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"GCGCT":44729, "GCGCC":63346, "GCGCG":48455, "GCGGA":61774, "GCGGT":54863, "GCGGC":84659, "GCGGG":67543, "GGAAA":82201, "GGAAT":53629, "GGAAC":59116, "GGAAG":366068, "GGATA":47034, "GGATT":56237, "GGATC":49314, "GGATG":67452, "GGACA":47267, "GGACT":37751, "GGACC":41684, "GGACG":46698, "GGAGA":130909, "GGAGT":41633, "GGAGC":63053, "GGAGG":108228, "GGTAA":33114, "GGTAT":31676, "GGTAC":25681, "GGTAG":48510, "GGTTA":31254, "GGTTT":67478, "GGTTC":54121, "GGTTG":73415, "GGTCA":48488, "GGTCT":49823, "GGTCC":38263, "GGTCG":48430, "GGTGA":71163, "GGTGT":44751, "GGTGC":52506, "GGTGG":92587, "GGCAA":68201, "GGCAT":51430, "GGCAC":42145, "GGCAG":79253, "GGCTA":39691, "GGCTT":69533, "GGCTC":51983, "GGCTG":80458, "GGCCA":69357, "GGCCT":55334, "GGCCC":49895, "GGCCG":71138, "GGCGA":85760, "GGCGT":49899, "GGCGC":64898, "GGCGG":101556, "GGGAA":63344, "GGGAT":56481, "GGGAC":42717, "GGGAG":82974, "GGGTA":32638, "GGGTT":64306, "GGGTC":43118, "GGGTG":61045, "GGGCA":62193, "GGGCT":55245, "GGGCC":48754, "GGGCG":65255, "GGGGA":70243, "GGGGT":57243, "GGGGC":55597, "GGGGG":280853 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1001014, "total_bases": 61061854, "q20_bases": 59360608, "q30_bases": 56342771, "total_cycles": 61, "quality_curves": { "A":[39.4462,39.1815,39.04,38.9894,38.9648,39.2018,39.2238,39.1578,39.1839,39.1881,39.1781,39.1518,39.1978,39.1681,39.1222,39.109,39.2117,39.1234,39.2101,39.0999,38.1449,39.0765,39.1685,39.1737,38.2062,39.0672,39.0763,37.8643,38.9398,37.2874,39.0783,39.1652,39.0581,38.3541,38.9948,38.6619,37.7815,38.1569,37.6222,39.0156,38.4642,38.6893,38.7752,38.6209,38.5796,38.7418,38.6908,37.0992,38.4955,37.8732,37.6813,37.4077,38.1748,37.9877,37.6768,36.6225,36.2963,35.8569,35.697,36.0883,35.1258], 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"GC":[0.589155,0.537861,0.581503,0.575755,0.562525,0.516038,0.518492,0.503083,0.49887,0.510701,0.513562,0.514127,0.520427,0.52275,0.522653,0.526363,0.523656,0.52168,0.524137,0.523255,0.524379,0.527422,0.524674,0.521205,0.526662,0.525676,0.522421,0.52435,0.523847,0.521451,0.526216,0.524428,0.521488,0.522321,0.525658,0.518386,0.524048,0.5215,0.520654,0.521538,0.520551,0.519359,0.523148,0.521236,0.521794,0.522525,0.521114,0.518842,0.52302,0.523729,0.521582,0.520378,0.521406,0.520503,0.524152,0.519959,0.520844,0.522403,0.520874,0.523577,0.522755,0.519437,0.523848,0.528467,0.525575,0.523624,0.523956,0.524336,0.52581,0.525003,0.52939,0.528735,0.529461,0.529993,0.527158,0.531911,0.531019,0.535269,0.537451,0.535264,0.536758,0.538105,0.544416,0.553206,0.555306,0.560394,0.566499,0.575615,0.568555,0.558453,0.555041] }, "kmer_count": { "AAAAA":84415, "AAAAT":57534, "AAAAC":59433, "AAAAG":61776, "AAATA":37727, "AAATT":42328, "AAATC":47372, "AAATG":41201, "AAACA":48503, "AAACT":37896, "AAACC":61016, 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"CTTGT":38924, "CTTGC":38932, "CTTGG":48485, "CTCAA":42222, "CTCAT":33407, "CTCAC":28825, "CTCAG":32280, "CTCTA":23189, "CTCTT":49496, "CTCTC":37863, "CTCTG":35536, "CTCCA":59388, "CTCCT":73236, "CTCCC":53080, "CTCCG":43453, "CTCGA":38936, "CTCGT":30306, "CTCGC":35226, "CTCGG":38151, "CTGAA":43643, "CTGAT":35844, "CTGAC":29643, "CTGAG":31932, "CTGTA":17461, "CTGTT":42911, "CTGTC":27437, "CTGTG":27234, "CTGCA":39660, "CTGCT":59135, "CTGCC":53006, "CTGCG":35934, "CTGGA":58842, "CTGGT":49378, "CTGGC":54309, "CTGGG":51482, "CCAAA":66439, "CCAAT":39274, "CCAAC":65508, "CCAAG":52158, "CCATA":30796, "CCATT":38328, "CCATC":56069, "CCATG":38563, "CCACA":52873, "CCACT":30464, "CCACC":90180, "CCACG":39619, "CCAGA":54871, "CCAGT":38057, "CCAGC":74372, "CCAGG":56351, "CCTAA":20386, "CCTAT":23077, "CCTAC":26861, "CCTAG":14631, "CCTTA":20740, "CCTTT":51536, "CCTTC":64726, "CCTTG":50828, "CCTCA":47139, "CCTCT":45328, "CCTCC":78929, "CCTCG":46388, "CCTGA":42727, "CCTGT":36940, "CCTGC":64813, "CCTGG":55305, "CCCAA":62966, "CCCAT":40663, "CCCAC":60876, "CCCAG":55940, "CCCTA":24167, "CCCTT":41756, "CCCTC":48671, "CCCTG":44635, "CCCCA":62907, "CCCCT":42416, "CCCCC":45877, "CCCCG":46848, "CCCGA":40372, "CCCGT":27593, "CCCGC":54139, "CCCGG":46946, "CCGAA":44132, "CCGAT":39535, "CCGAC":39938, "CCGAG":41768, "CCGTA":21858, "CCGTT":30369, "CCGTC":38570, "CCGTG":29613, "CCGCA":43693, "CCGCT":42776, "CCGCC":81876, "CCGCG":43133, "CCGGA":46907, "CCGGT":38308, "CCGGC":58708, "CCGGG":44720, "CGAAA":43529, "CGAAT":27690, "CGAAC":32812, "CGAAG":50038, "CGATA":26009, "CGATT":34474, "CGATC":40993, "CGATG":48743, "CGACA":33695, "CGACT":27411, "CGACC":44754, "CGACG":44382, "CGAGA":39555, "CGAGT":21509, "CGAGC":36758, "CGAGG":47056, "CGTAA":19958, "CGTAT":15713, "CGTAC":15677, "CGTAG":21601, "CGTTA":14359, "CGTTT":30800, "CGTTC":31008, "CGTTG":32461, "CGTCA":29826, "CGTCT":30522, "CGTCC":33509, "CGTCG":39823, "CGTGA":26668, "CGTGT":16774, "CGTGC":23443, "CGTGG":35360, "CGCAA":32256, "CGCAT":25032, "CGCAC":27822, "CGCAG":36237, "CGCTA":16027, "CGCTT":35684, "CGCTC":35980, "CGCTG":42773, "CGCCA":56549, "CGCCT":50654, "CGCCC":53676, "CGCCG":69783, "CGCGA":31470, "CGCGT":21272, "CGCGC":36609, "CGCGG":42239, "CGGAA":42685, "CGGAT":33809, "CGGAC":25332, "CGGAG":45385, "CGGTA":23390, "CGGTT":34542, "CGGTC":35012, "CGGTG":43683, "CGGCA":47221, "CGGCT":49004, "CGGCC":52252, "CGGCG":67868, "CGGGA":40022, "CGGGT":32315, "CGGGC":40957, "CGGGG":41977, "GAAAA":76432, "GAAAT":49994, "GAAAC":47014, "GAAAG":53179, "GAATA":30748, "GAATT":37955, "GAATC":37158, "GAATG":32984, "GAACA":41642, "GAACT":36024, "GAACC":44148, "GAACG":31556, "GAAGA":76779, "GAAGT":38528, "GAAGC":59708, "GAAGG":63450, "GATAA":34556, "GATAT":32102, "GATAC":22297, "GATAG":28336, "GATTA":26317, "GATTT":50138, "GATTC":38275, "GATTG":38388, "GATCA":40828, "GATCT":39841, "GATCC":38764, "GATCG":37978, "GATGA":61005, "GATGT":34625, "GATGC":39370, "GATGG":54830, "GACAA":40627, "GACAT":29203, "GACAC":23768, "GACAG":28857, "GACTA":17083, "GACTT":33403, "GACTC":21273, "GACTG":26902, "GACCA":45183, "GACCT":34856, "GACCC":39617, "GACCG":38111, "GACGA":47545, "GACGT":22752, "GACGC":32363, "GACGG":37460, "GAGAA":64717, "GAGAT":46404, "GAGAC":39319, "GAGAG":39299, "GAGTA":18163, "GAGTT":34214, "GAGTC":20252, "GAGTG":20554, "GAGCA":43556, "GAGCT":32002, "GAGCC":40338, "GAGCG":33144, "GAGGA":79724, "GAGGT":40440, "GAGGC":49081, "GAGGG":44498, "GTAAA":23701, "GTAAT":20371, "GTAAC":17759, "GTAAG":15627, "GTATA":13378, "GTATT":24044, "GTATC":20442, "GTATG":19395, "GTACA":16443, "GTACT":15231, "GTACC":18481, "GTACG":15353, "GTAGA":26932, "GTAGT":19370, "GTAGC":23513, "GTAGG":22980, "GTTAA":17847, "GTTAT":22648, "GTTAC":18476, "GTTAG":14957, "GTTTA":22679, "GTTTT":54245, "GTTTC":43220, "GTTTG":45333, "GTTCA":34923, "GTTCT":39696, "GTTCC":42858, "GTTCG":31938, "GTTGA":43178, "GTTGT":40621, "GTTGC":35811, "GTTGG":54004, "GTCAA":32744, "GTCAT":27989, "GTCAC":22362, "GTCAG":26195, "GTCTA":17476, "GTCTT":37456, "GTCTC":34950, "GTCTG":31129, "GTCCA":33891, "GTCCT":33220, "GTCCC":29329, "GTCCG":24025, "GTCGA":34543, "GTCGT":30741, "GTCGC":32461, "GTCGG":33685, "GTGAA":38429, "GTGAT":33492, "GTGAC":21567, "GTGAG":25817, "GTGTA":13687, "GTGTT":30350, "GTGTC":19426, "GTGTG":23334, "GTGCA":22503, "GTGCT":29537, "GTGCC":29447, "GTGCG":24316, "GTGGA":43227, "GTGGT":46749, "GTGGC":41887, "GTGGG":45488, "GCAAA":43330, "GCAAT":32781, "GCAAC":39059, "GCAAG":38174, "GCATA":22354, "GCATT":32420, "GCATC":36946, "GCATG":28314, "GCACA":26422, "GCACT":19479, "GCACC":44382, "GCACG":25145, "GCAGA":42952, "GCAGT":27026, "GCAGC":51803, "GCAGG":63001, "GCTAA":17193, "GCTAT":24162, "GCTAC":24510, "GCTAG":14304, "GCTTA":20518, "GCTTT":46877, "GCTTC":58059, "GCTTG":43880, "GCTCA":35012, "GCTCT":33757, "GCTCC":46338, "GCTCG":35645, "GCTGA":44125, "GCTGT":33946, "GCTGC":48882, "GCTGG":68219, "GCCAA":55771, "GCCAT":41113, "GCCAC":46542, "GCCAG":54487, "GCCTA":22301, "GCCTT":45004, "GCCTC":48778, "GCCTG":50252, "GCCCA":52349, "GCCCT":42149, "GCCCC":44850, "GCCCG":42709, "GCCGA":56808, "GCCGT":41476, "GCCGC":64798, "GCCGG":57017, "GCGAA":38357, "GCGAT":38398, "GCGAC":35718, "GCGAG":34833, "GCGTA":16002, "GCGTT":28015, "GCGTC":29107, "GCGTG":25894, "GCGCA":31238, "GCGCT":31999, "GCGCC":47046, "GCGCG":35561, "GCGGA":43950, "GCGGT":41604, "GCGGC":62241, "GCGGG":48835, "GGAAA":60271, "GGAAT":42043, "GGAAC":44889, "GGAAG":60132, "GGATA":33204, "GGATT":44428, "GGATC":37716, "GGATG":50377, "GGACA":33533, "GGACT":25819, "GGACC":31517, "GGACG":33719, "GGAGA":74767, "GGAGT":31427, "GGAGC":46645, "GGAGG":79347, "GGTAA":22936, "GGTAT":24397, "GGTAC":18405, "GGTAG":28818, "GGTTA":22030, "GGTTT":53493, "GGTTC":41557, "GGTTG":56350, "GGTCA":33771, "GGTCT":38298, "GGTCC":28441, "GGTCG":36323, "GGTGA":49271, "GGTGT":34620, "GGTGC":39385, "GGTGG":70473, "GGCAA":48466, "GGCAT":38344, "GGCAC":30936, "GGCAG":49965, "GGCTA":27474, "GGCTT":52525, "GGCTC":39314, "GGCTG":60187, "GGCCA":48024, "GGCCT":40029, "GGCCC":36324, "GGCCG":51091, "GGCGA":60687, "GGCGT":36440, "GGCGC":46146, "GGCGG":74899, "GGGAA":45437, "GGGAT":42579, "GGGAC":29535, "GGGAG":51335, "GGGTA":22284, "GGGTT":49376, "GGGTC":32867, "GGGTG":45482, "GGGCA":43457, "GGGCT":41517, "GGGCC":35328, "GGGCG":48203, "GGGGA":48054, "GGGGT":42177, "GGGGC":41724, "GGGGG":37677 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26A_S16_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-26A_S16_R2_001.fastq.gz -o AM-AL-26A.trim.R1.fastq.gz -O AM-AL-26A.trim.R2.fastq.gz -m --merged_out AM-AL-26A.trim.merged.fastq.gz " }