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"GCGTG":46251, "GCGCA":58915, "GCGCT":59554, "GCGCC":83315, "GCGCG":63267, "GCGGA":77172, "GCGGT":69697, "GCGGC":108862, "GCGGG":86632, "GGAAA":100088, "GGAAT":65921, "GGAAC":73299, "GGAAG":354556, "GGATA":58795, "GGATT":69703, "GGATC":61176, "GGATG":83505, "GGACA":59486, "GGACT":48663, "GGACC":53042, "GGACG":59720, "GGAGA":149358, "GGAGT":52059, "GGAGC":78923, "GGAGG":132845, "GGTAA":40708, "GGTAT":39871, "GGTAC":33920, "GGTAG":58193, "GGTTA":38100, "GGTTT":84277, "GGTTC":68155, "GGTTG":91504, "GGTCA":62344, "GGTCT":62621, "GGTCC":48264, "GGTCG":62202, "GGTGA":90505, "GGTGT":58096, "GGTGC":68062, "GGTGG":118023, "GGCAA":87332, "GGCAT":67318, "GGCAC":55718, "GGCAG":97928, "GGCTA":48348, "GGCTT":88020, "GGCTC":66755, "GGCTG":103106, "GGCCA":91185, "GGCCT":72330, "GGCCC":66024, "GGCCG":92762, "GGCGA":108358, "GGCGT":65115, "GGCGC":84262, "GGCGG":127934, "GGGAA":76868, "GGGAT":69385, "GGGAC":54783, "GGGAG":100586, "GGGTA":40480, "GGGTT":82106, "GGGTC":54908, "GGGTG":80628, "GGGCA":79316, "GGGCT":70763, "GGGCC":64079, "GGGCG":83861, "GGGGA":85102, "GGGGT":72732, "GGGGC":70460, "GGGGG":208988 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1216104, "total_bases": 74182344, "q20_bases": 72618228, "q30_bases": 69283527, "total_cycles": 61, "quality_curves": { "A":[39.3906,39.225,39.2043,39.0428,39.0587,39.1191,39.2188,39.1586,39.2197,39.2139,39.1878,39.2144,39.2523,39.2339,39.1488,39.1256,39.2217,39.171,39.2607,39.1584,38.453,39.1248,39.1867,39.2067,38.5986,39.133,39.1617,38.417,39.0349,37.9347,39.1044,39.2013,39.0969,39.138,38.9342,39.0677,38.4151,39.0893,38.5659,39.0591,38.9024,38.684,38.8748,38.7716,38.701,38.867,38.8485,38.0984,38.7407,38.2324,38.2187,38.0462,38.5376,38.4202,38.1955,37.3849,37.1245,36.8791,36.7933,37.0011,36.422], 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"CTTGT":45788, "CTTGC":46745, "CTTGG":57833, "CTCAA":49356, "CTCAT":39837, "CTCAC":34590, "CTCAG":38436, "CTCTA":27715, "CTCTT":58795, "CTCTC":45608, "CTCTG":42468, "CTCCA":69938, "CTCCT":88646, "CTCCC":63540, "CTCCG":51719, "CTCGA":46274, "CTCGT":36043, "CTCGC":42613, "CTCGG":45398, "CTGAA":51302, "CTGAT":42213, "CTGAC":35457, "CTGAG":37724, "CTGTA":20489, "CTGTT":52416, "CTGTC":32415, "CTGTG":32986, "CTGCA":48150, "CTGCT":71208, "CTGCC":65366, "CTGCG":43084, "CTGGA":68787, "CTGGT":58070, "CTGGC":64487, "CTGGG":60009, "CCAAA":80537, "CCAAT":46997, "CCAAC":77854, "CCAAG":62395, "CCATA":36772, "CCATT":45951, "CCATC":67373, "CCATG":46340, "CCACA":62306, "CCACT":36065, "CCACC":106258, "CCACG":46886, "CCAGA":65500, "CCAGT":46083, "CCAGC":88924, "CCAGG":67129, "CCTAA":24333, "CCTAT":27354, "CCTAC":32333, "CCTAG":17240, "CCTTA":24002, "CCTTT":61496, "CCTTC":78469, "CCTTG":62105, "CCTCA":55933, "CCTCT":53800, "CCTCC":96483, "CCTCG":55388, "CCTGA":51825, "CCTGT":45743, "CCTGC":79826, "CCTGG":66504, "CCCAA":76263, "CCCAT":49791, "CCCAC":71855, "CCCAG":66516, "CCCTA":28523, "CCCTT":50062, "CCCTC":58904, "CCCTG":54791, "CCCCA":75828, "CCCCT":52274, "CCCCC":55610, "CCCCG":55711, "CCCGA":47259, "CCCGT":33468, "CCCGC":66717, "CCCGG":55436, "CCGAA":51690, "CCGAT":46505, "CCGAC":47967, "CCGAG":48149, "CCGTA":25044, "CCGTT":35695, "CCGTC":45886, "CCGTG":35469, "CCGCA":52758, "CCGCT":51895, "CCGCC":98771, "CCGCG":51811, "CCGGA":51841, "CCGGT":46695, "CCGGC":70361, "CCGGG":52158, "CGAAA":50086, "CGAAT":33097, "CGAAC":39804, "CGAAG":57180, "CGATA":31556, "CGATT":39617, "CGATC":48977, "CGATG":57014, "CGACA":39995, "CGACT":33059, "CGACC":52789, "CGACG":52228, "CGAGA":45295, "CGAGT":25666, "CGAGC":42960, "CGAGG":53321, "CGTAA":22996, "CGTAT":18552, "CGTAC":17837, "CGTAG":26287, "CGTTA":16947, "CGTTT":36109, "CGTTC":37634, "CGTTG":39257, "CGTCA":35496, "CGTCT":35423, "CGTCC":40591, "CGTCG":47158, "CGTGA":31530, "CGTGT":19939, "CGTGC":28652, "CGTGG":41133, "CGCAA":38345, "CGCAT":29993, "CGCAC":34189, "CGCAG":42930, "CGCTA":19982, "CGCTT":42647, "CGCTC":42918, "CGCTG":51741, "CGCCA":68604, "CGCCT":61510, "CGCCC":65103, "CGCCG":82747, "CGCGA":37219, "CGCGT":25303, "CGCGC":44254, "CGCGG":49916, "CGGAA":47969, "CGGAT":39762, "CGGAC":29441, "CGGAG":50368, "CGGTA":27667, "CGGTT":40935, "CGGTC":41167, "CGGTG":52172, "CGGCA":57440, "CGGCT":58222, "CGGCC":62744, "CGGCG":77917, "CGGGA":45582, "CGGGT":38884, "CGGGC":48379, "CGGGG":49249, "GAAAA":88087, "GAAAT":57880, "GAAAC":54474, "GAAAG":62178, "GAATA":36316, "GAATT":44258, "GAATC":43388, "GAATG":38613, "GAACA":49476, "GAACT":41517, "GAACC":51956, "GAACG":37509, "GAAGA":88247, "GAAGT":43922, "GAAGC":68786, "GAAGG":70773, "GATAA":41068, "GATAT":37632, "GATAC":26204, "GATAG":32252, "GATTA":30152, "GATTT":57653, "GATTC":44582, "GATTG":44016, "GATCA":47176, "GATCT":46093, "GATCC":45905, "GATCG":44127, "GATGA":69875, "GATGT":40718, "GATGC":45758, "GATGG":62655, "GACAA":48197, "GACAT":34439, "GACAC":27457, "GACAG":33606, "GACTA":20389, "GACTT":40101, "GACTC":25455, "GACTG":30979, "GACCA":53448, "GACCT":41129, "GACCC":46997, "GACCG":44524, "GACGA":55313, "GACGT":26562, "GACGC":38702, "GACGG":43320, "GAGAA":73670, "GAGAT":52278, "GAGAC":45683, "GAGAG":44222, "GAGTA":21422, "GAGTT":39328, "GAGTC":23167, "GAGTG":24491, "GAGCA":50147, "GAGCT":37572, "GAGCC":47841, "GAGCG":38084, "GAGGA":89266, "GAGGT":46286, "GAGGC":55908, "GAGGG":50643, "GTAAA":28205, "GTAAT":24095, "GTAAC":20436, "GTAAG":18020, "GTATA":15964, "GTATT":28435, "GTATC":23753, "GTATG":22601, "GTACA":19651, "GTACT":18244, "GTACC":21704, "GTACG":18543, "GTAGA":31477, "GTAGT":22234, "GTAGC":27891, "GTAGG":26941, "GTTAA":20823, "GTTAT":26420, "GTTAC":22628, "GTTAG":17051, "GTTTA":26140, "GTTTT":63399, "GTTTC":52180, "GTTTG":52995, "GTTCA":40884, "GTTCT":46454, "GTTCC":52244, "GTTCG":38036, "GTTGA":50555, "GTTGT":46993, "GTTGC":43310, "GTTGG":63785, "GTCAA":38316, "GTCAT":33110, "GTCAC":26647, "GTCAG":31333, "GTCTA":19746, "GTCTT":43185, "GTCTC":40814, "GTCTG":36531, "GTCCA":39825, "GTCCT":38998, "GTCCC":34900, "GTCCG":29073, "GTCGA":41378, "GTCGT":34639, "GTCGC":37862, "GTCGG":40229, "GTGAA":45181, "GTGAT":39258, "GTGAC":25264, "GTGAG":31116, "GTGTA":16112, "GTGTT":36469, "GTGTC":23031, "GTGTG":27313, "GTGCA":26589, "GTGCT":35574, "GTGCC":35689, "GTGCG":28500, "GTGGA":48773, "GTGGT":55636, "GTGGC":48632, "GTGGG":53502, "GCAAA":51436, "GCAAT":37902, "GCAAC":46584, "GCAAG":44881, "GCATA":25481, "GCATT":38060, "GCATC":44735, "GCATG":33032, "GCACA":31207, "GCACT":23976, "GCACC":54099, "GCACG":30612, "GCAGA":49977, "GCAGT":31638, "GCAGC":61507, "GCAGG":73687, "GCTAA":19094, "GCTAT":28053, "GCTAC":29617, "GCTAG":15968, "GCTTA":24401, "GCTTT":54911, "GCTTC":69381, "GCTTG":51546, "GCTCA":41620, "GCTCT":40706, "GCTCC":55257, "GCTCG":42886, "GCTGA":52330, "GCTGT":40977, "GCTGC":59499, "GCTGG":80767, "GCCAA":67158, "GCCAT":49662, "GCCAC":54954, "GCCAG":65858, "GCCTA":26918, "GCCTT":54060, "GCCTC":58630, "GCCTG":61677, "GCCCA":63084, "GCCCT":51035, "GCCCC":54779, "GCCCG":51044, "GCCGA":66937, "GCCGT":47604, "GCCGC":77152, "GCCGG":66888, "GCGAA":44216, "GCGAT":44116, "GCGAC":40553, "GCGAG":39997, "GCGTA":19722, "GCGTT":33661, "GCGTC":34234, "GCGTG":30923, "GCGCA":37251, "GCGCT":38567, "GCGCC":56403, "GCGCG":41937, "GCGGA":50024, "GCGGT":48343, "GCGGC":72440, "GCGGG":57762, "GGAAA":68427, "GGAAT":47929, "GGAAC":51024, "GGAAG":68060, "GGATA":38178, "GGATT":51361, "GGATC":42459, "GGATG":57498, "GGACA":38787, "GGACT":30447, "GGACC":36154, "GGACG":38624, "GGAGA":82160, "GGAGT":35595, "GGAGC":52752, "GGAGG":88830, "GGTAA":26365, "GGTAT":28342, "GGTAC":22362, "GGTAG":32889, "GGTTA":25711, "GGTTT":63172, "GGTTC":49095, "GGTTG":66245, "GGTCA":40014, "GGTCT":44862, "GGTCC":32928, "GGTCG":42295, "GGTGA":58038, "GGTGT":41970, "GGTGC":46133, "GGTGG":83070, "GGCAA":57309, "GGCAT":45656, "GGCAC":37276, "GGCAG":58690, "GGCTA":30946, "GGCTT":62029, "GGCTC":46990, "GGCTG":70256, "GGCCA":57246, "GGCCT":47568, "GGCCC":43818, "GGCCG":59864, "GGCGA":68234, "GGCGT":43395, "GGCGC":54275, "GGCGG":85360, "GGGAA":50910, "GGGAT":47912, "GGGAC":33676, "GGGAG":58449, "GGGTA":26027, "GGGTT":58971, "GGGTC":38766, "GGGTG":55752, "GGGCA":51125, "GGGCT":48656, "GGGCC":41748, "GGGCG":55599, "GGGGA":53993, "GGGGT":49524, "GGGGC":48004, "GGGGG":43529 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26C_S18_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26C_S18_R2_001.fastq.gz -o AM-AL-26C.trim.R1.fastq.gz -O AM-AL-26C.trim.R2.fastq.gz -m --merged_out AM-AL-26C.trim.merged.fastq.gz " }