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"GAGTT":39485, "GAGTC":25185, "GAGTG":26222, "GAGCA":277832, "GAGCT":41992, "GAGCC":49888, "GAGCG":43742, "GAGGA":97699, "GAGGT":51367, "GAGGC":61690, "GAGGG":56573, "GTAAA":26120, "GTAAT":22518, "GTAAC":22423, "GTAAG":22087, "GTATA":15447, "GTATT":28129, "GTATC":25173, "GTATG":23344, "GTACA":20841, "GTACT":19109, "GTACC":23639, "GTACG":20119, "GTAGA":54187, "GTAGT":24025, "GTAGC":29615, "GTAGG":29667, "GTTAA":19625, "GTTAT":25905, "GTTAC":24659, "GTTAG":23516, "GTTTA":26607, "GTTTT":65322, "GTTTC":53366, "GTTTG":59257, "GTTCA":46739, "GTTCT":50416, "GTTCC":55707, "GTTCG":44314, "GTTGA":55756, "GTTGT":52042, "GTTGC":52151, "GTTGG":76766, "GTCAA":41424, "GTCAT":35820, "GTCAC":62217, "GTCAG":44834, "GTCTA":21658, "GTCTT":51201, "GTCTC":41480, "GTCTG":160498, "GTCCA":44897, "GTCCT":41431, "GTCCC":35880, "GTCCG":31374, "GTCGA":48127, "GTCGT":40972, "GTCGC":44043, "GTCGG":48106, "GTGAA":50555, "GTGAT":45161, "GTGAC":29739, "GTGAG":39280, "GTGTA":18082, "GTGTT":42221, "GTGTC":25959, "GTGTG":35529, "GTGCA":32710, "GTGCT":56107, "GTGCC":41680, "GTGCG":35592, "GTGGA":55035, "GTGGT":68250, "GTGGC":57303, "GTGGG":67111, "GCAAA":54409, "GCAAT":38434, "GCAAC":51433, "GCAAG":56417, "GCATA":26235, "GCATT":38546, "GCATC":49153, "GCATG":36148, "GCACA":231101, "GCACT":25571, "GCACC":61506, "GCACG":34419, "GCAGA":90762, "GCAGT":35410, "GCAGC":71204, "GCAGG":90520, "GCTAA":20806, "GCTAT":43210, "GCTAC":31709, "GCTAG":24464, "GCTTA":25672, "GCTTT":58909, "GCTTC":76478, "GCTTG":61609, "GCTCA":47119, "GCTCT":40375, "GCTCC":61013, "GCTCG":48822, "GCTGA":61815, "GCTGT":51822, "GCTGC":73993, "GCTGG":100824, "GCCAA":70933, "GCCAT":53369, "GCCAC":60022, "GCCAG":86900, "GCCTA":28460, "GCCTT":58026, "GCCTC":59932, "GCCTG":72759, "GCCCA":71182, "GCCCT":52292, "GCCCC":59045, "GCCCG":57639, "GCCGA":75207, "GCCGT":55513, "GCCGC":84948, "GCCGG":79765, "GCGAA":50724, "GCGAT":50649, "GCGAC":47874, "GCGAG":51215, "GCGTA":22612, "GCGTT":38665, "GCGTC":39388, "GCGTG":38428, "GCGCA":47613, "GCGCT":46191, "GCGCC":65977, "GCGCG":49124, "GCGGA":56881, "GCGGT":57591, "GCGGC":82313, "GCGGG":69278, "GGAAA":71467, "GGAAT":45769, "GGAAC":53659, "GGAAG":352509, "GGATA":42378, "GGATT":51108, "GGATC":44590, "GGATG":63142, "GGACA":44023, "GGACT":31421, "GGACC":37458, "GGACG":44217, "GGAGA":121911, "GGAGT":36562, "GGAGC":58567, "GGAGG":100508, "GGTAA":30230, "GGTAT":30113, "GGTAC":24198, "GGTAG":46253, "GGTTA":29368, "GGTTT":70367, "GGTTC":55782, "GGTTG":81356, "GGTCA":50628, "GGTCT":51225, "GGTCC":35846, "GGTCG":50373, "GGTGA":70951, "GGTGT":50894, "GGTGC":56111, "GGTGG":99789, "GGCAA":64858, "GGCAT":50303, "GGCAC":42485, "GGCAG":81719, "GGCTA":36448, "GGCTT":70078, "GGCTC":50695, "GGCTG":87050, "GGCCA":68331, "GGCCT":54132, "GGCCC":47500, "GGCCG":69008, "GGCGA":82260, "GGCGT":50282, "GGCGC":66339, "GGCGG":102041, "GGGAA":57337, "GGGAT":51895, "GGGAC":36894, "GGGAG":75919, "GGGTA":32989, "GGGTT":70180, "GGGTC":46718, "GGGTG":68500, "GGGCA":62707, "GGGCT":58310, "GGGCC":47362, "GGGCG":65579, "GGGGA":65419, "GGGGT":63335, "GGGGC":57509, "GGGGG":148797 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 932677, "total_bases": 56893297, "q20_bases": 55470434, "q30_bases": 52768700, "total_cycles": 61, "quality_curves": { "A":[39.3972,39.1608,39.1601,38.9085,38.9241,39.0472,39.0747,39.1046,39.1681,39.1605,39.1613,39.1614,39.1955,39.174,39.0916,39.0807,39.175,39.1315,39.2099,39.0852,38.3843,39.0875,39.1449,39.1663,38.5173,39.0627,39.1123,38.3439,38.9847,37.9995,39.0487,39.1374,39.0201,38.926,38.9134,38.676,38.9761,39.0262,38.9537,38.8235,38.1588,38.133,38.7048,38.586,38.5759,38.724,38.7074,37.9246,38.5059,37.9012,37.697,37.4732,38.1971,37.9933,37.6943,36.6721,36.3964,36.0018,35.8452,36.1581,35.35], 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"GC":[0.564982,0.52712,0.587894,0.564683,0.561615,0.531545,0.525694,0.519059,0.521167,0.525679,0.530763,0.53727,0.53581,0.538357,0.545365,0.541612,0.542223,0.545128,0.539999,0.540359,0.546763,0.541402,0.5406,0.544392,0.540478,0.54217,0.543183,0.537606,0.537813,0.543873,0.539425,0.53987,0.541999,0.538368,0.538697,0.540422,0.535959,0.535967,0.542909,0.536435,0.538486,0.54228,0.536298,0.534167,0.541021,0.536061,0.535755,0.539989,0.534449,0.536335,0.540388,0.534777,0.534571,0.541037,0.534222,0.533077,0.539188,0.535161,0.535929,0.541092,0.536235,0.53516,0.540938,0.533043,0.53722,0.542596,0.537204,0.539355,0.548491,0.539293,0.537328,0.544479,0.536261,0.53851,0.545743,0.543232,0.542982,0.548255,0.542556,0.545334,0.553559,0.550694,0.550389,0.562304,0.563364,0.565052,0.579303,0.581502,0.584501,0.596919,0.614736] }, "kmer_count": { "AAAAA":69311, "AAAAT":46358, "AAAAC":52527, "AAAAG":53512, "AAATA":30289, "AAATT":33556, "AAATC":42242, "AAATG":35634, "AAACA":42565, "AAACT":31876, "AAACC":58691, 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"CTTGT":41941, "CTTGC":42512, "CTTGG":51202, "CTCAA":39315, "CTCAT":31437, "CTCAC":28003, "CTCAG":32346, "CTCTA":20404, "CTCTT":44077, "CTCTC":35661, "CTCTG":36073, "CTCCA":56313, "CTCCT":79961, "CTCCC":54782, "CTCCG":45203, "CTCGA":38213, "CTCGT":31322, "CTCGC":36648, "CTCGG":40506, "CTGAA":42348, "CTGAT":37714, "CTGAC":30802, "CTGAG":32730, "CTGTA":17770, "CTGTT":46586, "CTGTC":29506, "CTGTG":31796, "CTGCA":43737, "CTGCT":72581, "CTGCC":59223, "CTGCG":41622, "CTGGA":58655, "CTGGT":57171, "CTGGC":61172, "CTGGG":58493, "CCAAA":59114, "CCAAT":36257, "CCAAC":67066, "CCAAG":49133, "CCATA":26898, "CCATT":35733, "CCATC":54060, "CCATG":42877, "CCACA":51587, "CCACT":29562, "CCACC":93773, "CCACG":40353, "CCAGA":51596, "CCAGT":39237, "CCAGC":82459, "CCAGG":59664, "CCTAA":17196, "CCTAT":21288, "CCTAC":25075, "CCTAG":14352, "CCTTA":18686, "CCTTT":48980, "CCTTC":64295, "CCTTG":52205, "CCTCA":44310, "CCTCT":43353, "CCTCC":86457, "CCTCG":47750, "CCTGA":44035, "CCTGT":40549, "CCTGC":78297, "CCTGG":60170, "CCCAA":61264, "CCCAT":41410, "CCCAC":61223, "CCCAG":58434, "CCCTA":22051, "CCCTT":39793, "CCCTC":50123, "CCCTG":48182, "CCCCA":65293, "CCCCT":43948, "CCCCC":46839, "CCCCG":48313, "CCCGA":40885, "CCCGT":29264, "CCCGC":57377, "CCCGG":50522, "CCGAA":43610, "CCGAT":39719, "CCGAC":41509, "CCGAG":41392, "CCGTA":21293, "CCGTT":32909, "CCGTC":41232, "CCGTG":32151, "CCGCA":44461, "CCGCT":44639, "CCGCC":86013, "CCGCG":43674, "CCGGA":45846, "CCGGT":43562, "CCGGC":65752, "CCGGG":49724, "CGAAA":40601, "CGAAT":26768, "CGAAC":34877, "CGAAG":49557, "CGATA":26485, "CGATT":33273, "CGATC":39115, "CGATG":51477, "CGACA":34537, "CGACT":27666, "CGACC":46315, "CGACG":44387, "CGAGA":36945, "CGAGT":21782, "CGAGC":38293, "CGAGG":47622, "CGTAA":18790, "CGTAT":16085, "CGTAC":15953, "CGTAG":21356, "CGTTA":14261, "CGTTT":31407, "CGTTC":33544, "CGTTG":37382, "CGTCA":31175, "CGTCT":31413, "CGTCC":34973, "CGTCG":42198, "CGTGA":26768, "CGTGT":19516, "CGTGC":26706, "CGTGG":38900, "CGCAA":32112, "CGCAT":24926, "CGCAC":30092, "CGCAG":40741, "CGCTA":16001, "CGCTT":37253, "CGCTC":35212, "CGCTG":50605, "CGCCA":58573, "CGCCT":52457, "CGCCC":55921, "CGCCG":73242, "CGCGA":32610, "CGCGT":22406, "CGCGC":38959, "CGCGG":43915, "CGGAA":41487, "CGGAT":33773, "CGGAC":25974, "CGGAG":44632, "CGGTA":23565, "CGGTT":38288, "CGGTC":37975, "CGGTG":51766, "CGGCA":51556, "CGGCT":52925, "CGGCC":55881, "CGGCG":73508, "CGGGA":40750, "CGGGT":39628, "CGGGC":45113, "CGGGG":47736, "GAAAA":65491, "GAAAT":45338, "GAAAC":43312, "GAAAG":49306, "GAATA":27565, "GAATT":32809, "GAATC":33940, "GAATG":31445, "GAACA":41242, "GAACT":34239, "GAACC":44987, "GAACG":32663, "GAAGA":68311, "GAAGT":36646, "GAAGC":60106, "GAAGG":61406, "GATAA":32001, "GATAT":30184, "GATAC":22483, "GATAG":27125, "GATTA":23197, "GATTT":45744, "GATTC":35946, "GATTG":38090, "GATCA":41117, "GATCT":35436, "GATCC":37041, "GATCG":37950, "GATGA":57432, "GATGT":35278, "GATGC":41986, "GATGG":55793, "GACAA":38866, "GACAT":28085, "GACAC":22846, "GACAG":28584, "GACTA":15558, "GACTT":32359, "GACTC":20677, "GACTG":26746, "GACCA":44333, "GACCT":34264, "GACCC":41170, "GACCG":38766, "GACGA":46012, "GACGT":23353, "GACGC":32209, "GACGG":39772, "GAGAA":58349, "GAGAT":42415, "GAGAC":36139, "GAGAG":35401, "GAGTA":16608, "GAGTT":31508, "GAGTC":20348, "GAGTG":20919, "GAGCA":44174, "GAGCT":32934, "GAGCC":39764, "GAGCG":33428, "GAGGA":76404, "GAGGT":40447, "GAGGC":48848, "GAGGG":45174, "GTAAA":20572, "GTAAT":18089, "GTAAC":18024, "GTAAG":14120, "GTATA":11996, "GTATT":23205, "GTATC":20326, "GTATG":19101, "GTACA":15744, "GTACT":15412, "GTACC":19098, "GTACG":16183, "GTAGA":24223, "GTAGT":19325, "GTAGC":23887, "GTAGG":24279, "GTTAA":15392, "GTTAT":21181, "GTTAC":20215, "GTTAG":14150, "GTTTA":20076, "GTTTT":54336, "GTTTC":43684, "GTTTG":49656, "GTTCA":35836, "GTTCT":41350, "GTTCC":45880, "GTTCG":35972, "GTTGA":44439, "GTTGT":43629, "GTTGC":42653, "GTTGG":65274, "GTCAA":32160, "GTCAT":28984, "GTCAC":23746, "GTCAG":28883, "GTCTA":15655, "GTCTT":40287, "GTCTC":35164, "GTCTG":32320, "GTCCA":34551, "GTCCT":33828, "GTCCC":29509, "GTCCG":25097, "GTCGA":36640, "GTCGT":32607, "GTCGC":35150, "GTCGG":38606, "GTGAA":37915, "GTGAT":35662, "GTGAC":23564, "GTGAG":26683, "GTGTA":13407, "GTGTT":35092, "GTGTC":20699, "GTGTG":29243, "GTGCA":25023, "GTGCT":34118, "GTGCC":33708, "GTGCG":28806, "GTGGA":41804, "GTGGT":57103, "GTGGC":46954, "GTGGG":54175, "GCAAA":41274, "GCAAT":31129, "GCAAC":40561, "GCAAG":39518, "GCATA":19745, "GCATT":31227, "GCATC":39378, "GCATG":29148, "GCACA":27589, "GCACT":20239, "GCACC":49507, "GCACG":26953, "GCAGA":43171, "GCAGT":28576, "GCAGC":57124, "GCAGG":72324, "GCTAA":15460, "GCTAT":23983, "GCTAC":25428, "GCTAG":14012, "GCTTA":18707, "GCTTT":48297, "GCTTC":63192, "GCTTG":50360, "GCTCA":36560, "GCTCT":32506, "GCTCC":50367, "GCTCG":39337, "GCTGA":47581, "GCTGT":41071, "GCTGC":59905, "GCTGG":82460, "GCCAA":54162, "GCCAT":42214, "GCCAC":48341, "GCCAG":58889, "GCCTA":20678, "GCCTT":46570, "GCCTC":49543, "GCCTG":58703, "GCCCA":54198, "GCCCT":42100, "GCCCC":47901, "GCCCG":45539, "GCCGA":58296, "GCCGT":44299, "GCCGC":67541, "GCCGG":63883, "GCGAA":38263, "GCGAT":40221, "GCGAC":37991, "GCGAG":35608, "GCGTA":16817, "GCGTT":30891, "GCGTC":30874, "GCGTG":30260, "GCGCA":35092, "GCGCT":36193, "GCGCC":52483, "GCGCG":38498, "GCGGA":43090, "GCGGT":46976, "GCGGC":66180, "GCGGG":55604, "GGAAA":55057, "GGAAT":37326, "GGAAC":44363, "GGAAG":58251, "GGATA":32093, "GGATT":42255, "GGATC":36572, "GGATG":51090, "GGACA":32599, "GGACT":25805, "GGACC":30223, "GGACG":34854, "GGAGA":68266, "GGAGT":29308, "GGAGC":47362, "GGAGG":81420, "GGTAA":22351, "GGTAT":24692, "GGTAC":19695, "GGTAG":29990, "GGTTA":22069, "GGTTT":58514, "GGTTC":46137, "GGTTG":68634, "GGTCA":37526, "GGTCT":42197, "GGTCC":28897, "GGTCG":40119, "GGTGA":53086, "GGTGT":42435, "GGTGC":46297, "GGTGG":83087, "GGCAA":49237, "GGCAT":40382, "GGCAC":33651, "GGCAG":55087, "GGCTA":27217, "GGCTT":56914, "GGCTC":41277, "GGCTG":70740, "GGCCA":50581, "GGCCT":43265, "GGCCC":37545, "GGCCG":54561, "GGCGA":62874, "GGCGT":40224, "GGCGC":51664, "GGCGG":82203, "GGGAA":44116, "GGGAT":41784, "GGGAC":29237, "GGGAG":51750, "GGGTA":24441, "GGGTT":58510, "GGGTC":38985, "GGGTG":55656, "GGGCA":46611, "GGGCT":47284, "GGGCC":37424, "GGGCG":52380, "GGGGA":48901, "GGGGT":51895, "GGGGC":46624, "GGGGG":41014 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-28B_S23_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-28B_S23_R2_001.fastq.gz -o AM-AL-28B.trim.R1.fastq.gz -O AM-AL-28B.trim.R2.fastq.gz -m --merged_out AM-AL-28B.trim.merged.fastq.gz " }