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"CGGAC":38378, "CGGAG":69942, "CGGTA":37167, "CGGTT":50780, "CGGTC":53346, "CGGTG":67734, "CGGCA":74873, "CGGCT":77731, "CGGCC":82086, "CGGCG":104634, "CGGGA":58591, "CGGGT":49269, "CGGGC":63688, "CGGGG":67471, "GAAAA":102645, "GAAAT":67794, "GAAAC":64350, "GAAAG":83329, "GAATA":44152, "GAATT":50962, "GAATC":50604, "GAATG":45651, "GAACA":60738, "GAACT":121062, "GAACC":64406, "GAACG":45363, "GAAGA":338394, "GAAGT":53940, "GAAGC":84754, "GAAGG":90772, "GATAA":51544, "GATAT":44317, "GATAC":32096, "GATAG":46704, "GATTA":36359, "GATTT":67391, "GATTC":53742, "GATTG":55903, "GATCA":61193, "GATCT":56818, "GATCC":59544, "GATCG":325188, "GATGA":84644, "GATGT":50143, "GATGC":57483, "GATGG":77854, "GACAA":58393, "GACAT":42831, "GACAC":33772, "GACAG":47349, "GACTA":27029, "GACTT":48081, "GACTC":31925, "GACTG":39815, "GACCA":67369, "GACCT":52296, "GACCC":55669, "GACCG":53677, "GACGA":69241, "GACGT":34563, "GACGC":48695, "GACGG":55570, "GAGAA":90741, "GAGAT":127165, "GAGAC":55053, "GAGAG":60069, "GAGTA":27027, "GAGTT":48480, "GAGTC":30037, "GAGTG":29895, "GAGCA":237210, "GAGCT":48293, "GAGCC":59129, "GAGCG":48651, "GAGGA":109266, "GAGGT":63418, "GAGGC":72884, "GAGGG":64879, "GTAAA":32946, "GTAAT":28937, "GTAAC":26627, "GTAAG":26013, "GTATA":19584, "GTATT":33651, "GTATC":29009, "GTATG":28161, "GTACA":25244, "GTACT":22745, "GTACC":28629, "GTACG":25368, "GTAGA":57452, "GTAGT":28203, "GTAGC":35645, "GTAGG":35298, "GTTAA":25981, "GTTAT":31222, "GTTAC":28694, "GTTAG":25974, "GTTTA":33624, "GTTTT":74741, "GTTTC":62737, "GTTTG":63551, "GTTCA":53087, "GTTCT":58260, "GTTCC":65996, "GTTCG":48804, "GTTGA":63635, "GTTGT":60476, "GTTGC":54818, "GTTGG":79105, "GTCAA":50644, "GTCAT":42248, "GTCAC":65714, "GTCAG":46003, "GTCTA":27661, "GTCTT":54236, "GTCTC":51054, "GTCTG":143278, "GTCCA":51163, "GTCCT":52150, "GTCCC":44999, "GTCCG":38677, "GTCGA":55287, "GTCGT":47437, "GTCGC":49629, "GTCGG":52138, "GTGAA":56911, "GTGAT":51525, "GTGAC":31293, "GTGAG":41563, "GTGTA":20434, "GTGTT":44464, "GTGTC":28640, "GTGTG":34814, "GTGCA":34050, "GTGCT":45145, "GTGCC":45847, "GTGCG":37615, "GTGGA":63918, "GTGGT":69492, "GTGGC":62896, "GTGGG":72287, "GCAAA":64339, "GCAAT":45598, "GCAAC":55353, "GCAAG":62644, "GCATA":33051, "GCATT":45610, "GCATC":55870, "GCATG":40708, "GCACA":192847, "GCACT":28946, "GCACC":69449, "GCACG":38537, "GCAGA":88542, "GCAGT":39137, "GCAGC":75375, "GCAGG":89956, "GCTAA":26239, "GCTAT":37477, "GCTAC":39119, "GCTAG":26620, "GCTTA":32547, "GCTTT":67084, "GCTTC":87853, "GCTTG":65369, "GCTCA":54682, "GCTCT":51887, "GCTCC":73329, "GCTCG":54427, "GCTGA":65560, "GCTGT":54024, "GCTGC":76267, "GCTGG":102462, "GCCAA":83235, "GCCAT":61461, "GCCAC":68186, "GCCAG":93337, "GCCTA":35784, "GCCTT":68783, "GCCTC":73936, "GCCTG":78289, "GCCCA":79156, "GCCCT":64779, "GCCCC":67814, "GCCCG":67591, "GCCGA":86217, "GCCGT":64873, "GCCGC":101613, "GCCGG":89717, "GCGAA":58206, "GCGAT":57631, "GCGAC":52291, "GCGAG":56123, "GCGTA":25819, "GCGTT":41886, "GCGTC":45539, "GCGTG":40081, "GCGCA":48509, "GCGCT":52268, "GCGCC":71614, "GCGCG":52885, "GCGGA":66095, "GCGGT":61791, "GCGGC":94884, "GCGGG":75256, "GGAAA":84053, "GGAAT":56122, "GGAAC":61704, "GGAAG":310870, "GGATA":49961, "GGATT":61837, "GGATC":53747, "GGATG":72883, "GGACA":49652, "GGACT":40186, "GGACC":44774, "GGACG":51297, "GGAGA":126900, "GGAGT":44773, "GGAGC":66510, "GGAGG":112926, "GGTAA":34510, "GGTAT":34649, "GGTAC":29565, "GGTAG":49951, "GGTTA":33448, "GGTTT":75882, "GGTTC":62427, "GGTTG":85633, "GGTCA":54306, "GGTCT":57920, "GGTCC":44536, "GGTCG":55566, "GGTGA":77219, "GGTGT":51984, "GGTGC":59496, "GGTGG":107976, "GGCAA":72646, "GGCAT":57836, "GGCAC":46829, "GGCAG":82038, "GGCTA":44348, "GGCTT":79481, "GGCTC":60531, "GGCTG":91346, "GGCCA":76752, "GGCCT":63951, "GGCCC":57904, "GGCCG":80270, "GGCGA":92568, "GGCGT":57012, "GGCGC":72983, "GGCGG":112674, "GGGAA":65625, "GGGAT":61151, "GGGAC":45061, "GGGAG":83746, "GGGTA":35733, "GGGTT":75136, "GGGTC":49992, "GGGTG":71460, "GGGCA":66179, "GGGCT":63134, "GGGCC":55370, "GGGCG":72517, "GGGGA":73292, "GGGGT":68458, "GGGGC":61233, "GGGGG":188258 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1057931, "total_bases": 64533791, "q20_bases": 63039314, "q30_bases": 60003614, "total_cycles": 61, "quality_curves": { "A":[39.3037,39.2402,39.1881,39.0106,39.1041,39.1006,39.207,39.1412,39.1657,39.1681,39.1453,39.1765,39.2178,39.2086,39.1031,39.0844,39.194,39.1348,39.2422,39.1267,38.3708,39.1044,39.1634,39.1787,38.4692,39.0643,39.1102,38.2586,38.9631,37.8324,39.0839,39.1783,39.0831,39.1158,38.0711,38.977,39.0373,38.521,38.4259,39.0615,38.8629,38.6121,38.832,38.7325,38.6502,38.8051,38.802,37.9372,38.6644,38.1265,38.057,37.872,38.4487,38.3252,38.0574,37.1478,36.9037,36.506,36.4485,36.7609,35.9901], 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"GC":[0.599657,0.543503,0.588814,0.587731,0.571455,0.516787,0.522461,0.505015,0.499103,0.513466,0.514021,0.515565,0.52114,0.521443,0.524541,0.529277,0.522663,0.524148,0.527054,0.522179,0.522434,0.525982,0.526983,0.524538,0.528025,0.527443,0.524553,0.527945,0.525071,0.524431,0.524906,0.522819,0.521566,0.526542,0.526581,0.521741,0.524507,0.524453,0.524115,0.526223,0.522287,0.522886,0.528292,0.525551,0.523647,0.526475,0.526687,0.52315,0.5264,0.526288,0.526399,0.526677,0.522565,0.525222,0.527917,0.524524,0.526462,0.524922,0.527145,0.525453,0.526674,0.526138,0.530276,0.528178,0.528073,0.524463,0.532758,0.530335,0.534705,0.531322,0.532623,0.533259,0.537165,0.533092,0.536931,0.535687,0.535084,0.543505,0.540412,0.541112,0.543229,0.544625,0.547939,0.560029,0.565423,0.571429,0.582611,0.581581,0.574557,0.567457,0.575794] }, "kmer_count": { "AAAAA":82173, "AAAAT":56838, "AAAAC":58668, "AAAAG":60320, "AAATA":39089, "AAATT":42787, "AAATC":48902, "AAATG":39769, "AAACA":47716, "AAACT":38287, 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"CTTGA":47608, "CTTGT":42991, "CTTGC":42490, "CTTGG":53655, "CTCAA":43607, "CTCAT":35587, "CTCAC":31969, "CTCAG":33838, "CTCTA":25557, "CTCTT":53892, "CTCTC":42487, "CTCTG":39387, "CTCCA":64745, "CTCCT":86149, "CTCCC":60234, "CTCCG":49773, "CTCGA":41472, "CTCGT":32634, "CTCGC":39204, "CTCGG":41232, "CTGAA":44465, "CTGAT":37873, "CTGAC":30580, "CTGAG":32580, "CTGTA":18764, "CTGTT":47873, "CTGTC":29581, "CTGTG":29613, "CTGCA":43935, "CTGCT":68170, "CTGCC":59126, "CTGCG":38757, "CTGGA":59233, "CTGGT":53960, "CTGGC":58299, "CTGGG":54646, "CCAAA":66838, "CCAAT":42371, "CCAAC":65019, "CCAAG":52614, "CCATA":32457, "CCATT":39833, "CCATC":59978, "CCATG":40884, "CCACA":53482, "CCACT":31972, "CCACC":92811, "CCACG":41940, "CCAGA":56632, "CCAGT":41208, "CCAGC":78179, "CCAGG":59322, "CCTAA":21322, "CCTAT":24559, "CCTAC":28785, "CCTAG":15091, "CCTTA":22095, "CCTTT":57635, "CCTTC":72575, "CCTTG":57244, "CCTCA":50341, "CCTCT":50677, "CCTCC":92744, "CCTCG":51238, "CCTGA":45040, "CCTGT":42768, "CCTGC":74806, "CCTGG":60255, "CCCAA":65329, "CCCAT":43610, "CCCAC":61936, "CCCAG":58969, "CCCTA":24820, "CCCTT":47158, "CCCTC":53537, "CCCTG":49640, "CCCCA":66206, "CCCCT":47801, "CCCCC":49814, "CCCCG":50086, "CCCGA":41359, "CCCGT":30988, "CCCGC":60045, "CCCGG":49467, "CCGAA":44725, "CCGAT":40581, "CCGAC":41958, "CCGAG":42214, "CCGTA":22929, "CCGTT":33099, "CCGTC":42738, "CCGTG":32078, "CCGCA":46411, "CCGCT":47218, "CCGCC":89942, "CCGCG":46528, "CCGGA":45932, "CCGGT":42433, "CCGGC":64441, "CCGGG":46894, "CGAAA":43883, "CGAAT":28560, "CGAAC":33770, "CGAAG":49617, "CGATA":27166, "CGATT":35876, "CGATC":43455, "CGATG":50083, "CGACA":34686, "CGACT":29752, "CGACC":46264, "CGACG":46529, "CGAGA":39165, "CGAGT":22636, "CGAGC":37371, "CGAGG":47500, "CGTAA":20017, "CGTAT":16226, "CGTAC":16226, "CGTAG":23216, "CGTTA":15266, "CGTTT":33183, "CGTTC":34350, "CGTTG":35006, "CGTCA":32200, "CGTCT":33266, "CGTCC":37451, "CGTCG":43239, "CGTGA":27022, "CGTGT":17843, "CGTGC":25956, "CGTGG":37150, "CGCAA":33164, "CGCAT":25970, "CGCAC":30002, "CGCAG":37406, "CGCTA":17986, "CGCTT":39101, "CGCTC":39219, "CGCTG":46284, "CGCCA":60522, "CGCCT":56156, "CGCCC":58266, "CGCCG":75387, "CGCGA":32207, "CGCGT":23163, "CGCGC":39255, "CGCGG":44675, "CGGAA":42077, "CGGAT":34789, "CGGAC":26019, "CGGAG":43718, "CGGTA":24293, "CGGTT":37407, "CGGTC":38250, "CGGTG":47286, "CGGCA":50354, "CGGCT":55488, "CGGCC":57145, "CGGCG":70859, "CGGGA":39421, "CGGGT":35311, "CGGGC":43244, "CGGGG":43878, "GAAAA":73285, "GAAAT":49752, "GAAAC":46635, "GAAAG":52839, "GAATA":31767, "GAATT":38745, "GAATC":37637, "GAATG":33174, "GAACA":41394, "GAACT":36485, "GAACC":45205, "GAACG":31732, "GAAGA":75242, "GAAGT":37487, "GAAGC":58678, "GAAGG":61229, "GATAA":36601, "GATAT":31767, "GATAC":22906, "GATAG":28634, "GATTA":26435, "GATTT":51467, "GATTC":39066, "GATTG":40219, "GATCA":41549, "GATCT":42347, "GATCC":41875, "GATCG":38780, "GATGA":58874, "GATGT":35786, "GATGC":40503, "GATGG":55855, "GACAA":40168, "GACAT":29748, "GACAC":23966, "GACAG":29065, "GACTA":17625, "GACTT":35335, "GACTC":22370, "GACTG":27093, "GACCA":46094, "GACCT":36385, "GACCC":39800, "GACCG":38521, "GACGA":47996, "GACGT":23653, "GACGC":33907, "GACGG":38261, "GAGAA":62105, "GAGAT":45510, "GAGAC":38773, "GAGAG":38678, "GAGTA":18619, "GAGTT":34814, "GAGTC":21154, "GAGTG":21022, "GAGCA":42806, "GAGCT":31586, "GAGCC":41281, "GAGCG":33289, "GAGGA":76383, "GAGGT":41995, "GAGGC":49139, "GAGGG":43897, "GTAAA":23658, "GTAAT":21104, "GTAAC":17635, "GTAAG":15210, "GTATA":13657, "GTATT":25030, "GTATC":21011, "GTATG":20630, "GTACA":16856, "GTACT":15698, "GTACC":19687, "GTACG":16864, "GTAGA":27441, "GTAGT":20189, "GTAGC":24703, "GTAGG":23582, "GTTAA":18477, "GTTAT":23085, "GTTAC":20848, "GTTAG":15282, "GTTTA":24131, "GTTTT":57510, "GTTTC":47394, "GTTTG":48432, "GTTCA":36956, "GTTCT":42931, "GTTCC":48541, "GTTCG":34797, "GTTGA":45381, "GTTGT":43234, "GTTGC":39845, "GTTGG":59990, "GTCAA":34580, "GTCAT":30503, "GTCAC":23930, "GTCAG":27720, "GTCTA":18404, "GTCTT":39965, "GTCTC":38658, "GTCTG":33577, "GTCCA":35325, "GTCCT":37785, "GTCCC":32811, "GTCCG":26657, "GTCGA":36785, "GTCGT":32081, "GTCGC":35053, "GTCGG":36664, "GTGAA":38150, "GTGAT":34592, "GTGAC":21768, "GTGAG":26010, "GTGTA":13787, "GTGTT":33447, "GTGTC":20379, "GTGTG":25181, "GTGCA":23160, "GTGCT":32535, "GTGCC":32261, "GTGCG":26005, "GTGGA":43289, "GTGGT":51893, "GTGGC":44452, "GTGGG":49497, "GCAAA":43747, "GCAAT":32913, "GCAAC":39603, "GCAAG":38370, "GCATA":22464, "GCATT":33570, "GCATC":39010, "GCATG":28737, "GCACA":26923, "GCACT":20648, "GCACC":48309, "GCACG":26738, "GCAGA":43292, "GCAGT":27685, "GCAGC":52852, "GCAGG":61887, "GCTAA":17390, "GCTAT":25951, "GCTAC":27264, "GCTAG":14722, "GCTTA":21591, "GCTTT":49511, "GCTTC":64239, "GCTTG":48018, "GCTCA":37782, "GCTCT":37380, "GCTCC":52750, "GCTCG":38459, "GCTGA":45017, "GCTGT":36944, "GCTGC":54236, "GCTGG":73119, "GCCAA":56697, "GCCAT":43406, "GCCAC":47976, "GCCAG":57218, "GCCTA":23565, "GCCTT":49414, "GCCTC":54438, "GCCTG":55413, "GCCCA":54714, "GCCCT":46327, "GCCCC":49330, "GCCCG":46310, "GCCGA":58139, "GCCGT":44328, "GCCGC":69881, "GCCGG":60339, "GCGAA":37943, "GCGAT":39287, "GCGAC":36070, "GCGAG":34916, "GCGTA":17082, "GCGTT":29467, "GCGTC":31351, "GCGTG":27709, "GCGCA":31953, "GCGCT":34668, "GCGCC":50094, "GCGCG":36665, "GCGGA":43506, "GCGGT":44739, "GCGGC":65558, "GCGGG":51143, "GGAAA":57837, "GGAAT":41720, "GGAAC":44007, "GGAAG":57910, "GGATA":33639, "GGATT":45931, "GGATC":38696, "GGATG":50893, "GGACA":32455, "GGACT":26702, "GGACC":31491, "GGACG":34295, "GGAGA":70362, "GGAGT":31166, "GGAGC":45734, "GGAGG":77000, "GGTAA":22301, "GGTAT":25210, "GGTAC":19798, "GGTAG":29060, "GGTTA":22891, "GGTTT":58202, "GGTTC":45439, "GGTTG":63566, "GGTCA":35996, "GGTCT":42585, "GGTCC":31282, "GGTCG":39230, "GGTGA":49962, "GGTGT":38450, "GGTGC":42167, "GGTGG":78279, "GGCAA":48500, "GGCAT":40146, "GGCAC":32415, "GGCAG":50368, "GGCTA":29289, "GGCTT":57317, "GGCTC":43473, "GGCTG":64709, "GGCCA":49695, "GGCCT":43943, "GGCCC":39705, "GGCCG":53250, "GGCGA":60483, "GGCGT":39083, "GGCGC":48021, "GGCGG":77847, "GGGAA":44018, "GGGAT":43137, "GGGAC":28604, "GGGAG":50018, "GGGTA":23201, "GGGTT":55222, "GGGTC":35916, "GGGTG":50504, "GGGCA":43775, "GGGCT":45115, "GGGCC":37073, "GGGCG":49479, "GGGGA":47226, "GGGGT":47085, "GGGGC":42935, "GGGGG":39842 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26B_S17_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26B_S17_R2_001.fastq.gz -o AM-AL-26B.trim.R1.fastq.gz -O AM-AL-26B.trim.R2.fastq.gz -m --merged_out AM-AL-26B.trim.merged.fastq.gz " }