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"GAGTA":22496, "GAGTT":41847, "GAGTC":25277, "GAGTG":24281, "GAGCA":546762, "GAGCT":37551, "GAGCC":48104, "GAGCG":40688, "GAGGA":93624, "GAGGT":48671, "GAGGC":56910, "GAGGG":50462, "GTAAA":28082, "GTAAT":59181, "GTAAC":20025, "GTAAG":23947, "GTATA":15656, "GTATT":29538, "GTATC":25236, "GTATG":23254, "GTACA":20632, "GTACT":19083, "GTACC":23404, "GTACG":18766, "GTAGA":88243, "GTAGT":23463, "GTAGC":28124, "GTAGG":27182, "GTTAA":20232, "GTTAT":27986, "GTTAC":23423, "GTTAG":32082, "GTTTA":31740, "GTTTT":73699, "GTTTC":59203, "GTTTG":62439, "GTTCA":46416, "GTTCT":53072, "GTTCC":60267, "GTTCG":43681, "GTTGA":57356, "GTTGT":57208, "GTTGC":51076, "GTTGG":79175, "GTCAA":42016, "GTCAT":36747, "GTCAC":118075, "GTCAG":43075, "GTCTA":24589, "GTCTT":49421, "GTCTC":46427, "GTCTG":344896, "GTCCA":45660, "GTCCT":43994, "GTCCC":35831, "GTCCG":31478, "GTCGA":50710, "GTCGT":40823, "GTCGC":45211, "GTCGG":48210, "GTGAA":49491, "GTGAT":43596, "GTGAC":26452, "GTGAG":39453, "GTGTA":18235, "GTGTT":42070, "GTGTC":24902, "GTGTG":33117, "GTGCA":31665, "GTGCT":42060, "GTGCC":40021, "GTGCG":32339, "GTGGA":56486, "GTGGT":71104, "GTGGC":55917, "GTGGG":61887, "GCAAA":55149, "GCAAT":40438, "GCAAC":48842, "GCAAG":59010, "GCATA":29949, "GCATT":39964, "GCATC":46472, "GCATG":36600, "GCACA":479688, "GCACT":24149, "GCACC":60586, "GCACG":32778, "GCAGA":109058, "GCAGT":33762, "GCAGC":68388, "GCAGG":81950, "GCTAA":21666, "GCTAT":28515, "GCTAC":29982, "GCTAG":32892, "GCTTA":28202, "GCTTT":61059, "GCTTC":78498, "GCTTG":59889, "GCTCA":46246, "GCTCT":43688, "GCTCC":61260, "GCTCG":50505, "GCTGA":57910, "GCTGT":45858, "GCTGC":72606, "GCTGG":94106, "GCCAA":73736, "GCCAT":51999, "GCCAC":59189, "GCCAG":89217, "GCCTA":30527, "GCCTT":59028, "GCCTC":62486, "GCCTG":70520, "GCCCA":70392, "GCCCT":51837, "GCCCC":57988, "GCCCG":57022, "GCCGA":78041, "GCCGT":53473, "GCCGC":87350, "GCCGG":77928, "GCGAA":52051, "GCGAT":48829, "GCGAC":46563, "GCGAG":52798, "GCGTA":22204, "GCGTT":37276, "GCGTC":37696, "GCGTG":34359, "GCGCA":45540, "GCGCT":44435, "GCGCC":64119, "GCGCG":48947, "GCGGA":57956, "GCGGT":59602, "GCGGC":83417, "GCGGG":63121, "GGAAA":74351, "GGAAT":50025, "GGAAC":53149, "GGAAG":657435, "GGATA":44988, "GGATT":57502, "GGATC":46673, "GGATG":61562, "GGACA":40971, "GGACT":32005, "GGACC":35326, "GGACG":41034, "GGAGA":135479, "GGAGT":35677, "GGAGC":52047, "GGAGG":91581, "GGTAA":70020, "GGTAT":30503, "GGTAC":23662, "GGTAG":54599, "GGTTA":31244, "GGTTT":78553, "GGTTC":55675, "GGTTG":84116, "GGTCA":47340, "GGTCT":52295, "GGTCC":35619, "GGTCG":53557, "GGTGA":65232, "GGTGT":48695, "GGTGC":54933, "GGTGG":104866, "GGCAA":63910, "GGCAT":49566, "GGCAC":39502, "GGCAG":81835, "GGCTA":35974, "GGCTT":69983, "GGCTC":50119, "GGCTG":80592, "GGCCA":65936, "GGCCT":52951, "GGCCC":46787, "GGCCG":68430, "GGCGA":81150, "GGCGT":47360, "GGCGC":62906, "GGCGG":101383, "GGGAA":54447, "GGGAT":50493, "GGGAC":32996, "GGGAG":69824, "GGGTA":30932, "GGGTT":71567, "GGGTC":43202, "GGGTG":62667, "GGGCA":56913, "GGGCT":55305, "GGGCC":45033, "GGGCG":61234, "GGGGA":58680, "GGGGT":60570, "GGGGC":51454, "GGGGG":272898 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1089138, "total_bases": 66437418, "q20_bases": 63987175, "q30_bases": 60433483, "total_cycles": 61, "quality_curves": { "A":[39.4585,39.2163,39.0526,39.0091,39.0565,39.1495,39.2438,39.1687,39.1779,39.2195,39.2054,39.1937,39.2361,39.1988,39.1299,39.1349,39.2405,39.191,39.2677,39.1578,38.2265,39.1224,39.1873,39.2206,38.2902,39.0989,39.1655,38.0137,38.9453,37.3718,39.1055,39.1859,39.0758,39.1314,39.0008,39.0317,39.0123,37.6686,38.865,38.9422,38.7141,38.4861,38.4652,38.1801,38.096,38.3819,38.3143,36.6309,37.7323,36.7698,36.47,36.1251,37.0753,36.7561,36.264,34.7851,34.5388,34.0054,33.6991,34.0042,33.0309], 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"GC":[0.562172,0.528463,0.568536,0.563502,0.564724,0.514332,0.524255,0.50945,0.501962,0.51356,0.519887,0.514305,0.5239,0.527772,0.522525,0.530661,0.530495,0.523296,0.528236,0.529557,0.523424,0.531655,0.530855,0.52238,0.52814,0.528192,0.520497,0.527145,0.530208,0.522301,0.526659,0.528302,0.520525,0.52664,0.528191,0.522399,0.525884,0.52576,0.520077,0.524013,0.527317,0.518779,0.52343,0.525349,0.520977,0.523099,0.525874,0.521034,0.524811,0.526851,0.520068,0.524219,0.525318,0.521826,0.52536,0.526353,0.523223,0.526372,0.526739,0.522655,0.527745,0.526707,0.522593,0.527976,0.531591,0.52164,0.529343,0.529565,0.523406,0.533177,0.527735,0.527107,0.535805,0.536332,0.525922,0.534759,0.536471,0.533703,0.53816,0.537851,0.53422,0.551777,0.55045,0.542415,0.553279,0.563516,0.571364,0.562043,0.566032,0.533171,0.486378] }, "kmer_count": { "AAAAA":90535, "AAAAT":61468, "AAAAC":63852, "AAAAG":62143, "AAATA":39069, "AAATT":45801, "AAATC":56171, "AAATG":41964, "AAACA":50178, "AAACT":38031, "AAACC":72211, 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"CTTGT":46441, "CTTGC":45418, "CTTGG":58736, "CTCAA":46591, "CTCAT":37611, "CTCAC":33164, "CTCAG":34026, "CTCTA":24297, "CTCTT":55430, "CTCTC":45067, "CTCTG":42710, "CTCCA":66753, "CTCCT":94439, "CTCCC":60589, "CTCCG":49695, "CTCGA":44634, "CTCGT":36950, "CTCGC":41557, "CTCGG":46504, "CTGAA":45590, "CTGAT":40879, "CTGAC":32114, "CTGAG":33127, "CTGTA":17699, "CTGTT":52647, "CTGTC":31420, "CTGTG":31967, "CTGCA":45876, "CTGCT":85009, "CTGCC":63128, "CTGCG":43039, "CTGGA":59233, "CTGGT":61904, "CTGGC":61949, "CTGGG":57914, "CCAAA":76762, "CCAAT":44491, "CCAAC":78693, "CCAAG":56358, "CCATA":31737, "CCATT":44819, "CCATC":61984, "CCATG":42573, "CCACA":56749, "CCACT":32093, "CCACC":108421, "CCACG":42088, "CCAGA":57522, "CCAGT":42665, "CCAGC":84566, "CCAGG":58226, "CCTAA":20510, "CCTAT":24914, "CCTAC":27957, "CCTAG":15204, "CCTTA":20245, "CCTTT":61169, "CCTTC":74110, "CCTTG":57212, "CCTCA":52736, "CCTCT":49723, "CCTCC":96930, "CCTCG":54405, "CCTGA":46025, "CCTGT":45619, "CCTGC":86972, "CCTGG":62020, "CCCAA":74562, "CCCAT":44271, "CCCAC":65660, "CCCAG":60319, "CCCTA":23539, "CCCTT":46334, "CCCTC":54773, "CCCTG":50183, "CCCCA":72382, "CCCCT":48118, "CCCCC":50109, "CCCCG":50718, "CCCGA":43225, "CCCGT":31507, "CCCGC":60463, "CCCGG":51353, "CCGAA":47727, "CCGAT":44009, "CCGAC":45093, "CCGAG":46154, "CCGTA":23465, "CCGTT":35956, "CCGTC":44516, "CCGTG":32834, "CCGCA":46438, "CCGCT":47753, "CCGCC":95437, "CCGCG":50683, "CCGGA":45197, "CCGGT":47828, "CCGGC":69896, "CCGGG":48978, "CGAAA":45728, "CGAAT":32039, "CGAAC":35777, "CGAAG":51527, "CGATA":27977, "CGATT":38770, "CGATC":48031, "CGATG":53500, "CGACA":35746, "CGACT":30949, "CGACC":52107, "CGACG":50263, "CGAGA":42014, "CGAGT":24782, "CGAGC":41385, "CGAGG":47890, "CGTAA":19861, "CGTAT":17126, "CGTAC":15928, "CGTAG":21948, "CGTTA":15131, "CGTTT":35835, "CGTTC":37476, "CGTTG":38556, "CGTCA":32757, "CGTCT":34542, "CGTCC":39278, "CGTCG":47454, "CGTGA":29933, "CGTGT":19386, "CGTGC":27086, "CGTGG":38703, "CGCAA":34907, "CGCAT":27096, "CGCAC":30031, "CGCAG":39857, "CGCTA":17392, "CGCTT":41305, "CGCTC":39868, "CGCTG":49238, "CGCCA":62239, "CGCCT":60018, "CGCCC":58837, "CGCCG":81654, "CGCGA":35099, "CGCGT":24043, "CGCGC":42822, "CGCGG":49590, "CGGAA":44220, "CGGAT":37982, "CGGAC":25606, "CGGAG":42397, "CGGTA":25687, "CGGTT":43828, "CGGTC":42621, "CGGTG":55215, "CGGCA":53674, "CGGCT":56763, "CGGCC":60471, "CGGCG":78527, "CGGGA":40723, "CGGGT":38414, "CGGGC":45974, "CGGGG":45122, "GAAAA":79610, "GAAAT":54250, "GAAAC":48491, "GAAAG":52810, "GAATA":32344, "GAATT":44406, "GAATC":40730, "GAATG":35896, "GAACA":43037, "GAACT":38051, "GAACC":49339, "GAACG":33629, "GAAGA":76400, "GAAGT":38700, "GAAGC":61942, "GAAGG":60783, "GATAA":36053, "GATAT":33923, "GATAC":23260, "GATAG":28303, "GATTA":26624, "GATTT":63425, "GATTC":43640, "GATTG":43105, "GATCA":44957, "GATCT":48680, "GATCC":42983, "GATCG":43851, "GATGA":67753, "GATGT":38174, "GATGC":42613, "GATGG":60043, "GACAA":41604, "GACAT":31429, "GACAC":23406, "GACAG":28359, "GACTA":16966, "GACTT":38684, "GACTC":23965, "GACTG":26535, "GACCA":49210, "GACCT":36493, "GACCC":41293, "GACCG":42938, "GACGA":50263, "GACGT":25029, "GACGC":33949, "GACGG":41093, "GAGAA":64831, "GAGAT":50516, "GAGAC":38920, "GAGAG":37359, "GAGTA":17290, "GAGTT":36754, "GAGTC":22196, "GAGTG":20985, "GAGCA":47009, "GAGCT":32326, "GAGCC":41591, "GAGCG":34035, "GAGGA":78466, "GAGGT":41862, "GAGGC":49189, "GAGGG":43197, "GTAAA":24228, "GTAAT":21106, "GTAAC":17384, "GTAAG":15101, "GTATA":12580, "GTATT":26695, "GTATC":22522, "GTATG":20767, "GTACA":16869, "GTACT":16827, "GTACC":20307, "GTACG":16331, "GTAGA":26018, "GTAGT":20775, "GTAGC":24836, "GTAGG":23604, "GTTAA":17219, "GTTAT":25447, "GTTAC":20677, "GTTAG":14826, "GTTTA":24844, "GTTTT":66734, "GTTTC":52765, "GTTTG":56117, "GTTCA":39125, "GTTCT":47658, "GTTCC":53358, "GTTCG":38155, "GTTGA":48743, "GTTGT":51043, "GTTGC":45102, "GTTGG":70780, "GTCAA":34626, "GTCAT":32330, "GTCAC":24636, "GTCAG":28416, "GTCTA":18580, "GTCTT":43995, "GTCTC":42318, "GTCTG":35165, "GTCCA":37458, "GTCCT":38720, "GTCCC":31714, "GTCCG":27150, "GTCGA":41333, "GTCGT":35035, "GTCGC":39120, "GTCGG":40983, "GTGAA":40638, "GTGAT":37794, "GTGAC":22600, "GTGAG":27999, "GTGTA":13472, "GTGTT":37584, "GTGTC":21653, "GTGTG":28620, "GTGCA":25204, "GTGCT":36573, "GTGCC":34671, "GTGCG":27450, "GTGGA":46256, "GTGGT":61844, "GTGGC":48615, "GTGGG":52970, "GCAAA":45557, "GCAAT":35529, "GCAAC":42283, "GCAAG":39558, "GCATA":23170, "GCATT":35641, "GCATC":40443, "GCATG":31545, "GCACA":28055, "GCACT":20839, "GCACC":51867, "GCACG":27464, "GCAGA":45154, "GCAGT":29774, "GCAGC":59090, "GCAGG":70093, "GCTAA":17099, "GCTAT":25106, "GCTAC":26298, "GCTAG":14934, "GCTTA":20613, "GCTTT":54942, "GCTTC":70034, "GCTTG":53258, "GCTCA":38457, "GCTCT":38924, "GCTCC":54298, "GCTCG":43431, "GCTGA":47418, "GCTGT":40199, "GCTGC":63606, "GCTGG":81916, "GCCAA":59108, "GCCAT":45482, "GCCAC":51186, "GCCAG":57948, "GCCTA":22375, "GCCTT":52394, "GCCTC":55811, "GCCTG":61196, "GCCCA":56402, "GCCCT":45617, "GCCCC":50192, "GCCCG":48195, "GCCGA":62622, "GCCGT":46349, "GCCGC":74358, "GCCGG":66077, "GCGAA":40973, "GCGAT":42036, "GCGAC":39388, "GCGAG":35995, "GCGTA":16185, "GCGTT":32467, "GCGTC":31943, "GCGTG":29056, "GCGCA":35078, "GCGCT":37874, "GCGCC":54480, "GCGCG":40804, "GCGGA":45120, "GCGGT":51367, "GCGGC":70724, "GCGGG":53594, "GGAAA":60898, "GGAAT":45071, "GGAAC":47157, "GGAAG":57963, "GGATA":35100, "GGATT":51913, "GGATC":40868, "GGATG":54008, "GGACA":32671, "GGACT":28092, "GGACC":30503, "GGACG":34608, "GGAGA":71517, "GGAGT":31059, "GGAGC":45179, "GGAGG":78127, "GGTAA":24203, "GGTAT":27231, "GGTAC":20602, "GGTAG":28911, "GGTTA":22802, "GGTTT":71084, "GGTTC":49908, "GGTTG":74614, "GGTCA":37976, "GGTCT":46455, "GGTCC":30929, "GGTCG":45775, "GGTGA":52986, "GGTGT":42847, "GGTGC":47150, "GGTGG":90766, "GGCAA":51368, "GGCAT":43533, "GGCAC":33777, "GGCAG":53637, "GGCTA":27148, "GGCTT":62176, "GGCTC":44312, "GGCTG":70189, "GGCCA":51045, "GGCCT":46208, "GGCCC":40315, "GGCCG":57824, "GGCGA":65120, "GGCGT":40689, "GGCGC":52611, "GGCGG":85819, "GGGAA":44035, "GGGAT":44430, "GGGAC":28211, "GGGAG":48771, "GGGTA":22445, "GGGTT":63727, "GGGTC":38060, "GGGTG":53645, "GGGCA":45087, "GGGCT":48636, "GGGCC":38529, "GGGCG":51591, "GGGGA":46895, "GGGGT":51610, "GGGGC":44296, "GGGGG":39599 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24C_S12_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24C_S12_R2_001.fastq.gz -o AM-AL-24C.trim.R1.fastq.gz -O AM-AL-24C.trim.R2.fastq.gz -m --merged_out AM-AL-24C.trim.merged.fastq.gz " }