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"CGGAG":43766, "CGGTA":24368, "CGGTT":34444, "CGGTC":34625, "CGGTG":45786, "CGGCA":47963, "CGGCT":47493, "CGGCC":51455, "CGGCG":63684, "CGGGA":34846, "CGGGT":32110, "CGGGC":38994, "CGGGG":39701, "GAAAA":62148, "GAAAT":41220, "GAAAC":38475, "GAAAG":48188, "GAATA":25402, "GAATT":32689, "GAATC":31227, "GAATG":26623, "GAACA":37793, "GAACT":150275, "GAACC":41764, "GAACG":26873, "GAAGA":407101, "GAAGT":30052, "GAAGC":50237, "GAAGG":48361, "GATAA":29704, "GATAT":24951, "GATAC":18220, "GATAG":32651, "GATTA":21519, "GATTT":46268, "GATTC":33849, "GATTG":32667, "GATCA":37871, "GATCT":36506, "GATCC":35102, "GATCG":419751, "GATGA":53158, "GATGT":29416, "GATGC":34829, "GATGG":46768, "GACAA":34211, "GACAT":36288, "GACAC":19577, "GACAG":30629, "GACTA":14828, "GACTT":30328, "GACTC":19520, "GACTG":22207, "GACCA":40676, "GACCT":30283, "GACCC":35124, "GACCG":35411, "GACGA":40752, "GACGT":20434, "GACGC":27921, "GACGG":31673, "GAGAA":51573, "GAGAT":116363, "GAGAC":30674, "GAGAG":34747, "GAGTA":14992, "GAGTT":27812, "GAGTC":17513, "GAGTG":17143, "GAGCA":316831, "GAGCT":26661, "GAGCC":35472, "GAGCG":27640, "GAGGA":64872, "GAGGT":35096, "GAGGC":40712, "GAGGG":35757, "GTAAA":19003, "GTAAT":15881, "GTAAC":14486, "GTAAG":15498, "GTATA":10208, "GTATT":20237, "GTATC":17412, "GTATG":15417, "GTACA":14228, "GTACT":13209, "GTACC":16865, "GTACG":13362, "GTAGA":56443, "GTAGT":15802, "GTAGC":20227, "GTAGG":19101, "GTTAA":13397, "GTTAT":18932, "GTTAC":16992, "GTTAG":20594, "GTTTA":20537, "GTTTT":50613, "GTTTC":40479, "GTTTG":44485, "GTTCA":32447, "GTTCT":37024, "GTTCC":44770, "GTTCG":30998, "GTTGA":39227, "GTTGT":39557, "GTTGC":36346, "GTTGG":57565, "GTCAA":28369, "GTCAT":24890, "GTCAC":66964, "GTCAG":29521, "GTCTA":16607, "GTCTT":34465, "GTCTC":32608, "GTCTG":195724, "GTCCA":32455, "GTCCT":31714, "GTCCC":26693, "GTCCG":22916, "GTCGA":34002, "GTCGT":28433, "GTCGC":31200, "GTCGG":33475, "GTGAA":34797, "GTGAT":31159, "GTGAC":18817, "GTGAG":27405, "GTGTA":12099, "GTGTT":30183, "GTGTC":17354, "GTGTG":24045, "GTGCA":21975, "GTGCT":30776, "GTGCC":29786, "GTGCG":23341, "GTGGA":39379, "GTGGT":51006, "GTGGC":40158, "GTGGG":45629, "GCAAA":38255, "GCAAT":27344, "GCAAC":35485, "GCAAG":40366, "GCATA":20189, "GCATT":27479, "GCATC":33349, "GCATG":25637, "GCACA":274388, "GCACT":17600, "GCACC":46037, "GCACG":23783, "GCAGA":72320, "GCAGT":23575, "GCAGC":50228, "GCAGG":59629, "GCTAA":15186, "GCTAT":20407, "GCTAC":22195, "GCTAG":22208, "GCTTA":19715, "GCTTT":42546, "GCTTC":57641, "GCTTG":42213, "GCTCA":33299, "GCTCT":31298, "GCTCC":46134, "GCTCG":36128, "GCTGA":41271, "GCTGT":33467, "GCTGC":53183, "GCTGG":68961, "GCCAA":54054, "GCCAT":38083, "GCCAC":43918, "GCCAG":63911, "GCCTA":22057, "GCCTT":42623, "GCCTC":47587, "GCCTG":53909, "GCCCA":53589, "GCCCT":39682, "GCCCC":45544, "GCCCG":43638, "GCCGA":54575, "GCCGT":38456, "GCCGC":66028, "GCCGG":56776, "GCGAA":36775, "GCGAT":33959, "GCGAC":30688, "GCGAG":34621, "GCGTA":15808, "GCGTT":26120, "GCGTC":26033, "GCGTG":25083, "GCGCA":32590, "GCGCT":32408, "GCGCC":48110, "GCGCG":34935, "GCGGA":40376, "GCGGT":42049, "GCGGC":58850, "GCGGG":45636, "GGAAA":50369, "GGAAT":33698, "GGAAC":37745, "GGAAG":386771, "GGATA":30587, "GGATT":38832, "GGATC":31970, "GGATG":43133, "GGACA":28770, "GGACT":22471, "GGACC":25762, "GGACG":28789, "GGAGA":87982, "GGAGT":24626, "GGAGC":37294, "GGAGG":66468, "GGTAA":20412, "GGTAT":20511, "GGTAC":16778, "GGTAG":37543, "GGTTA":21320, "GGTTT":55002, "GGTTC":40161, "GGTTG":61335, "GGTCA":32927, "GGTCT":36769, "GGTCC":25872, "GGTCG":36539, "GGTGA":47900, "GGTGT":35772, "GGTGC":40267, "GGTGG":75377, "GGCAA":43633, "GGCAT":34810, "GGCAC":28564, "GGCAG":57152, "GGCTA":25820, "GGCTT":51231, "GGCTC":36130, "GGCTG":59254, "GGCCA":46980, "GGCCT":39088, "GGCCC":35320, "GGCCG":49772, "GGCGA":54091, "GGCGT":33576, "GGCGC":45144, "GGCGG":72290, "GGGAA":37549, "GGGAT":34990, "GGGAC":23512, "GGGAG":48523, "GGGTA":21974, "GGGTT":53110, "GGGTC":31219, "GGGTG":47479, "GGGCA":40632, "GGGCT":40837, "GGGCC":32855, "GGGCG":43888, "GGGGA":42223, "GGGGT":46101, "GGGGC":38189, "GGGGG":114516 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 734746, "total_bases": 44819506, "q20_bases": 43479104, "q30_bases": 41288343, "total_cycles": 61, "quality_curves": { "A":[39.3901,39.2638,39.2581,39.1057,39.1895,39.3082,39.2917,39.2217,39.2894,39.2452,39.2417,39.2409,39.2652,39.2419,39.1594,39.1399,39.2431,39.1812,39.2753,39.153,38.444,39.1652,39.2104,39.2236,38.6607,39.1494,39.1844,38.5022,39.0487,38.0639,39.1151,39.2041,39.096,39.1444,38.9927,39.0115,39.0455,38.5915,38.9507,39.031,38.7983,38.5696,38.5449,38.3136,38.2757,38.5253,38.457,37.4428,38.0028,37.1503,36.9831,36.6725,37.4846,37.2195,36.8733,35.6825,35.4409,34.989,34.6815,34.9991,34.414], 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"GC":[0.582751,0.534263,0.585322,0.582715,0.576409,0.519951,0.533634,0.514709,0.506985,0.518214,0.522906,0.520787,0.528189,0.533843,0.528733,0.536575,0.537137,0.527247,0.53317,0.533447,0.528738,0.535759,0.536346,0.528756,0.533674,0.533773,0.526846,0.532557,0.533022,0.529597,0.534614,0.534817,0.526845,0.532519,0.53345,0.527745,0.529483,0.530757,0.524026,0.531509,0.532116,0.525591,0.53298,0.529821,0.525022,0.530553,0.530914,0.523791,0.527254,0.529682,0.524412,0.531916,0.529714,0.523834,0.530975,0.529921,0.528915,0.528116,0.531794,0.52713,0.5324,0.532069,0.52742,0.534758,0.537082,0.529195,0.534112,0.534116,0.529594,0.535117,0.539724,0.533566,0.536994,0.542421,0.529372,0.54042,0.542122,0.542787,0.543598,0.544918,0.548449,0.557426,0.556062,0.549746,0.565259,0.561819,0.570428,0.593772,0.578776,0.554912,0.525411] }, "kmer_count": { "AAAAA":59500, "AAAAT":38974, "AAAAC":44154, "AAAAG":40189, "AAATA":25303, "AAATT":30166, "AAATC":36095, "AAATG":27306, "AAACA":34793, "AAACT":25287, 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"CTTGG":39267, "CTCAA":31429, "CTCAT":25467, "CTCAC":23825, "CTCAG":23495, "CTCTA":16034, "CTCTT":37112, "CTCTC":31461, "CTCTG":29389, "CTCCA":47660, "CTCCT":69124, "CTCCC":44969, "CTCCG":36178, "CTCGA":30360, "CTCGT":25016, "CTCGC":29489, "CTCGG":31366, "CTGAA":30268, "CTGAT":27334, "CTGAC":22055, "CTGAG":21950, "CTGTA":11559, "CTGTT":37036, "CTGTC":21325, "CTGTG":21936, "CTGCA":31942, "CTGCT":60447, "CTGCC":46652, "CTGCG":30115, "CTGGA":40339, "CTGGT":42602, "CTGGC":43004, "CTGGG":40815, "CCAAA":54480, "CCAAT":30184, "CCAAC":57793, "CCAAG":39102, "CCATA":21575, "CCATT":29916, "CCATC":43707, "CCATG":29174, "CCACA":41540, "CCACT":22430, "CCACC":78494, "CCACG":29810, "CCAGA":38525, "CCAGT":29575, "CCAGC":61073, "CCAGG":41282, "CCTAA":14263, "CCTAT":16926, "CCTAC":19821, "CCTAG":10846, "CCTTA":13803, "CCTTT":41934, "CCTTC":52691, "CCTTG":39749, "CCTCA":38177, "CCTCT":35838, "CCTCC":74082, "CCTCG":38445, "CCTGA":31626, "CCTGT":32768, "CCTGC":65304, "CCTGG":43743, "CCCAA":55491, "CCCAT":31344, "CCCAC":49847, "CCCAG":44157, "CCCTA":17179, "CCCTT":32862, "CCCTC":41985, "CCCTG":36686, "CCCCA":55714, "CCCCT":36918, "CCCCC":40329, "CCCCG":38535, "CCCGA":31377, "CCCGT":23285, "CCCGC":46476, "CCCGG":36794, "CCGAA":32294, "CCGAT":30077, "CCGAC":30828, "CCGAG":30677, "CCGTA":15682, "CCGTT":24863, "CCGTC":30753, "CCGTG":23047, "CCGCA":33928, "CCGCT":34399, "CCGCC":72530, "CCGCG":35525, "CCGGA":31636, "CCGGT":33257, "CCGGC":49000, "CCGGG":34187, "CGAAA":30480, "CGAAT":21324, "CGAAC":25218, "CGAAG":33446, "CGATA":18881, "CGATT":26045, "CGATC":31672, "CGATG":35576, "CGACA":23749, "CGACT":21677, "CGACC":33053, "CGACG":32273, "CGAGA":27368, "CGAGT":15899, "CGAGC":27589, "CGAGG":31504, "CGTAA":13299, "CGTAT":11399, "CGTAC":10760, "CGTAG":14894, "CGTTA":9841, "CGTTT":24494, "CGTTC":25445, "CGTTG":25358, "CGTCA":21880, "CGTCT":23473, "CGTCC":27385, "CGTCG":31030, "CGTGA":19613, "CGTGT":12835, "CGTGC":18624, "CGTGG":26483, "CGCAA":24223, "CGCAT":18226, "CGCAC":21501, "CGCAG":27125, "CGCTA":11539, "CGCTT":27875, "CGCTC":28022, "CGCTG":33745, "CGCCA":44489, "CGCCT":43940, "CGCCC":44657, "CGCCG":56493, "CGCGA":23457, "CGCGT":16630, "CGCGC":30153, "CGCGG":33760, "CGGAA":29985, "CGGAT":25211, "CGGAC":17406, "CGGAG":28946, "CGGTA":17324, "CGGTT":29288, "CGGTC":28596, "CGGTG":37295, "CGGCA":35313, "CGGCT":40008, "CGGCC":41920, "CGGCG":50445, "CGGGA":27073, "CGGGT":26627, "CGGGC":31558, "CGGGG":31953, "GAAAA":51341, "GAAAT":34987, "GAAAC":32511, "GAAAG":34085, "GAATA":20376, "GAATT":28749, "GAATC":26759, "GAATG":22657, "GAACA":29308, "GAACT":25730, "GAACC":35083, "GAACG":22055, "GAAGA":48612, "GAAGT":24670, "GAAGC":41262, "GAAGG":39634, "GATAA":24011, "GATAT":21369, "GATAC":15348, "GATAG":18682, "GATTA":17162, "GATTT":40649, "GATTC":29364, "GATTG":27590, "GATCA":29264, "GATCT":31457, "GATCC":29144, "GATCG":28549, "GATGA":43562, "GATGT":24739, "GATGC":28631, "GATGG":39281, "GACAA":27508, "GACAT":20682, "GACAC":15874, "GACAG":18871, "GACTA":11028, "GACTT":26196, "GACTC":15994, "GACTG":17816, "GACCA":31684, "GACCT":24947, "GACCC":29213, "GACCG":29114, "GACGA":32495, "GACGT":16432, "GACGC":22483, "GACGG":26420, "GAGAA":42056, "GAGAT":31627, "GAGAC":25383, "GAGAG":24259, "GAGTA":10964, "GAGTT":23639, "GAGTC":14673, "GAGTG":13936, "GAGCA":31189, "GAGCT":21552, "GAGCC":29077, "GAGCG":21812, "GAGGA":52004, "GAGGT":28375, "GAGGC":33406, "GAGGG":29284, "GTAAA":15664, "GTAAT":13396, "GTAAC":11666, "GTAAG":9607, "GTATA":7871, "GTATT":17442, "GTATC":14766, "GTATG":13130, "GTACA":10891, "GTACT":11058, "GTACC":13815, "GTACG":10769, "GTAGA":17551, "GTAGT":13296, "GTAGC":16843, "GTAGG":15633, "GTTAA":10827, "GTTAT":16590, "GTTAC":14382, "GTTAG":10127, "GTTTA":15858, "GTTTT":44528, "GTTTC":34916, "GTTTG":38878, "GTTCA":26015, "GTTCT":32269, "GTTCC":38362, "GTTCG":25703, "GTTGA":32516, "GTTGT":34045, "GTTGC":30552, "GTTGG":49644, "GTCAA":22108, "GTCAT":20921, "GTCAC":16681, "GTCAG":18816, "GTCTA":11917, "GTCTT":29440, "GTCTC":28643, "GTCTG":23806, "GTCCA":25637, "GTCCT":26976, "GTCCC":23128, "GTCCG":18848, "GTCGA":26045, "GTCGT":23190, "GTCGC":25460, "GTCGG":27000, "GTGAA":26974, "GTGAT":25078, "GTGAC":15185, "GTGAG":19108, "GTGTA":8502, "GTGTT":25901, "GTGTC":14385, "GTGTG":19853, "GTGCA":16872, "GTGCT":25384, "GTGCC":24398, "GTGCG":18654, "GTGGA":30842, "GTGGT":42885, "GTGGC":33436, "GTGGG":37215, "GCAAA":29755, "GCAAT":22870, "GCAAC":29135, "GCAAG":25911, "GCATA":14803, "GCATT":23319, "GCATC":27300, "GCATG":20991, "GCACA":19102, "GCACT":14164, "GCACC":37639, "GCACG":18837, "GCAGA":29591, "GCAGT":19687, "GCAGC":41531, "GCAGG":48110, "GCTAA":11587, "GCTAT":16904, "GCTAC":18057, "GCTAG":10304, "GCTTA":14033, "GCTTT":36359, "GCTTC":49547, "GCTTG":35735, "GCTCA":26231, "GCTCT":26673, "GCTCC":39533, "GCTCG":29514, "GCTGA":32141, "GCTGT":27426, "GCTGC":44059, "GCTGG":57408, "GCCAA":41212, "GCCAT":31616, "GCCAC":36563, "GCCAG":39759, "GCCTA":15674, "GCCTT":36244, "GCCTC":41154, "GCCTG":44400, "GCCCA":41336, "GCCCT":33332, "GCCCC":37765, "GCCCG":35014, "GCCGA":41644, "GCCGT":31262, "GCCGC":53532, "GCCGG":45470, "GCGAA":27232, "GCGAT":27775, "GCGAC":24373, "GCGAG":23297, "GCGTA":10892, "GCGTT":21365, "GCGTC":21109, "GCGTG":19686, "GCGCA":23573, "GCGCT":25696, "GCGCC":38732, "GCGCG":27222, "GCGGA":30268, "GCGGT":34839, "GCGGC":47479, "GCGGG":36931, "GGAAA":39538, "GGAAT":29081, "GGAAC":31742, "GGAAG":37621, "GGATA":22692, "GGATT":33764, "GGATC":26549, "GGATG":35465, "GGACA":21873, "GGACT":18634, "GGACC":21357, "GGACG":23105, "GGAGA":46501, "GGAGT":20450, "GGAGC":30462, "GGAGG":54251, "GGTAA":15713, "GGTAT":17493, "GGTAC":13642, "GGTAG":20174, "GGTTA":15189, "GGTTT":48043, "GGTTC":34477, "GGTTG":53059, "GGTCA":25084, "GGTCT":31412, "GGTCC":21498, "GGTCG":29409, "GGTGA":36682, "GGTGT":30164, "GGTGC":33071, "GGTGG":62643, "GGCAA":32841, "GGCAT":28706, "GGCAC":23181, "GGCAG":36024, "GGCTA":18687, "GGCTT":43542, "GGCTC":30700, "GGCTG":49029, "GGCCA":34700, "GGCCT":32328, "GGCCC":29016, "GGCCG":39405, "GGCGA":41282, "GGCGT":27032, "GGCGC":35492, "GGCGG":58902, "GGGAA":28879, "GGGAT":28946, "GGGAC":19019, "GGGAG":32531, "GGGTA":15332, "GGGTT":45737, "GGGTC":26016, "GGGTG":38458, "GGGCA":30454, "GGGCT":34358, "GGGCC":26531, "GGGCG":35235, "GGGGA":32148, "GGGGT":37341, "GGGGC":31300, "GGGGG":28103 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24A_S10_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-24A_S10_R2_001.fastq.gz -o AM-AL-24A.trim.R1.fastq.gz -O AM-AL-24A.trim.R2.fastq.gz -m --merged_out AM-AL-24A.trim.merged.fastq.gz " }