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"GGGCT":68427, "GGGCC":57482, "GGGCG":78302, "GGGGA":84987, "GGGGT":74652, "GGGGC":68340, "GGGGG":175154 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1115621, "total_bases": 68052881, "q20_bases": 66370189, "q30_bases": 63132980, "total_cycles": 61, "quality_curves": { "A":[39.3386,39.1498,39.1723,39.0013,39.0125,39.0896,39.2066,39.1357,39.158,39.1952,39.1587,39.1668,39.2087,39.1648,39.114,39.1034,39.2049,39.1372,39.2092,39.1259,38.4274,39.1098,39.1778,39.1969,38.529,39.0752,39.1304,38.3082,38.996,37.9801,39.0822,39.169,39.0628,38.9016,38.4447,39.0207,39.0036,39.0474,38.9468,39.0241,38.8289,38.6299,38.7138,38.5669,38.5251,38.7409,38.7017,37.8041,38.491,37.8187,37.6728,37.4532,38.2169,38.0694,37.744,36.755,36.4053,35.9879,35.8777,36.319,35.4299], 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"GC":[0.616597,0.538335,0.61006,0.594264,0.584983,0.53105,0.529048,0.514083,0.512698,0.522677,0.525355,0.528393,0.534922,0.535891,0.538802,0.541456,0.536286,0.538148,0.538204,0.536457,0.538034,0.539546,0.538717,0.538065,0.542046,0.538227,0.538985,0.538992,0.536078,0.536705,0.539654,0.538179,0.538675,0.538338,0.538635,0.539653,0.538809,0.535467,0.538419,0.539227,0.535268,0.53664,0.540383,0.536945,0.538298,0.538879,0.537765,0.537986,0.538707,0.537059,0.540088,0.537253,0.535638,0.537449,0.536877,0.536577,0.540708,0.537915,0.538414,0.540823,0.540938,0.538112,0.544682,0.543508,0.538471,0.543387,0.543459,0.543474,0.545479,0.545286,0.542272,0.549491,0.548258,0.547206,0.551045,0.550509,0.546991,0.552767,0.555804,0.553407,0.559113,0.561105,0.566435,0.5762,0.578804,0.594046,0.602914,0.604915,0.602291,0.605956,0.597672] }, "kmer_count": { "AAAAA":81495, "AAAAT":53283, "AAAAC":62037, "AAAAG":64833, "AAATA":35371, "AAATT":37696, "AAATC":47822, "AAATG":40428, "AAACA":52036, "AAACT":37572, 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"CTTGA":50340, "CTTGT":48331, "CTTGC":46415, "CTTGG":58842, "CTCAA":47064, "CTCAT":39276, "CTCAC":34683, "CTCAG":37569, "CTCTA":26690, "CTCTT":57926, "CTCTC":47807, "CTCTG":43282, "CTCCA":73516, "CTCCT":103285, "CTCCC":74795, "CTCCG":57680, "CTCGA":46491, "CTCGT":37641, "CTCGC":44493, "CTCGG":47408, "CTGAA":48081, "CTGAT":40616, "CTGAC":33705, "CTGAG":37137, "CTGTA":19327, "CTGTT":52474, "CTGTC":34305, "CTGTG":34785, "CTGCA":47807, "CTGCT":79954, "CTGCC":68801, "CTGCG":44467, "CTGGA":65823, "CTGGT":61927, "CTGGC":66480, "CTGGG":65896, "CCAAA":73894, "CCAAT":43895, "CCAAC":83497, "CCAAG":60046, "CCATA":34032, "CCATT":41337, "CCATC":66976, "CCATG":45827, "CCACA":66442, "CCACT":36783, "CCACC":116967, "CCACG":48615, "CCAGA":62878, "CCAGT":46932, "CCAGC":94015, "CCAGG":69960, "CCTAA":21964, "CCTAT":26786, "CCTAC":34101, "CCTAG":17884, "CCTTA":23415, "CCTTT":60834, "CCTTC":81758, "CCTTG":62256, "CCTCA":56397, "CCTCT":58605, "CCTCC":113598, "CCTCG":60091, "CCTGA":50996, "CCTGT":48571, "CCTGC":88369, "CCTGG":70029, "CCCAA":79117, "CCCAT":48821, "CCCAC":78948, "CCCAG":71680, "CCCTA":30439, "CCCTT":51134, "CCCTC":66049, "CCCTG":57854, "CCCCA":84604, "CCCCT":59611, "CCCCC":64006, "CCCCG":61800, "CCCGA":49608, "CCCGT":36575, "CCCGC":70192, "CCCGG":58562, "CCGAA":49770, "CCGAT":45101, "CCGAC":48888, "CCGAG":48165, "CCGTA":24803, "CCGTT":37126, "CCGTC":48371, "CCGTG":35397, "CCGCA":52903, "CCGCT":52596, "CCGCC":105871, "CCGCG":49306, "CCGGA":52175, "CCGGT":48644, "CCGGC":74467, "CCGGG":56054, "CGAAA":47900, "CGAAT":29741, "CGAAC":39609, "CGAAG":55427, "CGATA":30385, "CGATT":36738, "CGATC":45938, "CGATG":56942, "CGACA":39334, "CGACT":33337, "CGACC":54485, "CGACG":51894, "CGAGA":44465, "CGAGT":24523, "CGAGC":42811, "CGAGG":56140, "CGTAA":21149, "CGTAT":17327, "CGTAC":18196, "CGTAG":24707, "CGTTA":15936, "CGTTT":35661, "CGTTC":38135, "CGTTG":38839, "CGTCA":35236, "CGTCT":37131, "CGTCC":43298, "CGTCG":48074, "CGTGA":29420, "CGTGT":20762, "CGTGC":28802, "CGTGG":42514, "CGCAA":35925, "CGCAT":28004, "CGCAC":35195, "CGCAG":42806, "CGCTA":19267, "CGCTT":42165, "CGCTC":43802, "CGCTG":50817, "CGCCA":67303, "CGCCT":64669, "CGCCC":69507, "CGCCG":84482, "CGCGA":35821, "CGCGT":25001, "CGCGC":42692, "CGCGG":48222, "CGGAA":45310, "CGGAT":37187, "CGGAC":29897, "CGGAG":52733, "CGGTA":26962, "CGGTT":40502, "CGGTC":43191, "CGGTG":53471, "CGGCA":55475, "CGGCT":61458, "CGGCC":66203, "CGGCG":81803, "CGGGA":47960, "CGGGT":40938, "CGGGC":50658, "CGGGG":55188, "GAAAA":77313, "GAAAT":50566, "GAAAC":50975, "GAAAG":58627, "GAATA":31530, "GAATT":36725, "GAATC":38941, "GAATG":34788, "GAACA":47763, "GAACT":40568, "GAACC":52227, "GAACG":36546, "GAAGA":82710, "GAAGT":41198, "GAAGC":66671, "GAAGG":73177, "GATAA":36872, "GATAT":33218, "GATAC":25885, "GATAG":32907, "GATTA":26226, "GATTT":48791, "GATTC":40278, "GATTG":41967, "GATCA":45060, "GATCT":42387, "GATCC":46023, "GATCG":42704, "GATGA":66425, "GATGT":39812, "GATGC":45052, "GATGG":64033, "GACAA":45191, "GACAT":32034, "GACAC":27483, "GACAG":32624, "GACTA":19077, "GACTT":37013, "GACTC":24820, "GACTG":28796, "GACCA":52289, "GACCT":40678, "GACCC":48453, "GACCG":42951, "GACGA":54408, "GACGT":26041, "GACGC":37610, "GACGG":44329, "GAGAA":71977, "GAGAT":50615, "GAGAC":43760, "GAGAG":44519, "GAGTA":20007, "GAGTT":37074, "GAGTC":23289, "GAGTG":23559, "GAGCA":50298, "GAGCT":35644, "GAGCC":47405, "GAGCG":38703, "GAGGA":91835, "GAGGT":49636, "GAGGC":59124, "GAGGG":55194, "GTAAA":22825, "GTAAT":19900, "GTAAC":20300, "GTAAG":16204, "GTATA":14114, "GTATT":24612, "GTATC":22943, "GTATG":21819, "GTACA":17494, "GTACT":17595, "GTACC":21419, "GTACG":18932, "GTAGA":29444, "GTAGT":22345, "GTAGC":26922, "GTAGG":28366, "GTTAA":17544, "GTTAT":23858, "GTTAC":23692, "GTTAG":16102, "GTTTA":22423, "GTTTT":58830, "GTTTC":49686, "GTTTG":54524, "GTTCA":38647, "GTTCT":48045, "GTTCC":55746, "GTTCG":41009, "GTTGA":49488, "GTTGT":48813, "GTTGC":44701, "GTTGG":71249, "GTCAA":36818, "GTCAT":32591, "GTCAC":27946, "GTCAG":31372, "GTCTA":19596, "GTCTT":44275, "GTCTC":43499, "GTCTG":37479, "GTCCA":40032, "GTCCT":42800, "GTCCC":37130, "GTCCG":29298, "GTCGA":40451, "GTCGT":36297, "GTCGC":38943, "GTCGG":42623, "GTGAA":41025, "GTGAT":39260, "GTGAC":24878, "GTGAG":30094, "GTGTA":14932, "GTGTT":37395, "GTGTC":23176, "GTGTG":30432, "GTGCA":26125, "GTGCT":36582, "GTGCC":35580, "GTGCG":30050, "GTGGA":49389, "GTGGT":61602, "GTGGC":52051, "GTGGG":60607, "GCAAA":46727, "GCAAT":33872, "GCAAC":45487, "GCAAG":43950, "GCATA":24250, "GCATT":34490, "GCATC":43786, "GCATG":31145, "GCACA":30369, "GCACT":22769, "GCACC":56718, "GCACG":30352, "GCAGA":48998, "GCAGT":30600, "GCAGC":61798, "GCAGG":76343, "GCTAA":18056, "GCTAT":29137, "GCTAC":30208, "GCTAG":16118, "GCTTA":21829, "GCTTT":53935, "GCTTC":70993, "GCTTG":53425, "GCTCA":41607, "GCTCT":39342, "GCTCC":60640, "GCTCG":44205, "GCTGA":50200, "GCTGT":42208, "GCTGC":62649, "GCTGG":85600, "GCCAA":64638, "GCCAT":48528, "GCCAC":56976, "GCCAG":63997, "GCCTA":26434, "GCCTT":53856, "GCCTC":63407, "GCCTG":64078, "GCCCA":64703, "GCCCT":51824, "GCCCC":59624, "GCCCG":53417, "GCCGA":65450, "GCCGT":49303, "GCCGC":78974, "GCCGG":70009, "GCGAA":41938, "GCGAT":43129, "GCGAC":41748, "GCGAG":40582, "GCGTA":18392, "GCGTT":31742, "GCGTC":34169, "GCGTG":31643, "GCGCA":35880, "GCGCT":37599, "GCGCC":57995, "GCGCG":40621, "GCGGA":50359, "GCGGT":50233, "GCGGC":74247, "GCGGG":61164, "GGAAA":63111, "GGAAT":42496, "GGAAC":50421, "GGAAG":66772, "GGATA":36921, "GGATT":46348, "GGATC":42646, "GGATG":58702, "GGACA":38074, "GGACT":28435, "GGACC":35672, "GGACG":39888, "GGAGA":85686, "GGAGT":34539, "GGAGC":54254, "GGAGG":98507, "GGTAA":23591, "GGTAT":26742, "GGTAC":22080, "GGTAG":35637, "GGTTA":23886, "GGTTT":62469, "GGTTC":51632, "GGTTG":73990, "GGTCA":41419, "GGTCT":47927, "GGTCC":35020, "GGTCG":44439, "GGTGA":59492, "GGTGT":44930, "GGTGC":48682, "GGTGG":92195, "GGCAA":54888, "GGCAT":45211, "GGCAC":36699, "GGCAG":59657, "GGCTA":33505, "GGCTT":62163, "GGCTC":48354, "GGCTG":76426, "GGCCA":58008, "GGCCT":50193, "GGCCC":45796, "GGCCG":62753, "GGCGA":70434, "GGCGT":43568, "GGCGC":55237, "GGCGG":93306, "GGGAA":50999, "GGGAT":49248, "GGGAC":33580, "GGGAG":63304, "GGGTA":27520, "GGGTT":62570, "GGGTC":42932, "GGGTG":62422, "GGGCA":51078, "GGGCT":52700, "GGGCC":43814, "GGGCG":59334, "GGGGA":58939, "GGGGT":58475, "GGGGC":52523, "GGGGG":49539 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-27C_S21_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-27C_S21_R2_001.fastq.gz -o AM-AL-27C.trim.R1.fastq.gz -O AM-AL-27C.trim.R2.fastq.gz -m --merged_out AM-AL-27C.trim.merged.fastq.gz " }