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"CGGAC":28305, "CGGAG":57065, "CGGTA":30641, "CGGTT":44669, "CGGTC":44017, "CGGTG":56809, "CGGCA":62465, "CGGCT":57867, "CGGCC":63289, "CGGCG":85040, "CGGGA":45583, "CGGGT":40123, "CGGGC":48642, "CGGGG":47961, "GAAAA":86362, "GAAAT":56142, "GAAAC":51725, "GAAAG":64544, "GAATA":36029, "GAATT":42935, "GAATC":41463, "GAATG":36873, "GAACA":49997, "GAACT":209895, "GAACC":51392, "GAACG":36034, "GAAGA":552831, "GAAGT":40059, "GAAGC":64171, "GAAGG":63868, "GATAA":39455, "GATAT":34140, "GATAC":24611, "GATAG":43168, "GATTA":29701, "GATTT":61271, "GATTC":44394, "GATTG":43980, "GATCA":49541, "GATCT":48095, "GATCC":45168, "GATCG":564468, "GATGA":70038, "GATGT":39451, "GATGC":45460, "GATGG":62114, "GACAA":47194, "GACAT":33615, "GACAC":26151, "GACAG":40361, "GACTA":19903, "GACTT":38807, "GACTC":25297, "GACTG":28971, "GACCA":55416, "GACCT":39396, "GACCC":44597, "GACCG":45520, "GACGA":56185, "GACGT":26388, "GACGC":36765, "GACGG":42611, "GAGAA":69924, "GAGAT":163822, "GAGAC":40320, "GAGAG":47815, "GAGTA":20879, "GAGTT":38016, "GAGTC":22982, "GAGTG":22402, "GAGCA":428641, "GAGCT":34590, "GAGCC":44274, "GAGCG":36930, "GAGGA":82849, "GAGGT":44525, "GAGGC":51030, "GAGGG":44934, "GTAAA":25080, "GTAAT":21396, "GTAAC":18644, "GTAAG":21242, "GTATA":14510, "GTATT":27168, "GTATC":40647, "GTATG":21563, "GTACA":18606, "GTACT":16729, "GTACC":20919, "GTACG":16628, "GTAGA":71786, "GTAGT":21023, "GTAGC":24480, "GTAGG":24368, "GTTAA":19212, "GTTAT":25438, "GTTAC":21278, "GTTAG":27017, "GTTTA":28178, "GTTTT":68871, "GTTTC":54430, "GTTTG":58713, "GTTCA":42934, "GTTCT":48068, "GTTCC":54541, "GTTCG":39637, "GTTGA":52355, "GTTGT":51214, "GTTGC":46774, "GTTGG":71580, "GTCAA":39475, "GTCAT":33296, "GTCAC":98473, "GTCAG":37981, "GTCTA":21944, "GTCTT":45261, "GTCTC":40671, "GTCTG":260593, "GTCCA":40696, "GTCCT":40137, "GTCCC":32963, "GTCCG":29357, "GTCGA":46515, "GTCGT":37252, "GTCGC":41289, "GTCGG":50730, "GTGAA":43946, "GTGAT":40186, "GTGAC":24792, "GTGAG":34621, "GTGTA":16660, "GTGTT":38368, 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"GCGCA":40685, "GCGCT":40161, "GCGCC":59564, "GCGCG":44363, "GCGGA":51527, "GCGGT":52563, "GCGGC":74204, "GCGGG":56036, "GGAAA":68500, "GGAAT":44828, "GGAAC":53278, "GGAAG":520678, "GGATA":40544, "GGATT":50472, "GGATC":41620, "GGATG":55840, "GGACA":37677, "GGACT":29147, "GGACC":32949, "GGACG":37000, "GGAGA":118089, "GGAGT":32463, "GGAGC":47575, "GGAGG":80604, "GGTAA":26736, "GGTAT":47118, "GGTAC":20704, "GGTAG":46563, "GGTTA":28968, "GGTTT":72128, "GGTTC":50400, "GGTTG":77088, "GGTCA":42885, "GGTCT":45536, "GGTCC":32507, "GGTCG":48484, "GGTGA":59447, "GGTGT":43745, "GGTGC":48417, "GGTGG":93163, "GGCAA":59084, "GGCAT":43760, "GGCAC":36485, "GGCAG":72080, "GGCTA":32729, "GGCTT":62925, "GGCTC":44957, "GGCTG":71133, "GGCCA":59320, "GGCCT":47661, "GGCCC":42591, "GGCCG":62160, "GGCGA":73817, "GGCGT":43493, "GGCGC":56855, "GGCGG":89675, "GGGAA":49136, "GGGAT":45364, "GGGAC":30162, "GGGAG":62796, "GGGTA":27699, "GGGTT":65593, "GGGTC":38188, "GGGTG":57104, "GGGCA":50515, "GGGCT":48452, "GGGCC":40438, "GGGCG":55064, "GGGGA":52678, "GGGGT":55975, "GGGGC":45427, "GGGGG":186374 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 963507, "total_bases": 58773927, "q20_bases": 56717712, "q30_bases": 53666803, "total_cycles": 61, "quality_curves": { "A":[39.4462,39.1311,39.1953,38.9233,39.1031,39.224,39.1198,39.1223,39.1513,39.1911,39.1863,39.164,39.1707,39.1778,39.1019,39.0903,39.1925,39.1189,39.1943,39.0811,38.2805,39.0996,39.1591,39.1803,38.465,39.0737,39.1287,38.2228,38.9767,37.7307,39.061,39.1361,39.0221,39.0604,38.9121,38.9613,38.9724,38.9896,38.8437,38.7014,37.7576,37.448,38.3654,38.1353,38.0614,38.316,38.2695,36.9858,37.8215,36.9381,36.7598,36.4054,37.291,37.0331,36.683,35.3102,35.1139,34.677,34.2937,34.6307,33.7459], 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"GC":[0.573997,0.536765,0.581751,0.577547,0.572239,0.517595,0.526505,0.506992,0.497395,0.511623,0.518009,0.5133,0.521016,0.522243,0.520632,0.527149,0.528747,0.520898,0.524953,0.52844,0.520818,0.528172,0.528148,0.519841,0.525404,0.527923,0.518711,0.526645,0.528914,0.520696,0.527719,0.526926,0.518008,0.525886,0.526841,0.520635,0.522965,0.526459,0.518442,0.524764,0.525119,0.518206,0.523834,0.525995,0.520404,0.525396,0.52431,0.518376,0.522816,0.525547,0.518699,0.521522,0.525304,0.518995,0.523295,0.524179,0.522768,0.523826,0.525118,0.519527,0.525862,0.527757,0.520932,0.528096,0.528786,0.522823,0.529541,0.528857,0.523946,0.530843,0.53296,0.526072,0.533445,0.52756,0.529918,0.533237,0.530773,0.527335,0.53825,0.535916,0.532279,0.547465,0.546186,0.555814,0.561503,0.566781,0.56356,0.574705,0.570853,0.537245,0.501582] }, "kmer_count": { "AAAAA":86276, "AAAAT":55979, "AAAAC":62017, "AAAAG":59062, "AAATA":36050, "AAATT":42504, "AAATC":50384, "AAATG":37825, "AAACA":49099, "AAACT":35786, 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"CTTGA":45598, "CTTGT":41011, "CTTGC":41747, "CTTGG":52752, "CTCAA":42735, "CTCAT":33567, "CTCAC":30335, "CTCAG":31037, "CTCTA":21389, "CTCTT":50511, "CTCTC":40839, "CTCTG":37919, "CTCCA":60357, "CTCCT":85142, "CTCCC":55780, "CTCCG":44794, "CTCGA":40469, "CTCGT":32771, "CTCGC":37471, "CTCGG":41137, "CTGAA":41061, "CTGAT":36819, "CTGAC":29191, "CTGAG":29580, "CTGTA":16281, "CTGTT":47044, "CTGTC":28228, "CTGTG":28346, "CTGCA":41359, "CTGCT":72919, "CTGCC":57494, "CTGCG":37649, "CTGGA":53462, "CTGGT":54494, "CTGGC":54617, "CTGGG":50743, "CCAAA":71734, "CCAAT":40269, "CCAAC":72845, "CCAAG":50972, "CCATA":29631, "CCATT":40711, "CCATC":57532, "CCATG":39103, "CCACA":53423, "CCACT":29986, "CCACC":99251, "CCACG":38827, "CCAGA":51874, "CCAGT":38293, "CCAGC":76537, "CCAGG":51508, "CCTAA":20020, "CCTAT":22424, "CCTAC":25255, "CCTAG":14238, "CCTTA":18478, "CCTTT":55621, "CCTTC":68091, "CCTTG":52122, "CCTCA":48312, "CCTCT":45362, "CCTCC":88318, "CCTCG":49566, "CCTGA":42360, "CCTGT":41337, "CCTGC":75972, "CCTGG":54610, "CCCAA":70048, "CCCAT":41588, "CCCAC":61381, "CCCAG":55054, "CCCTA":22278, "CCCTT":42191, "CCCTC":50498, "CCCTG":45524, "CCCCA":67156, "CCCCT":44212, "CCCCC":47864, "CCCCG":46474, "CCCGA":40666, "CCCGT":28891, "CCCGC":56260, "CCCGG":46255, "CCGAA":43926, "CCGAT":40852, "CCGAC":41489, "CCGAG":41053, "CCGTA":20647, "CCGTT":33083, "CCGTC":40716, "CCGTG":30138, "CCGCA":43704, "CCGCT":43580, "CCGCC":87908, "CCGCG":45307, "CCGGA":41678, "CCGGT":42293, "CCGGC":62550, "CCGGG":43416, "CGAAA":42340, "CGAAT":29435, "CGAAC":33478, "CGAAG":45779, "CGATA":25932, "CGATT":35862, "CGATC":43110, "CGATG":48459, "CGACA":33046, "CGACT":27696, "CGACC":46746, "CGACG":45905, "CGAGA":38315, "CGAGT":21942, "CGAGC":36381, "CGAGG":42509, "CGTAA":17258, "CGTAT":15844, "CGTAC":13893, "CGTAG":19217, "CGTTA":13627, "CGTTT":33679, "CGTTC":33472, "CGTTG":35013, "CGTCA":29846, "CGTCT":30899, "CGTCC":34698, "CGTCG":43433, "CGTGA":26769, "CGTGT":17452, "CGTGC":24777, "CGTGG":34984, "CGCAA":32411, "CGCAT":25072, "CGCAC":27595, "CGCAG":35778, "CGCTA":15941, "CGCTT":37275, "CGCTC":35972, "CGCTG":44039, "CGCCA":58128, "CGCCT":54496, "CGCCC":54511, "CGCCG":74833, "CGCGA":32078, "CGCGT":21885, "CGCGC":39246, "CGCGG":42934, "CGGAA":39544, "CGGAT":34294, "CGGAC":23430, "CGGAG":38066, "CGGTA":22263, "CGGTT":39110, "CGGTC":37548, "CGGTG":47896, "CGGCA":48049, "CGGCT":50041, "CGGCC":53809, "CGGCG":70775, "CGGGA":36451, "CGGGT":34445, "CGGGC":40817, "CGGGG":40064, "GAAAA":73702, "GAAAT":49311, "GAAAC":45341, "GAAAG":47915, "GAATA":29712, "GAATT":38420, "GAATC":36751, "GAATG":32246, "GAACA":40226, "GAACT":34572, "GAACC":43909, "GAACG":30546, "GAAGA":69867, "GAAGT":34397, "GAAGC":55319, "GAAGG":54595, "GATAA":33062, "GATAT":30274, "GATAC":21437, "GATAG":25600, "GATTA":24485, "GATTT":55106, "GATTC":39437, "GATTG":38240, "GATCA":40455, "GATCT":42577, "GATCC":39288, "GATCG":39643, "GATGA":59340, "GATGT":34432, "GATGC":39093, "GATGG":53946, "GACAA":39368, "GACAT":28789, "GACAC":21818, "GACAG":25824, "GACTA":15396, "GACTT":34353, "GACTC":21526, "GACTG":24464, "GACCA":44734, "GACCT":33768, "GACCC":38399, "GACCG":38793, "GACGA":46135, "GACGT":22306, "GACGC":30904, "GACGG":36821, "GAGAA":58551, "GAGAT":44077, "GAGAC":34975, "GAGAG":33981, "GAGTA":15827, "GAGTT":33172, "GAGTC":19951, "GAGTG":19177, "GAGCA":41814, "GAGCT":29248, "GAGCC":37686, "GAGCG":30660, "GAGGA":68411, "GAGGT":37684, "GAGGC":43385, "GAGGG":37965, "GTAAA":21426, "GTAAT":18667, "GTAAC":15777, "GTAAG":13912, "GTATA":11873, "GTATT":24157, "GTATC":20508, "GTATG":18347, "GTACA":15167, "GTACT":14748, "GTACC":18119, "GTACG":14006, "GTAGA":22119, "GTAGT":18380, "GTAGC":21097, "GTAGG":20922, "GTTAA":16304, "GTTAT":22928, "GTTAC":18658, "GTTAG":13254, "GTTTA":22235, "GTTTT":61816, "GTTTC":48390, "GTTTG":52412, "GTTCA":35804, "GTTCT":42578, "GTTCC":47930, "GTTCG":34084, "GTTGA":44119, "GTTGT":45370, "GTTGC":40920, "GTTGG":63481, "GTCAA":32170, "GTCAT":28902, "GTCAC":22294, "GTCAG":25733, "GTCTA":16204, "GTCTT":39708, "GTCTC":36946, "GTCTG":30595, "GTCCA":33048, "GTCCT":35384, "GTCCC":28905, "GTCCG":24967, "GTCGA":37142, "GTCGT":31579, "GTCGC":35013, "GTCGG":36387, "GTGAA":35176, "GTGAT":34355, "GTGAC":20893, "GTGAG":24805, "GTGTA":12365, "GTGTT":33615, "GTGTC":19532, "GTGTG":25576, "GTGCA":22604, "GTGCT":32452, "GTGCC":31298, "GTGCG":24573, "GTGGA":40113, "GTGGT":56879, "GTGGC":42502, "GTGGG":46863, "GCAAA":42730, "GCAAT":32724, "GCAAC":39325, "GCAAG":35997, "GCATA":20804, "GCATT":31432, "GCATC":36709, "GCATG":28045, "GCACA":26200, "GCACT":19106, "GCACC":46691, "GCACG":25201, "GCAGA":41360, "GCAGT":26729, "GCAGC":52650, "GCAGG":60225, "GCTAA":16141, "GCTAT":22830, "GCTAC":23318, "GCTAG":13532, "GCTTA":19119, "GCTTT":50122, "GCTTC":61494, "GCTTG":46617, "GCTCA":34921, "GCTCT":34772, "GCTCC":48510, "GCTCG":38176, "GCTGA":42339, "GCTGT":35695, "GCTGC":55676, "GCTGG":71055, "GCCAA":54931, "GCCAT":42487, "GCCAC":47356, "GCCAG":51800, "GCCTA":20812, "GCCTT":48269, "GCCTC":49993, "GCCTG":54303, "GCCCA":52181, "GCCCT":41794, "GCCCC":45806, "GCCCG":43917, "GCCGA":56970, "GCCGT":42399, "GCCGC":67781, "GCCGG":59132, "GCGAA":36737, "GCGAT":37834, "GCGAC":35839, "GCGAG":32116, "GCGTA":14650, "GCGTT":29511, "GCGTC":28464, "GCGTG":26236, "GCGCA":30949, "GCGCT":33700, "GCGCC":50275, "GCGCG":36399, "GCGGA":40138, "GCGGT":44809, "GCGGC":62371, "GCGGG":46926, "GGAAA":55910, "GGAAT":39618, "GGAAC":41239, "GGAAG":51556, "GGATA":31463, "GGATT":45124, "GGATC":36000, "GGATG":48342, "GGACA":29599, "GGACT":25032, "GGACC":28151, "GGACG":30632, "GGAGA":64058, "GGAGT":28046, "GGAGC":40642, "GGAGG":67884, "GGTAA":21302, "GGTAT":24462, "GGTAC":17765, "GGTAG":25169, "GGTTA":21518, "GGTTT":64685, "GGTTC":44230, "GGTTG":67922, "GGTCA":34106, "GGTCT":39868, "GGTCC":28123, "GGTCG":40699, "GGTGA":47742, "GGTGT":38291, "GGTGC":41360, "GGTGG":79390, "GGCAA":46919, "GGCAT":37630, "GGCAC":30614, "GGCAG":47072, "GGCTA":24465, "GGCTT":55090, "GGCTC":39087, "GGCTG":60753, "GGCCA":45349, "GGCCT":41015, "GGCCC":36038, "GGCCG":51547, "GGCGA":58519, "GGCGT":36815, "GGCGC":47201, "GGCGG":75267, "GGGAA":39384, "GGGAT":39323, "GGGAC":25406, "GGGAG":43452, "GGGTA":20294, "GGGTT":57956, "GGGTC":33022, "GGGTG":47629, "GGGCA":39479, "GGGCT":41988, "GGGCC":33975, "GGGCG":45813, "GGGGA":41733, "GGGGT":46730, "GGGGC":38735, "GGGGG":35771 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24B_S11_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24B_S11_R2_001.fastq.gz -o AM-AL-24B.trim.R1.fastq.gz -O AM-AL-24B.trim.R2.fastq.gz -m --merged_out AM-AL-24B.trim.merged.fastq.gz " }