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"CTCGC":50581, "CTCGG":52435, "CTGAA":280207, "CTGAT":48375, "CTGAC":36150, "CTGAG":48493, "CTGTA":28516, "CTGTT":66294, "CTGTC":38071, "CTGTG":37949, "CTGCA":63619, "CTGCT":106681, "CTGCC":80328, "CTGCG":50160, "CTGGA":76330, "CTGGT":72839, "CTGGC":69020, "CTGGG":73346, "CCAAA":108987, "CCAAT":54135, "CCAAC":103079, "CCAAG":86946, "CCATA":45120, "CCATT":54666, "CCATC":77428, "CCATG":52437, "CCACA":81314, "CCACT":39881, "CCACC":151007, "CCACG":52436, "CCAGA":141509, "CCAGT":135499, "CCAGC":103261, "CCAGG":71041, "CCTAA":32721, "CCTAT":28077, "CCTAC":35114, "CCTAG":34757, "CCTTA":30786, "CCTTT":78304, "CCTTC":93347, "CCTTG":73092, "CCTCA":70809, "CCTCT":67023, "CCTCC":150798, "CCTCG":65869, "CCTGA":60581, "CCTGT":56167, "CCTGC":107921, "CCTGG":71640, "CCCAA":101552, "CCCAT":58044, "CCCAC":96142, "CCCAG":94204, "CCCTA":36901, "CCCTT":62274, "CCCTC":91513, "CCCTG":63697, "CCCCA":107709, "CCCCT":72552, "CCCCC":96962, "CCCCG":69162, "CCCGA":54807, "CCCGT":41155, "CCCGC":85271, 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"CGGAT":45113, "CGGAC":34458, "CGGAG":64309, "CGGTA":36121, "CGGTT":49138, "CGGTC":50666, "CGGTG":65689, "CGGCA":70548, "CGGCT":67203, "CGGCC":70122, "CGGCG":96752, "CGGGA":52573, "CGGGT":47251, "CGGGC":55134, "CGGGG":59157, "GAAAA":107127, "GAAAT":72470, "GAAAC":66513, "GAAAG":81362, "GAATA":48035, "GAATT":57922, "GAATC":51287, "GAATG":44222, "GAACA":61155, "GAACT":220297, "GAACC":62234, "GAACG":44329, "GAAGA":694379, "GAAGT":51786, "GAAGC":77964, "GAAGG":79904, "GATAA":49920, "GATAT":41815, "GATAC":29156, "GATAG":49988, "GATTA":39186, "GATTT":75571, "GATTC":53142, "GATTG":56837, "GATCA":57421, "GATCT":54008, "GATCC":50187, "GATCG":714453, "GATGA":83907, "GATGT":44395, "GATGC":49536, "GATGG":71057, "GACAA":57370, "GACAT":37927, "GACAC":31308, "GACAG":48185, "GACTA":23745, "GACTT":47156, "GACTC":28115, "GACTG":34599, "GACCA":64199, "GACCT":48145, "GACCC":53135, "GACCG":50523, "GACGA":62487, "GACGT":28623, "GACGC":41669, "GACGG":48994, "GAGAA":83067, "GAGAT":196827, "GAGAC":50713, "GAGAG":67126, "GAGTA":26454, "GAGTT":43361, "GAGTC":25878, "GAGTG":27958, "GAGCA":531944, "GAGCT":41244, "GAGCC":50980, "GAGCG":41738, "GAGGA":117049, "GAGGT":52529, "GAGGC":59426, "GAGGG":65311, "GTAAA":34182, "GTAAT":28733, "GTAAC":27000, "GTAAG":29515, "GTATA":19329, "GTATT":33228, "GTATC":27796, "GTATG":28376, "GTACA":27311, "GTACT":23435, "GTACC":28124, "GTACG":22523, "GTAGA":90866, "GTAGT":27703, "GTAGC":34334, "GTAGG":29749, "GTTAA":24234, "GTTAT":27738, "GTTAC":28562, "GTTAG":35954, "GTTTA":37996, "GTTTT":82190, "GTTTC":68404, "GTTTG":72315, "GTTCA":51642, "GTTCT":54485, "GTTCC":63331, "GTTCG":43851, "GTTGA":63423, "GTTGT":70439, "GTTGC":53653, "GTTGG":87243, "GTCAA":46460, "GTCAT":39541, "GTCAC":80674, "GTCAG":46713, "GTCTA":27466, "GTCTT":50679, "GTCTC":50975, "GTCTG":302810, "GTCCA":53474, "GTCCT":47254, "GTCCC":43130, "GTCCG":33855, "GTCGA":50232, "GTCGT":45584, "GTCGC":45403, "GTCGG":47998, "GTGAA":64338, "GTGAT":47685, "GTGAC":31410, "GTGAG":46414, "GTGTA":21213, "GTGTT":48440, "GTGTC":28256, "GTGTG":41990, "GTGCA":35231, "GTGCT":46479, "GTGCC":40798, "GTGCG":36957, "GTGGA":60769, "GTGGT":80106, "GTGGC":56778, "GTGGG":74071, "GCAAA":61796, "GCAAT":45508, "GCAAC":53737, "GCAAG":67943, "GCATA":33349, "GCATT":45111, "GCATC":48481, "GCATG":37962, "GCACA":460009, "GCACT":26252, "GCACC":68533, "GCACG":34653, "GCAGA":119208, "GCAGT":37592, "GCAGC":82583, "GCAGG":91969, "GCTAA":25056, "GCTAT":37506, "GCTAC":36936, "GCTAG":36063, "GCTTA":31467, "GCTTT":65213, "GCTTC":84622, "GCTTG":72718, "GCTCA":48422, "GCTCT":43721, "GCTCC":67677, "GCTCG":49380, "GCTGA":62429, "GCTGT":49808, "GCTGC":83566, "GCTGG":95383, "GCCAA":78342, "GCCAT":52471, "GCCAC":64177, "GCCAG":89591, "GCCTA":29884, "GCCTT":58858, "GCCTC":67298, "GCCTG":68451, "GCCCA":76990, "GCCCT":60540, "GCCCC":69809, "GCCCG":59817, "GCCGA":77099, "GCCGT":58513, "GCCGC":99073, "GCCGG":77845, "GCGAA":53357, "GCGAT":50923, "GCGAC":46667, "GCGAG":55002, "GCGTA":23246, "GCGTT":40039, "GCGTC":39321, "GCGTG":38811, "GCGCA":47645, "GCGCT":43599, "GCGCC":69407, "GCGCG":55163, "GCGGA":60349, "GCGGT":61951, "GCGGC":89462, "GCGGG":70559, "GGAAA":87232, "GGAAT":58237, "GGAAC":59091, "GGAAG":662360, "GGATA":48479, "GGATT":65355, "GGATC":47140, "GGATG":64944, "GGACA":49034, "GGACT":38343, "GGACC":40371, "GGACG":45449, "GGAGA":145743, "GGAGT":39213, "GGAGC":59580, "GGAGG":118277, "GGTAA":34754, "GGTAT":32507, "GGTAC":28429, "GGTAG":56377, "GGTTA":34091, "GGTTT":85510, "GGTTC":56391, "GGTTG":96063, "GGTCA":51910, "GGTCT":55428, "GGTCC":39184, "GGTCG":53638, "GGTGA":77851, "GGTGT":57825, "GGTGC":60426, "GGTGG":119823, "GGCAA":68321, "GGCAT":50502, "GGCAC":40893, "GGCAG":89992, "GGCTA":37047, "GGCTT":76494, "GGCTC":50876, "GGCTG":79067, "GGCCA":63590, "GGCCT":50771, "GGCCC":46392, "GGCCG":68707, "GGCGA":83765, "GGCGT":50660, "GGCGC":66321, "GGCGG":110094, "GGGAA":61954, "GGGAT":55854, "GGGAC":41082, "GGGAG":85514, "GGGTA":32446, "GGGTT":78677, "GGGTC":46545, "GGGTG":76203, "GGGCA":65727, "GGGCT":56571, "GGGCC":43992, "GGGCG":72344, "GGGGA":70541, "GGGGT":68526, "GGGGC":58676, "GGGGG":127280 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1163891, "total_bases": 70997351, "q20_bases": 68975356, "q30_bases": 65569906, "total_cycles": 61, "quality_curves": { "A":[39.408,39.1412,39.2029,38.9325,39.1262,39.1447,39.0718,39.1276,39.226,39.2198,39.1845,39.209,39.2496,39.2313,39.1716,39.1113,39.2332,39.1876,39.2553,39.1646,38.5703,39.1495,39.1817,39.2135,38.7487,39.1274,39.1564,38.5912,39.0592,38.3606,39.0896,39.1904,39.0811,39.1255,39.015,39.0755,39.0747,39.1209,39.0646,38.8483,38.6869,38.5272,38.8096,38.65,38.5936,38.8233,38.7736,38.0457,38.3553,37.46,37.2272,36.821,37.7185,37.4396,37.0329,35.6642,35.2831,34.7112,34.3778,34.6353,33.854], 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"CCTGG":63427, "CCCAA":88038, "CCCAT":52503, "CCCAC":85852, "CCCAG":64947, "CCCTA":28598, "CCCTT":56314, "CCCTC":81858, "CCCTG":57213, "CCCCA":89906, "CCCCT":64832, "CCCCC":78307, "CCCCG":61196, "CCCGA":45345, "CCCGT":36156, "CCCGC":74622, "CCCGG":52886, "CCGAA":53157, "CCGAT":42689, "CCGAC":46273, "CCGAG":48412, "CCGTA":27597, "CCGTT":40870, "CCGTC":49000, "CCGTG":36737, "CCGCA":52421, "CCGCT":51371, "CCGCC":114453, "CCGCG":56051, "CCGGA":49880, "CCGGT":47390, "CCGGC":69741, "CCGGG":50415, "CGAAA":54085, "CGAAT":40179, "CGAAC":40275, "CGAAG":54554, "CGATA":31114, "CGATT":44891, "CGATC":44129, "CGATG":52267, "CGACA":37633, "CGACT":32113, "CGACC":54264, "CGACG":49834, "CGAGA":45050, "CGAGT":26372, "CGAGC":43217, "CGAGG":52223, "CGTAA":25558, "CGTAT":19647, "CGTAC":18953, "CGTAG":27651, "CGTTA":18987, "CGTTT":41254, "CGTTC":40490, "CGTTG":42240, "CGTCA":35405, "CGTCT":36268, "CGTCC":43952, "CGTCG":49550, "CGTGA":35156, "CGTGT":23235, "CGTGC":29475, "CGTGG":41124, "CGCAA":41197, "CGCAT":30805, "CGCAC":37885, "CGCAG":40815, "CGCTA":17764, "CGCTT":42071, "CGCTC":42396, "CGCTG":49834, "CGCCA":68207, "CGCCT":62905, "CGCCC":76998, "CGCCG":89164, "CGCGA":35506, "CGCGT":27054, "CGCGC":50581, "CGCGG":54293, "CGGAA":50919, "CGGAT":40424, "CGGAC":29856, "CGGAG":47240, "CGGTA":28003, "CGGTT":44843, "CGGTC":45096, "CGGTG":57067, "CGGCA":56589, "CGGCT":59632, "CGGCC":60946, "CGGCG":82193, "CGGGA":43741, "CGGGT":42037, "CGGGC":47613, "CGGGG":50509, "GAAAA":94647, "GAAAT":67156, "GAAAC":61353, "GAAAG":61900, "GAATA":41369, "GAATT":54028, "GAATC":47211, "GAATG":40597, "GAACA":50465, "GAACT":43500, "GAACC":55533, "GAACG":39196, "GAAGA":90975, "GAAGT":46842, "GAAGC":69739, "GAAGG":70758, "GATAA":43419, "GATAT":38482, "GATAC":26568, "GATAG":30845, "GATTA":33017, "GATTT":70229, "GATTC":48779, "GATTG":50998, "GATCA":47045, "GATCT":48832, "GATCC":44421, "GATCG":41151, "GATGA":73084, "GATGT":40351, "GATGC":44149, "GATGG":63785, "GACAA":49821, "GACAT":34020, "GACAC":27659, "GACAG":30679, "GACTA":18261, "GACTT":42976, "GACTC":25035, "GACTG":30069, "GACCA":53390, "GACCT":42603, "GACCC":47461, "GACCG":44514, "GACGA":53152, "GACGT":24813, "GACGC":36200, "GACGG":43048, "GAGAA":71800, "GAGAT":55480, "GAGAC":46049, "GAGAG":50745, "GAGTA":21541, "GAGTT":39417, "GAGTC":23224, "GAGTG":25209, "GAGCA":52346, "GAGCT":36179, "GAGCC":45149, "GAGCG":35829, "GAGGA":100403, "GAGGT":45588, "GAGGC":51982, "GAGGG":56933, "GTAAA":30570, "GTAAT":26420, "GTAAC":23599, "GTAAG":18121, "GTATA":15895, "GTATT":30768, "GTATC":25142, "GTATG":26217, "GTACA":23296, "GTACT":21360, "GTACC":25204, "GTACG":19510, "GTAGA":34724, "GTAGT":25367, "GTAGC":30672, "GTAGG":26080, "GTTAA":20771, "GTTAT":25744, "GTTAC":26424, "GTTAG":18716, "GTTTA":31307, "GTTTT":76081, "GTTTC":62468, "GTTTG":66493, "GTTCA":44197, "GTTCT":49374, "GTTCC":57255, "GTTCG":38716, "GTTGA":55419, "GTTGT":64160, "GTTGC":48204, "GTTGG":80073, "GTCAA":39698, "GTCAT":35563, "GTCAC":29915, "GTCAG":28772, "GTCTA":21173, "GTCTT":45512, "GTCTC":47696, "GTCTG":36378, "GTCCA":45173, "GTCCT":42487, "GTCCC":39272, "GTCCG":29553, "GTCGA":41429, "GTCGT":39792, "GTCGC":39715, "GTCGG":41477, "GTGAA":55521, "GTGAT":41638, "GTGAC":28018, "GTGAG":33358, "GTGTA":16784, "GTGTT":44053, "GTGTC":25203, "GTGTG":37493, "GTGCA":28718, "GTGCT":41003, "GTGCC":35928, "GTGCG":31954, "GTGGA":51303, "GTGGT":72388, "GTGGC":49956, "GTGGG":64295, "GCAAA":52427, "GCAAT":41690, "GCAAC":47882, "GCAAG":49432, "GCATA":27346, "GCATT":41478, "GCATC":43244, "GCATG":34118, "GCACA":34750, "GCACT":23440, "GCACC":60071, "GCACG":29898, "GCAGA":49429, "GCAGT":34159, "GCAGC":74307, "GCAGG":81434, "GCTAA":20338, "GCTAT":25985, "GCTAC":33162, "GCTAG":18223, "GCTTA":24724, "GCTTT":59803, "GCTTC":76847, "GCTTG":66015, "GCTCA":40180, "GCTCT":38725, "GCTCC":60724, "GCTCG":43376, "GCTGA":53291, "GCTGT":43991, "GCTGC":74293, "GCTGG":84477, "GCCAA":66483, "GCCAT":46762, "GCCAC":56894, "GCCAG":58961, "GCCTA":22159, "GCCTT":52889, "GCCTC":60619, "GCCTG":60388, "GCCCA":62874, "GCCCT":54331, "GCCCC":61912, "GCCCG":51520, "GCCGA":63950, "GCCGT":51044, "GCCGC":85382, "GCCGG":66467, "GCGAA":43643, "GCGAT":44280, "GCGAC":40422, "GCGAG":39392, "GCGTA":17798, "GCGTT":35848, "GCGTC":34131, "GCGTG":33768, "GCGCA":37287, "GCGCT":37260, "GCGCC":60067, "GCGCG":47218, "GCGGA":48997, "GCGGT":55340, "GCGGC":77150, "GCGGG":61089, "GGAAA":74161, "GGAAT":54117, "GGAAC":53109, "GGAAG":68364, "GGATA":39826, "GGATT":60030, "GGATC":42450, "GGATG":58198, "GGACA":39822, "GGACT":33585, "GGACC":35908, "GGACG":39177, "GGAGA":85086, "GGAGT":35448, "GGAGC":52714, "GGAGG":102997, "GGTAA":28215, "GGTAT":29798, "GGTAC":25373, "GGTAG":33216, "GGTTA":26150, "GGTTT":79167, "GGTTC":51445, "GGTTG":87510, "GGTCA":41928, "GGTCT":50194, "GGTCC":35070, "GGTCG":46772, "GGTGA":64278, "GGTGT":52360, "GGTGC":52823, "GGTGG":106193, "GGCAA":57105, "GGCAT":45484, "GGCAC":35938, "GGCAG":61145, "GGCTA":28621, "GGCTT":69405, "GGCTC":45675, "GGCTG":70005, "GGCCA":50477, "GGCCT":44361, "GGCCC":40405, "GGCCG":58372, "GGCGA":68384, "GGCGT":43799, "GGCGC":56073, "GGCGG":95032, "GGGAA":51770, "GGGAT":50540, "GGGAC":35160, "GGGAG":62361, "GGGTA":25113, "GGGTT":71989, "GGGTC":41747, "GGGTG":66623, "GGGCA":53137, "GGGCT":50591, "GGGCC":38028, "GGGCG":61781, "GGGGA":58182, "GGGGT":60298, "GGGGC":51145, "GGGGG":54339 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-30B_S30_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-30B_S30_R2_001.fastq.gz -o AM-AL-30B.trim.R1.fastq.gz -O AM-AL-30B.trim.R2.fastq.gz -m --merged_out AM-AL-30B.trim.merged.fastq.gz " }