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"TTCTC":84382, "TTCTG":74725, "TTCCA":78973, "TTCCT":100934, "TTCCC":69460, "TTCCG":67014, "TTCGA":57091, "TTCGT":53797, "TTCGC":63364, "TTCGG":68284, "TTGAA":72588, "TTGAT":74015, "TTGAC":49876, "TTGAG":67978, "TTGTA":37621, "TTGTT":85564, "TTGTC":58082, "TTGTG":57449, "TTGCA":47206, "TTGCT":70399, "TTGCC":82434, "TTGCG":52120, "TTGGA":65991, "TTGGT":120675, "TTGGC":89642, "TTGGG":87837, "TCAAA":64183, "TCAAT":66357, "TCAAC":72209, "TCAAG":71930, "TCATA":32394, "TCATT":49593, "TCATC":86083, "TCATG":53046, "TCACA":36655, "TCACT":32373, "TCACC":128112, "TCACG":46021, "TCAGA":85156, "TCAGT":36256, "TCAGC":73070, "TCAGG":65921, "TCTAA":25817, "TCTAT":36012, "TCTAC":42389, "TCTAG":22842, "TCTTA":26017, "TCTTT":83520, "TCTTC":122372, "TCTTG":67814, "TCTCA":43373, "TCTCT":61427, "TCTCC":93069, "TCTCG":53333, "TCTGA":228957, "TCTGT":39224, "TCTGC":68883, "TCTGG":87796, "TCCAA":66813, "TCCAT":61834, "TCCAC":68852, "TCCAG":188398, "TCCTA":28973, "TCCTT":81486, "TCCTC":114022, "TCCTG":106241, 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"CTCGC":55883, "CTCGG":62540, "CTGAA":238217, "CTGAT":59931, "CTGAC":48539, "CTGAG":55504, "CTGTA":30174, "CTGTT":71920, "CTGTC":45668, "CTGTG":47393, "CTGCA":73596, "CTGCT":108261, "CTGCC":92762, "CTGCG":67191, "CTGGA":92551, "CTGGT":89502, "CTGGC":98914, "CTGGG":95757, "CCAAA":100398, "CCAAT":60186, "CCAAC":149156, "CCAAG":91248, "CCATA":41950, "CCATT":55387, "CCATC":87144, "CCATG":65327, "CCACA":83121, "CCACT":46287, "CCACC":155586, "CCACG":62395, "CCAGA":137970, "CCAGT":135755, "CCAGC":141372, "CCAGG":91750, "CCTAA":27685, "CCTAT":31308, "CCTAC":40142, "CCTAG":27906, "CCTTA":28454, "CCTTT":71343, "CCTTC":97758, "CCTTG":83374, "CCTCA":68308, "CCTCT":62512, "CCTCC":119738, "CCTCG":70307, "CCTGA":71897, "CCTGT":63574, "CCTGC":123717, "CCTGG":91865, "CCCAA":105126, "CCCAT":63428, "CCCAC":98787, "CCCAG":101822, "CCCTA":34886, "CCCTT":61182, "CCCTC":72321, "CCCTG":74342, "CCCCA":101239, "CCCCT":65422, "CCCCC":76260, "CCCCG":70215, "CCCGA":63116, "CCCGT":44823, "CCCGC":87877, 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"CGGAT":50417, "CGGAC":40689, "CGGAG":69545, "CGGTA":39567, "CGGTT":59085, "CGGTC":61605, "CGGTG":77840, "CGGCA":93079, "CGGCT":82306, "CGGCC":88809, "CGGCG":119512, "CGGGA":60818, "CGGGT":58127, "CGGGC":69867, "CGGGG":66311, "GAAAA":98931, "GAAAT":69490, "GAAAC":64234, "GAAAG":79525, "GAATA":42769, "GAATT":51647, "GAATC":53371, "GAATG":48554, "GAACA":71507, "GAACT":191626, "GAACC":67190, "GAACG":49996, "GAAGA":563331, "GAAGT":53657, "GAAGC":86231, "GAAGG":90536, "GATAA":49713, "GATAT":44248, "GATAC":33976, "GATAG":48259, "GATTA":37029, "GATTT":70321, "GATTC":55477, "GATTG":58969, "GATCA":72702, "GATCT":57228, "GATCC":56082, "GATCG":592010, "GATGA":93032, "GATGT":52419, "GATGC":63232, "GATGG":83209, "GACAA":60302, "GACAT":42975, "GACAC":36299, "GACAG":57049, "GACTA":23982, "GACTT":48433, "GACTC":30126, "GACTG":40307, "GACCA":77522, "GACCT":52443, "GACCC":57736, "GACCG":61256, "GACGA":69302, "GACGT":35067, "GACGC":50694, "GACGG":55667, "GAGAA":82983, "GAGAT":213677, "GAGAC":50164, "GAGAG":65298, "GAGTA":25893, "GAGTT":45211, "GAGTC":28573, "GAGTG":30804, "GAGCA":440638, "GAGCT":46972, "GAGCC":57266, "GAGCG":51950, "GAGGA":110237, "GAGGT":57246, "GAGGC":65647, "GAGGG":63163, "GTAAA":32017, "GTAAT":29815, "GTAAC":28669, "GTAAG":28941, "GTATA":18518, "GTATT":35646, "GTATC":31777, "GTATG":28269, "GTACA":29351, "GTACT":24835, "GTACC":30176, "GTACG":26380, "GTAGA":70710, "GTAGT":29975, "GTAGC":38595, "GTAGG":36195, "GTTAA":23200, "GTTAT":30033, "GTTAC":30248, "GTTAG":31329, "GTTTA":33465, "GTTTT":77283, "GTTTC":64976, "GTTTG":76874, "GTTCA":57246, "GTTCT":57739, "GTTCC":68281, "GTTCG":54705, "GTTGA":71273, "GTTGT":70775, "GTTGC":66655, "GTTGG":128489, "GTCAA":50349, "GTCAT":44391, "GTCAC":84216, "GTCAG":61849, "GTCTA":25561, "GTCTT":72948, "GTCTC":48009, "GTCTG":254386, "GTCCA":58125, "GTCCT":52142, "GTCCC":43176, "GTCCG":40209, "GTCGA":62830, "GTCGT":51395, "GTCGC":56504, "GTCGG":64344, "GTGAA":62817, "GTGAT":54687, "GTGAC":34376, "GTGAG":51340, "GTGTA":22121, "GTGTT":53075, "GTGTC":32700, "GTGTG":43312, "GTGCA":41985, "GTGCT":53973, "GTGCC":50162, "GTGCG":44064, "GTGGA":66546, "GTGGT":86589, "GTGGC":68706, "GTGGG":82651, "GCAAA":66249, "GCAAT":49190, "GCAAC":67470, "GCAAG":72567, "GCATA":32345, "GCATT":50022, "GCATC":62738, "GCATG":48566, "GCACA":374445, "GCACT":31181, "GCACC":80898, "GCACG":44413, "GCAGA":127088, "GCAGT":44007, "GCAGC":94159, "GCAGG":112610, "GCTAA":24093, "GCTAT":34079, "GCTAC":41484, "GCTAG":29911, "GCTTA":31763, "GCTTT":69069, "GCTTC":90410, "GCTTG":77937, "GCTCA":58148, "GCTCT":47152, "GCTCC":69804, "GCTCG":61000, "GCTGA":76527, "GCTGT":64537, "GCTGC":96017, "GCTGG":132362, "GCCAA":91525, "GCCAT":64857, "GCCAC":74054, "GCCAG":116414, "GCCTA":31360, "GCCTT":68912, "GCCTC":67749, "GCCTG":92833, "GCCCA":89665, "GCCCT":65111, "GCCCC":70400, "GCCCG":71646, "GCCGA":97173, "GCCGT":70243, "GCCGC":111653, "GCCGG":100934, "GCGAA":63446, "GCGAT":62389, "GCGAC":58618, "GCGAG":64422, "GCGTA":27615, "GCGTT":47518, "GCGTC":49227, "GCGTG":48820, "GCGCA":67593, "GCGCT":62019, "GCGCC":89587, "GCGCG":70917, "GCGGA":65689, "GCGGT":71898, "GCGGC":106652, "GCGGG":81379, "GGAAA":83542, "GGAAT":58179, "GGAAC":64530, "GGAAG":544199, "GGATA":49153, "GGATT":64126, "GGATC":54326, "GGATG":75608, "GGACA":54924, "GGACT":38754, "GGACC":44202, "GGACG":51876, "GGAGA":153248, "GGAGT":41455, "GGAGC":64550, "GGAGG":107380, "GGTAA":37131, "GGTAT":36254, "GGTAC":30450, "GGTAG":58079, "GGTTA":36883, "GGTTT":87577, "GGTTC":63412, "GGTTG":137618, "GGTCA":65783, "GGTCT":58630, "GGTCC":44348, "GGTCG":68865, "GGTGA":86227, "GGTGT":64900, "GGTGC":71039, "GGTGG":127940, "GGCAA":81080, "GGCAT":63668, "GGCAC":51682, "GGCAG":108569, "GGCTA":41644, "GGCTT":83572, "GGCTC":58607, "GGCTG":108308, "GGCCA":84958, "GGCCT":64194, "GGCCC":55388, "GGCCG":86874, "GGCGA":101769, "GGCGT":62633, "GGCGC":89015, "GGCGG":119369, "GGGAA":66043, "GGGAT":61179, "GGGAC":43062, "GGGAG":87345, "GGGTA":37969, "GGGTT":88027, "GGGTC":54445, "GGGTG":84672, "GGGCA":79158, "GGGCT":66798, "GGGCC":54173, "GGGCG":80645, "GGGGA":73661, "GGGGT":72732, "GGGGC":64587, "GGGGG":168111 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1204397, "total_bases": 73468217, "q20_bases": 71518043, "q30_bases": 68061061, "total_cycles": 61, "quality_curves": { "A":[39.3977,39.3232,39.2022,39.0439,39.1157,39.1392,39.23,39.1605,39.1492,39.204,39.1798,39.1225,39.1839,39.183,39.1345,39.1238,39.2302,39.148,39.214,39.1262,38.463,39.1049,39.1871,39.1909,38.6064,39.1014,39.1489,38.4184,39.0301,38.095,39.0802,39.1751,39.0903,38.9972,38.9965,38.7936,39.0603,39.0947,39.0208,39.0418,38.6855,38.1028,38.7625,38.6066,38.572,38.741,38.7351,37.8511,38.3788,37.6891,37.4741,37.1535,37.9433,37.694,37.3173,36.2,35.8809,35.3643,35.1714,35.393,34.6045], 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"CTTGT":51752, "CTTGC":54084, "CTTGG":66725, "CTCAA":50201, "CTCAT":39692, "CTCAC":35907, "CTCAG":38136, "CTCTA":26018, "CTCTT":52410, "CTCTC":47446, "CTCTG":42574, "CTCCA":70454, "CTCCT":95244, "CTCCC":65742, "CTCCG":52333, "CTCGA":47654, "CTCGT":37931, "CTCGC":44907, "CTCGG":51583, "CTGAA":52814, "CTGAT":49497, "CTGAC":39268, "CTGAG":37483, "CTGTA":23693, "CTGTT":60503, "CTGTC":37630, "CTGTG":38479, "CTGCA":56834, "CTGCT":91547, "CTGCC":77453, "CTGCG":54435, "CTGGA":73470, "CTGGT":76031, "CTGGC":80012, "CTGGG":70646, "CCAAA":83874, "CCAAT":51996, "CCAAC":132081, "CCAAG":66708, "CCATA":33470, "CCATT":46991, "CCATC":72121, "CCATG":53387, "CCACA":67261, "CCACT":38249, "CCACC":131673, "CCACG":49763, "CCAGA":63895, "CCAGT":50583, "CCAGC":115540, "CCAGG":74605, "CCTAA":21643, "CCTAT":26007, "CCTAC":33039, "CCTAG":14812, "CCTTA":21137, "CCTTT":60764, "CCTTC":81072, "CCTTG":69816, "CCTCA":54643, "CCTCT":52519, "CCTCC":102466, "CCTCG":57839, "CCTGA":56364, "CCTGT":53692, "CCTGC":104397, "CCTGG":75749, "CCCAA":87275, "CCCAT":52902, "CCCAC":83753, "CCCAG":72877, "CCCTA":26561, "CCCTT":51220, "CCCTC":59981, "CCCTG":61584, "CCCCA":81246, "CCCCT":54344, "CCCCC":58494, "CCCCG":57438, "CCCGA":49289, "CCCGT":35822, "CCCGC":71443, "CCCGG":60681, "CCGAA":54893, "CCGAT":49850, "CCGAC":56794, "CCGAG":52474, "CCGTA":28345, "CCGTT":40161, "CCGTC":50673, "CCGTG":41146, "CCGCA":57025, "CCGCT":55543, "CCGCC":106085, "CCGCG":59606, "CCGGA":54310, "CCGGT":53873, "CCGGC":84396, "CCGGG":59499, "CGAAA":50954, "CGAAT":35448, "CGAAC":45045, "CGAAG":59645, "CGATA":33117, "CGATT":41660, "CGATC":50868, "CGATG":64751, "CGACA":44929, "CGACT":34579, "CGACC":63560, "CGACG":54682, "CGAGA":44777, "CGAGT":26804, "CGAGC":49417, "CGAGG":55137, "CGTAA":24595, "CGTAT":20806, "CGTAC":21024, "CGTAG":28047, "CGTTA":17884, "CGTTT":37745, "CGTTC":41857, "CGTTG":47404, "CGTCA":38500, "CGTCT":36407, "CGTCC":45135, "CGTCG":54050, "CGTGA":36170, "CGTGT":23965, "CGTGC":34266, "CGTGG":47060, "CGCAA":42303, "CGCAT":32738, "CGCAC":39705, "CGCAG":51702, "CGCTA":19146, "CGCTT":46521, "CGCTC":43758, "CGCTG":67400, "CGCCA":76054, "CGCCT":64194, "CGCCC":71779, "CGCCG":95625, "CGCGA":42565, "CGCGT":29529, "CGCGC":56557, "CGCGG":58666, "CGGAA":50899, "CGGAT":41464, "CGGAC":33026, "CGGAG":47723, "CGGTA":30040, "CGGTT":49559, "CGGTC":50811, "CGGTG":64130, "CGGCA":69220, "CGGCT":67631, "CGGCC":71314, "CGGCG":93530, "CGGGA":46787, "CGGGT":47779, "CGGGC":56095, "CGGGG":53538, "GAAAA":80374, "GAAAT":58444, "GAAAC":53549, "GAAAG":58886, "GAATA":35234, "GAATT":44288, "GAATC":45498, "GAATG":40830, "GAACA":54292, "GAACT":42456, "GAACC":54417, "GAACG":40441, "GAAGA":81999, "GAAGT":43904, "GAAGC":69790, "GAAGG":74542, "GATAA":40366, "GATAT":37582, "GATAC":28534, "GATAG":32645, "GATTA":30248, "GATTT":60182, "GATTC":46583, "GATTG":49234, "GATCA":54841, "GATCT":47649, "GATCC":45640, "GATCG":48257, "GATGA":73311, "GATGT":43402, "GATGC":51556, "GATGG":69323, "GACAA":48053, "GACAT":35319, "GACAC":29276, "GACAG":34916, "GACTA":18569, "GACTT":41151, "GACTC":24889, "GACTG":32419, "GACCA":59255, "GACCT":42344, "GACCC":47600, "GACCG":49247, "GACGA":53201, "GACGT":27976, "GACGC":40017, "GACGG":45088, "GAGAA":66511, "GAGAT":51591, "GAGAC":41285, "GAGAG":44799, "GAGTA":20359, "GAGTT":37639, "GAGTC":23535, "GAGTG":25601, "GAGCA":55704, "GAGCT":37318, "GAGCC":46370, "GAGCG":39754, "GAGGA":86877, "GAGGT":46453, "GAGGC":53034, "GAGGG":51366, "GTAAA":26585, "GTAAT":25069, "GTAAC":23254, "GTAAG":19394, "GTATA":14947, "GTATT":30578, "GTATC":26688, "GTATG":24061, "GTACA":22785, "GTACT":20641, "GTACC":24909, "GTACG":21452, "GTAGA":32239, "GTAGT":25708, "GTAGC":32259, "GTAGG":29861, "GTTAA":18801, "GTTAT":25376, "GTTAC":25561, "GTTAG":18901, "GTTTA":26381, "GTTTT":65351, "GTTTC":54380, "GTTTG":66466, "GTTCA":44892, "GTTCT":48032, "GTTCC":57520, "GTTCG":44207, "GTTGA":56282, "GTTGT":61192, "GTTGC":55613, "GTTGG":115071, "GTCAA":39598, "GTCAT":36436, "GTCAC":29373, "GTCAG":36802, "GTCTA":19116, "GTCTT":45250, "GTCTC":41980, "GTCTG":39911, "GTCCA":45713, "GTCCT":43612, "GTCCC":36115, "GTCCG":32191, "GTCGA":47640, "GTCGT":41446, "GTCGC":45315, "GTCGG":52182, "GTGAA":49563, "GTGAT":44377, "GTGAC":27665, "GTGAG":32819, "GTGTA":17239, "GTGTT":44767, "GTGTC":27016, "GTGTG":36707, "GTGCA":31622, "GTGCT":44238, "GTGCC":40444, "GTGCG":35711, "GTGGA":51351, "GTGGT":73975, "GTGGC":56746, "GTGGG":68904, "GCAAA":52237, "GCAAT":40532, "GCAAC":55247, "GCAAG":50817, "GCATA":25348, "GCATT":41964, "GCATC":50545, "GCATG":39753, "GCACA":36070, "GCACT":25004, "GCACC":65415, "GCACG":35155, "GCAGA":50823, "GCAGT":36483, "GCAGC":75725, "GCAGG":92065, "GCTAA":18314, "GCTAT":27187, "GCTAC":33810, "GCTAG":17338, "GCTTA":23687, "GCTTT":57743, "GCTTC":76132, "GCTTG":65755, "GCTCA":44521, "GCTCT":38480, "GCTCC":58365, "GCTCG":48845, "GCTGA":57710, "GCTGT":52189, "GCTGC":78098, "GCTGG":109951, "GCCAA":72243, "GCCAT":52322, "GCCAC":59952, "GCCAG":76966, "GCCTA":23104, "GCCTT":56104, "GCCTC":56448, "GCCTG":75794, "GCCCA":69536, "GCCCT":53469, "GCCCC":57728, "GCCCG":56796, "GCCGA":75420, "GCCGT":56191, "GCCGC":88119, "GCCGG":80251, "GCGAA":48443, "GCGAT":49318, "GCGAC":46739, "GCGAG":42277, "GCGTA":20993, "GCGTT":38337, "GCGTC":38902, "GCGTG":38792, "GCGCA":49405, "GCGCT":47888, "GCGCC":70904, "GCGCG":54823, "GCGGA":49791, "GCGGT":59675, "GCGGC":85230, "GCGGG":65466, "GGAAA":66182, "GGAAT":49729, "GGAAC":54076, "GGAAG":70698, "GGATA":38935, "GGATT":54523, "GGATC":45598, "GGATG":62854, "GGACA":40500, "GGACT":32252, "GGACC":36598, "GGACG":41271, "GGAGA":75769, "GGAGT":34389, "GGAGC":52981, "GGAGG":88805, "GGTAA":28597, "GGTAT":30577, "GGTAC":25160, "GGTAG":37928, "GGTTA":27721, "GGTTT":74585, "GGTTC":53302, "GGTTG":122704, "GGTCA":47461, "GGTCT":49100, "GGTCC":36520, "GGTCG":55914, "GGTGA":63686, "GGTGT":54792, "GGTGC":58645, "GGTGG":109047, "GGCAA":62381, "GGCAT":51947, "GGCAC":41831, "GGCAG":69415, "GGCTA":30998, "GGCTT":69632, "GGCTC":48298, "GGCTG":90480, "GGCCA":62317, "GGCCT":51729, "GGCCC":44462, "GGCCG":68009, "GGCGA":76174, "GGCGT":49906, "GGCGC":68665, "GGCGG":96500, "GGGAA":51858, "GGGAT":50996, "GGGAC":34957, "GGGAG":57632, "GGGTA":28722, "GGGTT":75722, "GGGTC":45606, "GGGTG":70438, "GGGCA":58748, "GGGCT":55093, "GGGCC":43503, "GGGCG":64089, "GGGGA":55497, "GGGGT":60275, "GGGGC":53139, "GGGGG":48691 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-29C_S28_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-29C_S28_R2_001.fastq.gz -o AM-AL-29C.trim.R1.fastq.gz -O AM-AL-29C.trim.R2.fastq.gz -m --merged_out AM-AL-29C.trim.merged.fastq.gz " }