTCG":75321, "CCTGA":72499, "CCTGT":67085, "CCTGC":128446, "CCTGG":87727, "CCCAA":116778, "CCCAT":69323, "CCCAC":111001, "CCCAG":114487, "CCCTA":43019, "CCCTT":71123, "CCCTC":104931, "CCCTG":74914, "CCCCA":124921, "CCCCT":82715, "CCCCC":110355, "CCCCG":81385, "CCCGA":65476, "CCCGT":47725, "CCCGC":99571, "CCCGG":74073, "CCGAA":75383, "CCGAT":58458, "CCGAC":63745, "CCGAG":82313, "CCGTA":42897, "CCGTT":52463, "CCGTC":64250, "CCGTG":49498, "CCGCA":77778, "CCGCT":66868, "CCGCC":151904, "CCGCG":79360, "CCGGA":75284, "CCGGT":63936, "CCGGC":97958, "CCGGG":72165, "CGAAA":76681, "CGAAT":52142, "CGAAC":54512, "CGAAG":88696, "CGATA":46524, "CGATT":60360, "CGATC":77632, "CGATG":71814, "CGACA":54468, "CGACT":41316, "CGACC":74796, "CGACG":71372, "CGAGA":106103, "CGAGT":36048, "CGAGC":61911, "CGAGG":73948, "CGTAA":38900, "CGTAT":25214, "CGTAC":26931, "CGTAG":53812, "CGTTA":29409, "CGTTT":53035, "CGTTC":53835, "CGTTG":57484, "CGTCA":51349, "CGTCT":477917, "CGTCC":57520, "CGTCG":68653, "CGTGA":52014, "CGTGT":30626, "CGTGC":39796, "CGTGG":56789, "CGCAA":60142, "CGCAT":40867, "CGCAC":51846, "CGCAG":74991, "CGCTA":26757, "CGCTT":55015, "CGCTC":55827, "CGCTG":68588, "CGCCA":99168, "CGCCT":81031, "CGCCC":102177, "CGCCG":122982, "CGCGA":52408, "CGCGT":37530, "CGCGC":70505, "CGCGG":78742, "CGGAA":927915, "CGGAT":55366, "CGGAC":42205, "CGGAG":83331, "CGGTA":44345, "CGGTT":59102, "CGGTC":60758, "CGGTG":79499, "CGGCA":89279, "CGGCT":80425, "CGGCC":85220, "CGGCG":119400, "CGGGA":67558, "CGGGT":56558, "CGGGC":68366, "CGGGG":74082, "GAAAA":129034, "GAAAT":89330, "GAAAC":80197, "GAAAG":99673, "GAATA":58738, "GAATT":71670, "GAATC":64765, "GAATG":55326, "GAACA":73777, "GAACT":319040, "GAACC":73454, "GAACG":54378, "GAAGA":968457, "GAAGT":62969, "GAAGC":96782, "GAAGG":98184, "GATAA":61549, "GATAT":52689, "GATAC":34868, "GATAG":64020, "GATTA":48732, "GATTT":94507, "GATTC":66254, "GATTG":68721, "GATCA":85767, "GATCT":66440, "GATCC":61026, "GATCG":998080, "GATGA":104775, "GATGT":53190, "GATGC":59938, "GATGG":87287, "GACAA":69781, "GACAT":45432, "GACAC":37574, "GACAG":61345, "GACTA":29285, "GACTT":57091, "GACTC":33820, "GACTG":42919, "GACCA":77795, "GACCT":57273, "GACCC":65254, "GACCG":62939, "GACGA":76581, "GACGT":34314, "GACGC":50792, "GACGG":60479, "GAGAA":100920, "GAGAT":267561, "GAGAC":63737, "GAGAG":86097, "GAGTA":32877, "GAGTT":52222, "GAGTC":31163, "GAGTG":34020, "GAGCA":764678, "GAGCT":49178, "GAGCC":63784, "GAGCG":52476, "GAGGA":152130, "GAGGT":62346, "GAGGC":75066, "GAGGG":82327, "GTAAA":43184, "GTAAT":35765, "GTAAC":33591, "GTAAG":38752, "GTATA":23006, "GTATT":40283, "GTATC":32864, "GTATG":35516, "GTACA":35709, "GTACT":29522, "GTACC":34282, "GTACG":26637, "GTAGA":119610, "GTAGT":34086, "GTAGC":44053, "GTAGG":36172, "GTTAA":29452, "GTTAT":33167, "GTTAC":33526, "GTTAG":47617, "GTTTA":48098, "GTTTT":95661, "GTTTC":80626, "GTTTG":84735, "GTTCA":63496, "GTTCT":64521, "GTTCC":75511, "GTTCG":50883, "GTTGA":77031, "GTTGT":82574, "GTTGC":62974, "GTTGG":103163, "GTCAA":55164, "GTCAT":46056, "GTCAC":107869, "GTCAG":58543, "GTCTA":34061, "GTCTT":58252, "GTCTC":59237, "GTCTG":443182, "GTCCA":67958, "GTCCT":54969, "GTCCC":49592, "GTCCG":39984, "GTCGA":61421, "GTCGT":54645, "GTCGC":54126, "GTCGG":58190, "GTGAA":81510, "GTGAT":56822, "GTGAC":37945, "GTGAG":58421, "GTGTA":25783, "GTGTT":54647, "GTGTC":33173, "GTGTG":46883, "GTGCA":43619, "GTGCT":54838, "GTGCC":48830, "GTGCG":43959, "GTGGA":74770, "GTGGT":92847, "GTGGC":69425, "GTGGG":87134, "GCAAA":74533, "GCAAT":56380, "GCAAC":64436, "GCAAG":84373, "GCATA":41042, "GCATT":55398, "GCATC":58637, "GCATG":47446, "GCACA":666033, "GCACT":31150, "GCACC":82152, "GCACG":42190, "GCAGA":153731, "GCAGT":46703, "GCAGC":102456, "GCAGG":119456, "GCTAA":29477, "GCTAT":33005, "GCTAC":44276, "GCTAG":46565, "GCTTA":38397, "GCTTT":76531, "GCTTC":99772, "GCTTG":87612, "GCTCA":58131, "GCTCT":50702, "GCTCC":78249, "GCTCG":59990, "GCTGA":77760, "GCTGT":59237, "GCTGC":100715, "GCTGG":117229, "GCCAA":95549, "GCCAT":61422, "GCCAC":75830, "GCCAG":111748, "GCCTA":34651, "GCCTT":67073, "GCCTC":77319, "GCCTG":84144, "GCCCA":93943, "GCCCT":71728, "GCCCC":82794, "GCCCG":71742, "GCCGA":95137, "GCCGT":68294, "GCCGC":117082, "GCCGG":96405, "GCGAA":63684, "GCGAT":62297, "GCGAC":56872, "GCGAG":68608, "GCGTA":28644, "GCGTT":49209, "GCGTC":47554, "GCGTG":47031, "GCGCA":58984, "GCGCT":51260, "GCGCC":82185, "GCGCG":67992, "GCGGA":75988, "GCGGT":76678, "GCGGC":111459, "GCGGG":88623, "GGAAA":107540, "GGAAT":75136, "GGAAC":74193, "GGAAG":933895, "GGATA":61926, "GGATT":82808, "GGATC":58877, "GGATG":79029, "GGACA":62860, "GGACT":49638, "GGACC":50589, "GGACG":56771, "GGAGA":190550, "GGAGT":48451, "GGAGC":75836, "GGAGG":153711, "GGTAA":44146, "GGTAT":39918, "GGTAC":35220, "GGTAG":72405, "GGTTA":42346, "GGTTT":100762, "GGTTC":68343, "GGTTG":112196, "GGTCA":64436, "GGTCT":66301, "GGTCC":47355, "GGTCG":66185, "GGTGA":94397, "GGTGT":66496, "GGTGC":73818, "GGTGG":143255, "GGCAA":84750, "GGCAT":62579, "GGCAC":52087, "GGCAG":116231, "GGCTA":43617, "GGCTT":92041, "GGCTC":62079, "GGCTG":97604, "GGCCA":78934, "GGCCT":61004, "GGCCC":56909, "GGCCG":85241, "GGCGA":103971, "GGCGT":60966, "GGCGC":81045, "GGCGG":138332, "GGGAA":77190, "GGGAT":70391, "GGGAC":51463, "GGGAG":110350, "GGGTA":40185, "GGGTT":93321, "GGGTC":57644, "GGGTG":89686, "GGGCA":84236, "GGGCT":68623, "GGGCC":55120, "GGGCG":91345, "GGGGA":89028, "GGGGT":82261, "GGGGC":74725, "GGGGG":190805 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1455322, "total_bases": 88774642, "q20_bases": 85840716, "q30_bases": 81411091, "total_cycles": 61, "quality_curves": { "A":[39.4808,39.1051,39.0809,39.0205,39.1046,39.2274,39.0841,39.1015,39.144,39.1694,39.1451,39.1319,39.166,39.165,39.1022,39.0815,39.2049,39.1199,39.184,39.0836,38.4344,39.1047,39.145,39.1742,38.5958,39.08,39.1321,38.4355,38.9778,38.1139,39.054,39.1727,39.055,39.0933,38.4373,39.0069,38.6233,38.8274,38.8873,39.0374,38.9061,38.7591,38.7787,38.5737,38.5246,38.7566,38.7308,37.6945,38.1494,37.162,36.838,36.3549,37.3886,37.0663,36.5391,34.8739,34.4603,33.7334,33.2457,33.6127,32.3594], 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"CCTGG":79732, "CCCAA":102491, "CCCAT":64331, "CCCAC":99896, "CCCAG":79410, "CCCTA":32943, "CCCTT":65384, "CCCTC":94561, "CCCTG":68255, "CCCCA":105043, "CCCCT":74541, "CCCCC":90502, "CCCCG":72724, "CCCGA":55104, "CCCGT":42181, "CCCGC":88593, "CCCGG":66465, "CCGAA":63624, "CCGAT":52781, "CCGAC":57008, "CCGAG":62472, "CCGTA":35045, "CCGTT":48601, "CCGTC":56805, "CCGTG":44957, "CCGCA":63265, "CCGCT":60672, "CCGCC":134887, "CCGCG":71293, "CCGGA":64403, "CCGGT":57345, "CCGGC":87039, "CCGGG":64258, "CGAAA":65545, "CGAAT":48223, "CGAAC":47951, "CGAAG":66429, "CGATA":38058, "CGATT":55559, "CGATC":54353, "CGATG":65056, "CGACA":44625, "CGACT":38146, "CGACC":67028, "CGACG":63379, "CGAGA":56498, "CGAGT":33004, "CGAGC":54495, "CGAGG":65857, "CGTAA":33028, "CGTAT":23348, "CGTAC":24573, "CGTAG":35672, "CGTTA":23581, "CGTTT":49095, "CGTTC":48834, "CGTTG":52756, "CGTCA":41653, "CGTCT":41747, "CGTCC":51770, "CGTCG":60886, "CGTGA":45281, "CGTGT":27480, "CGTGC":35914, "CGTGG":50852, "CGCAA":51686, "CGCAT":37433, "CGCAC":45212, "CGCAG":51007, "CGCTA":20500, "CGCTT":50250, "CGCTC":49751, "CGCTG":61193, "CGCCA":81557, "CGCCT":73585, "CGCCC":90682, "CGCCG":108308, "CGCGA":44333, "CGCGT":33793, "CGCGC":62406, "CGCGG":70468, "CGGAA":65272, "CGGAT":51068, "CGGAC":37418, "CGGAG":62042, "CGGTA":34877, "CGGTT":54975, "CGGTC":55458, "CGGTG":71144, "CGGCA":72545, "CGGCT":72759, "CGGCC":75753, "CGGCG":104188, "CGGGA":56179, "CGGGT":51262, "CGGGC":60070, "CGGGG":64954, "GAAAA":115327, "GAAAT":84392, "GAAAC":75296, "GAAAG":76035, "GAATA":51429, "GAATT":68194, "GAATC":60727, "GAATG":51964, "GAACA":61215, "GAACT":54297, "GAACC":66568, "GAACG":49250, "GAAGA":109117, "GAAGT":58510, "GAAGC":88833, "GAAGG":88174, "GATAA":54424, "GATAT":49706, "GATAC":32522, "GATAG":38578, "GATTA":40512, "GATTT":89459, "GATTC":62148, "GATTG":63255, "GATCA":59092, "GATCT":61388, "GATCC":55738, "GATCG":51665, "GATGA":92601, "GATGT":49274, "GATGC":54804, "GATGG":80109, "GACAA":61453, "GACAT":41864, "GACAC":33943, "GACAG":38211, "GACTA":22919, "GACTT":53650, "GACTC":30768, "GACTG":38692, "GACCA":65499, "GACCT":52345, "GACCC":59392, "GACCG":57083, "GACGA":65833, "GACGT":30872, "GACGC":44798, "GACGG":54623, "GAGAA":89269, "GAGAT":72497, "GAGAC":59006, "GAGAG":64545, "GAGTA":26639, "GAGTT":48402, "GAGTC":28747, "GAGTG":31145, "GAGCA":67228, "GAGCT":44640, "GAGCC":57312, "GAGCG":45690, "GAGGA":130910, "GAGGT":55912, "GAGGC":67164, "GAGGG":72623, "GTAAA":39190, "GTAAT":33921, "GTAAC":30493, "GTAAG":23651, "GTATA":18972, "GTATT":37996, "GTATC":30411, "GTATG":33361, "GTACA":30618, "GTACT":27699, "GTACC":31932, "GTACG":23896, "GTAGA":44284, "GTAGT":32048, "GTAGC":40964, "GTAGG":32689, "GTTAA":25734, "GTTAT":31254, "GTTAC":31752, "GTTAG":22906, "GTTTA":39355, "GTTTT":89543, "GTTTC":75233, "GTTTG":78680, "GTTCA":55058, "GTTCT":59796, "GTTCC":69308, "GTTCG":46058, "GTTGA":68053, "GTTGT":76288, "GTTGC":57751, "GTTGG":95148, "GTCAA":48071, "GTCAT":42637, "GTCAC":35625, "GTCAG":34803, "GTCTA":26706, "GTCTT":53495, "GTCTC":56329, "GTCTG":43412, "GTCCA":58226, "GTCCT":50112, "GTCCC":46137, "GTCCG":35724, "GTCGA":52444, "GTCGT":49097, "GTCGC":48466, "GTCGG":51307, "GTGAA":72273, "GTGAT":51342, "GTGAC":34687, "GTGAG":41909, "GTGTA":20663, "GTGTT":50313, "GTGTC":30248, "GTGTG":41570, "GTGCA":35879, "GTGCT":49590, "GTGCC":44232, "GTGCG":39434, "GTGGA":64525, "GTGGT":84476, "GTGGC":62346, "GTGGG":77188, "GCAAA":64274, "GCAAT":52748, "GCAAC":58507, "GCAAG":61471, "GCATA":34227, "GCATT":52124, "GCATC":53596, "GCATG":43491, "GCACA":42012, "GCACT":28305, "GCACC":73517, "GCACG":37337, "GCAGA":60768, "GCAGT":43310, "GCAGC":93910, "GCAGG":107743, "GCTAA":24410, "GCTAT":30438, "GCTAC":41181, "GCTAG":23521, "GCTTA":30482, "GCTTT":71777, "GCTTC":92506, "GCTTG":81002, "GCTCA":49140, "GCTCT":46008, "GCTCC":71535, "GCTCG":53561, "GCTGA":67522, "GCTGT":53823, "GCTGC":91812, "GCTGG":105873, "GCCAA":82687, "GCCAT":56386, "GCCAC":68226, "GCCAG":73880, "GCCTA":25837, "GCCTT":61427, "GCCTC":70575, "GCCTG":76059, "GCCCA":77869, "GCCCT":65270, "GCCCC":74275, "GCCCG":63083, "GCCGA":80820, "GCCGT":61576, "GCCGC":102975, "GCCGG":84815, "GCGAA":53307, "GCGAT":55848, "GCGAC":50731, "GCGAG":49200, "GCGTA":22352, "GCGTT":45144, "GCGTC":42479, "GCGTG":41777, "GCGCA":47430, "GCGCT":45652, "GCGCC":73243, "GCGCG":59642, "GCGGA":63024, "GCGGT":69825, "GCGGC":98375, "GCGGG":77964, "GGAAA":92698, "GGAAT":70982, "GGAAC":68339, "GGAAG":86479, "GGATA":51699, "GGATT":77820, "GGATC":54432, "GGATG":72652, "GGACA":51791, "GGACT":45003, "GGACC":46162, "GGACG":50093, "GGAGA":110047, "GGAGT":44526, "GGAGC":68486, "GGAGG":135049, "GGTAA":36652, "GGTAT":37390, "GGTAC":32404, "GGTAG":43244, "GGTTA":32003, "GGTTT":94315, "GGTTC":63232, "GGTTG":103115, "GGTCA":52715, "GGTCT":61089, "GGTCC":43314, "GGTCG":58833, "GGTGA":80432, "GGTGT":60522, "GGTGC":66544, "GGTGG":128435, "GGCAA":72060, "GGCAT":57734, "GGCAC":45873, "GGCAG":78615, "GGCTA":34357, "GGCTT":85273, "GGCTC":56806, "GGCTG":87726, "GGCCA":63895, "GGCCT":54649, "GGCCC":50719, "GGCCG":74790, "GGCGA":86780, "GGCGT":54456, "GGCGC":70827, "GGCGG":121101, "GGGAA":65410, "GGGAT":65172, "GGGAC":45735, "GGGAG":80118, "GGGTA":31442, "GGGTT":86069, "GGGTC":52467, "GGGTG":79540, "GGGCA":67832, "GGGCT":62741, "GGGCC":48902, "GGGCG":79781, "GGGGA":74440, "GGGGT":73142, "GGGGC":66235, "GGGGG":68579 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-30C_S31_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-30C_S31_R2_001.fastq.gz -o AM-AL-30C.trim.R1.fastq.gz -O AM-AL-30C.trim.R2.fastq.gz -m --merged_out AM-AL-30C.trim.merged.fastq.gz " }