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"GCGCA":44180, "GCGCT":39021, "GCGCC":59297, "GCGCG":45359, "GCGGA":42923, "GCGGT":49051, "GCGGC":69883, "GCGGG":53162, "GGAAA":53524, "GGAAT":39599, "GGAAC":44612, "GGAAG":399363, "GGATA":32672, "GGATT":43246, "GGATC":35350, "GGATG":49957, "GGACA":37245, "GGACT":26189, "GGACC":29658, "GGACG":33802, "GGAGA":107503, "GGAGT":27008, "GGAGC":41537, "GGAGG":72094, "GGTAA":24693, "GGTAT":23815, "GGTAC":20125, "GGTAG":40277, "GGTTA":23265, "GGTTT":56502, "GGTTC":41465, "GGTTG":90172, "GGTCA":43167, "GGTCT":38215, "GGTCC":29957, "GGTCG":44441, "GGTGA":58007, "GGTGT":43258, "GGTGC":48508, "GGTGG":87477, "GGCAA":51714, "GGCAT":42228, "GGCAC":33523, "GGCAG":73524, "GGCTA":27700, "GGCTT":55221, "GGCTC":37732, "GGCTG":70944, "GGCCA":55008, "GGCCT":41665, "GGCCC":36143, "GGCCG":56832, "GGCGA":65489, "GGCGT":38681, "GGCGC":57521, "GGCGG":78909, "GGGAA":42710, "GGGAT":40780, "GGGAC":28587, "GGGAG":57614, "GGGTA":24538, "GGGTT":57855, "GGGTC":35435, "GGGTG":57160, "GGGCA":53434, "GGGCT":44299, "GGGCC":35246, "GGGCG":52530, "GGGGA":48728, "GGGGT":48036, "GGGGC":43072, "GGGGG":72982 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 807468, "total_bases": 49255548, "q20_bases": 48021557, "q30_bases": 45912266, "total_cycles": 61, "quality_curves": { "A":[39.4958,39.2187,39.2778,39.178,39.2638,39.3603,39.2341,39.2718,39.343,39.3322,39.3087,39.3197,39.3562,39.345,39.2741,39.2515,39.3367,39.3031,39.3494,39.2643,38.6956,39.2622,39.2887,39.3265,38.8723,39.2372,39.2594,38.7411,39.1703,38.4923,39.2362,39.3055,39.2055,39.2702,39.1377,39.1707,39.17,38.9447,39.1544,38.9038,38.7535,38.8128,38.8992,38.7247,38.6536,38.8362,38.8222,38.1354,38.425,37.746,37.4677,37.166,37.9654,37.7464,37.2872,36.0942,35.7795,35.2165,34.9757,35.217,34.193], 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"GC":[0.558206,0.521316,0.582878,0.567691,0.569018,0.535983,0.529371,0.515426,0.523333,0.521652,0.523159,0.535637,0.530948,0.532376,0.54535,0.537287,0.539012,0.541887,0.533327,0.5334,0.543615,0.5381,0.535895,0.544349,0.538375,0.538125,0.541572,0.535568,0.535466,0.540905,0.532854,0.53396,0.541457,0.534946,0.533091,0.54249,0.534049,0.531844,0.545462,0.535335,0.532809,0.543749,0.536619,0.534574,0.545088,0.537641,0.535792,0.544082,0.538025,0.537784,0.547421,0.537324,0.536724,0.54778,0.540967,0.539145,0.549686,0.541851,0.537612,0.551072,0.541023,0.543684,0.550534,0.544555,0.546313,0.550908,0.546339,0.541539,0.556458,0.548346,0.547313,0.556522,0.551596,0.549454,0.563328,0.55304,0.548207,0.565844,0.55574,0.556381,0.572974,0.567685,0.559714,0.581049,0.578624,0.582322,0.599483,0.602983,0.590877,0.608174,0.660325] }, "kmer_count": { "AAAAA":58554, "AAAAT":40674, "AAAAC":44493, "AAAAG":40815, "AAATA":26790, "AAATT":33653, "AAATC":39232, "AAATG":33122, "AAACA":38825, "AAACT":27665, "AAACC":55191, 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"CTTGT":37361, "CTTGC":36836, "CTTGG":47581, "CTCAA":34744, "CTCAT":27370, "CTCAC":26016, "CTCAG":25723, "CTCTA":18421, "CTCTT":34129, "CTCTC":32450, "CTCTG":28993, "CTCCA":50738, "CTCCT":68098, "CTCCC":46956, "CTCCG":36345, "CTCGA":33334, "CTCGT":25892, "CTCGC":30576, "CTCGG":35296, "CTGAA":35088, "CTGAT":33947, "CTGAC":26620, "CTGAG":25468, "CTGTA":16708, "CTGTT":43242, "CTGTC":25706, "CTGTG":26417, "CTGCA":40855, "CTGCT":66251, "CTGCC":56044, "CTGCG":37108, "CTGGA":50591, "CTGGT":53037, "CTGGC":55104, "CTGGG":49953, "CCAAA":60977, "CCAAT":36490, "CCAAC":94783, "CCAAG":48295, "CCATA":23366, "CCATT":33700, "CCATC":51451, "CCATG":37563, "CCACA":48967, "CCACT":26806, "CCACC":100233, "CCACG":35300, "CCAGA":44212, "CCAGT":36558, "CCAGC":84190, "CCAGG":54085, "CCTAA":16133, "CCTAT":17627, "CCTAC":23967, "CCTAG":9900, "CCTTA":14215, "CCTTT":41140, "CCTTC":57285, "CCTTG":51439, "CCTCA":39676, "CCTCT":35889, "CCTCC":75048, "CCTCG":39668, "CCTGA":39156, "CCTGT":38771, "CCTGC":78404, "CCTGG":53652, "CCCAA":63958, "CCCAT":38598, "CCCAC":62612, "CCCAG":53072, "CCCTA":19761, "CCCTT":36845, "CCCTC":43027, "CCCTG":44026, "CCCCA":60617, "CCCCT":39250, "CCCCC":42907, "CCCCG":41538, "CCCGA":34194, "CCCGT":25228, "CCCGC":51376, "CCCGG":43076, "CCGAA":38435, "CCGAT":35527, "CCGAC":39189, "CCGAG":37616, "CCGTA":21301, "CCGTT":28351, "CCGTC":34959, "CCGTG":28940, "CCGCA":41129, "CCGCT":38394, "CCGCC":77345, "CCGCG":43385, "CCGGA":38293, "CCGGT":37397, "CCGGC":59772, "CCGGG":41854, "CGAAA":34429, "CGAAT":25062, "CGAAC":31543, "CGAAG":40195, "CGATA":23079, "CGATT":28948, "CGATC":34764, "CGATG":45181, "CGACA":30766, "CGACT":24883, "CGACC":44811, "CGACG":37652, "CGAGA":31480, "CGAGT":18456, "CGAGC":34192, "CGAGG":36889, "CGTAA":18527, "CGTAT":14808, "CGTAC":15504, "CGTAG":20133, "CGTTA":12351, "CGTTT":24727, "CGTTC":29107, "CGTTG":32424, "CGTCA":25766, "CGTCT":24318, "CGTCC":31663, "CGTCG":36855, "CGTGA":26278, "CGTGT":16106, "CGTGC":23328, "CGTGG":32316, "CGCAA":29072, "CGCAT":23211, "CGCAC":28366, "CGCAG":35774, "CGCTA":12911, "CGCTT":31441, "CGCTC":29012, "CGCTG":46055, "CGCCA":54596, "CGCCT":45672, "CGCCC":52010, "CGCCG":66570, "CGCGA":28656, "CGCGT":20183, "CGCGC":38993, "CGCGG":42720, "CGGAA":36848, "CGGAT":28531, "CGGAC":22755, "CGGAG":32967, "CGGTA":21253, "CGGTT":33754, "CGGTC":35382, "CGGTG":45215, "CGGCA":48513, "CGGCT":47817, "CGGCC":50192, "CGGCG":64738, "CGGGA":32284, "CGGGT":32959, "CGGGC":38628, "CGGGG":37331, "GAAAA":52370, "GAAAT":39907, "GAAAC":36523, "GAAAG":38302, "GAATA":24063, "GAATT":31729, "GAATC":32653, "GAATG":28193, "GAACA":37642, "GAACT":29157, "GAACC":38532, "GAACG":28523, "GAAGA":55129, "GAAGT":30007, "GAAGC":49362, "GAAGG":51068, "GATAA":28132, "GATAT":26061, "GATAC":19755, "GATAG":22166, "GATTA":21228, "GATTT":42593, "GATTC":33588, "GATTG":33953, "GATCA":38323, "GATCT":34174, "GATCC":32107, "GATCG":32894, "GATGA":52378, "GATGT":29546, "GATGC":36134, "GATGG":49050, "GACAA":32671, "GACAT":24719, "GACAC":20853, "GACAG":24299, "GACTA":12307, "GACTT":30127, "GACTC":16520, "GACTG":22628, "GACCA":41301, "GACCT":29210, "GACCC":33282, "GACCG":34949, "GACGA":36359, "GACGT":18569, "GACGC":27396, "GACGG":30950, "GAGAA":43738, "GAGAT":37831, "GAGAC":28968, "GAGAG":30139, "GAGTA":13945, "GAGTT":25393, "GAGTC":15934, "GAGTG":17557, "GAGCA":38719, "GAGCT":25245, "GAGCC":32240, "GAGCG":27100, "GAGGA":61883, "GAGGT":31386, "GAGGC":35332, "GAGGG":34763, "GTAAA":18821, "GTAAT":18536, "GTAAC":17116, "GTAAG":13817, "GTATA":10356, "GTATT":21232, "GTATC":18506, "GTATG":17299, "GTACA":16782, "GTACT":15481, "GTACC":17670, "GTACG":15306, "GTAGA":22852, "GTAGT":18556, "GTAGC":23857, "GTAGG":20403, "GTTAA":12284, "GTTAT":16770, "GTTAC":19077, "GTTAG":13267, "GTTTA":18749, "GTTTT":42897, "GTTTC":36380, "GTTTG":44783, "GTTCA":30789, "GTTCT":32204, "GTTCC":41998, "GTTCG":30580, "GTTGA":39057, "GTTGT":42356, "GTTGC":37855, "GTTGG":76491, "GTCAA":26435, "GTCAT":24529, "GTCAC":20123, "GTCAG":24772, "GTCTA":13889, "GTCTT":29667, "GTCTC":29652, "GTCTG":26547, "GTCCA":33254, "GTCCT":30370, "GTCCC":26163, "GTCCG":22653, "GTCGA":33725, "GTCGT":28828, "GTCGC":30526, "GTCGG":34657, "GTGAA":35851, "GTGAT":31214, "GTGAC":19076, "GTGAG":23244, "GTGTA":11597, "GTGTT":30971, "GTGTC":18399, "GTGTG":24694, "GTGCA":22496, "GTGCT":30883, "GTGCC":28865, "GTGCG":24217, "GTGGA":35907, "GTGGT":51934, "GTGGC":39129, "GTGGG":48179, "GCAAA":34263, "GCAAT":27867, "GCAAC":37983, "GCAAG":34430, "GCATA":18174, "GCATT":30476, "GCATC":35239, "GCATG":28513, "GCACA":25107, "GCACT":17296, "GCACC":48692, "GCACG":23968, "GCAGA":33651, "GCAGT":25504, "GCAGC":55583, "GCAGG":67650, "GCTAA":12189, "GCTAT":18032, "GCTAC":25685, "GCTAG":12934, "GCTTA":16930, "GCTTT":38598, "GCTTC":53287, "GCTTG":46434, "GCTCA":30026, "GCTCT":25808, "GCTCC":40984, "GCTCG":33723, "GCTGA":39033, "GCTGT":36570, "GCTGC":55760, "GCTGG":77115, "GCCAA":51457, "GCCAT":35706, "GCCAC":43400, "GCCAG":53870, "GCCTA":15487, "GCCTT":37842, "GCCTC":39255, "GCCTG":54849, "GCCCA":50501, "GCCCT":39143, "GCCCC":42061, "GCCCG":39873, "GCCGA":53004, "GCCGT":39117, "GCCGC":63582, "GCCGG":56786, "GCGAA":32367, "GCGAT":32843, "GCGAC":31282, "GCGAG":28380, "GCGTA":14228, "GCGTT":25206, "GCGTC":26137, "GCGTG":26262, "GCGCA":34418, "GCGCT":32350, "GCGCC":50097, "GCGCG":37760, "GCGGA":34091, "GCGGT":42904, "GCGGC":59518, "GCGGG":45670, "GGAAA":44411, "GGAAT":35927, "GGAAC":39511, "GGAAG":49422, "GGATA":27338, "GGATT":38695, "GGATC":31156, "GGATG":43975, "GGACA":29122, "GGACT":23012, "GGACC":26084, "GGACG":28591, "GGAGA":53032, "GGAGT":23994, "GGAGC":36122, "GGAGG":63013, "GGTAA":20481, "GGTAT":21206, "GGTAC":17637, "GGTAG":27250, "GGTTA":18296, "GGTTT":50359, "GGTTC":36922, "GGTTG":82591, "GGTCA":32803, "GGTCT":33823, "GGTCC":25881, "GGTCG":38262, "GGTGA":45064, "GGTGT":38540, "GGTGC":42553, "GGTGG":78185, "GGCAA":41658, "GGCAT":36634, "GGCAC":29094, "GGCAG":49406, "GGCTA":21802, "GGCTT":48766, "GGCTC":33258, "GGCTG":62419, "GGCCA":42766, "GGCCT":35886, "GGCCC":30886, "GGCCG":47491, "GGCGA":51622, "GGCGT":32948, "GGCGC":47563, "GGCGG":67615, "GGGAA":35270, "GGGAT":35906, "GGGAC":24869, "GGGAG":39379, "GGGTA":19616, "GGGTT":51867, "GGGTC":31217, "GGGTG":50140, "GGGCA":41600, "GGGCT":39010, "GGGCC":30265, "GGGCG":44886, "GGGGA":38650, "GGGGT":41876, "GGGGC":37729, "GGGGG":33632 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-29B_S27_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-29B_S27_R2_001.fastq.gz -o AM-AL-29B.trim.R1.fastq.gz -O AM-AL-29B.trim.R2.fastq.gz -m --merged_out AM-AL-29B.trim.merged.fastq.gz " }