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"GGGCC":38602, "GGGCG":51879, "GGGGA":43489, "GGGGT":40887, "GGGGC":44401, "GGGGG":138729 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 862880, "total_bases": 52635680, "q20_bases": 50644341, "q30_bases": 47894339, "total_cycles": 61, "quality_curves": { "A":[39.3239,39.1004,39.0275,38.9617,39.061,39.1231,39.0969,39.1052,39.1527,39.1597,39.1409,39.1407,39.1798,39.1654,39.0956,39.0828,39.1759,39.1056,39.1847,39.0752,38.3624,39.099,39.1363,39.1725,38.5069,39.0627,39.1062,38.2955,38.965,37.8644,39.0573,39.1624,39.0594,39.0617,38.1405,38.9891,38.97,38.9863,38.2748,38.7711,38.6333,38.3757,38.3336,38.0674,37.9663,38.2665,38.1567,36.8935,37.5747,36.6043,36.3682,35.9839,36.9329,36.644,36.2012,34.6558,34.3389,33.8673,33.4173,33.963,32.8235], 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"CTTGG":45888, "CTCAA":36239, "CTCAT":30585, "CTCAC":26943, "CTCAG":27719, "CTCTA":16817, "CTCTT":50512, "CTCTC":47853, "CTCTG":35828, "CTCCA":55421, "CTCCT":113234, "CTCCC":59552, "CTCCG":50459, "CTCGA":43508, "CTCGT":35284, "CTCGC":44699, "CTCGG":42456, "CTGAA":34452, "CTGAT":35396, "CTGAC":26932, "CTGAG":26269, "CTGTA":14010, "CTGTT":42293, "CTGTC":28471, "CTGTG":27476, "CTGCA":41749, "CTGCT":98825, "CTGCC":66965, "CTGCG":41570, "CTGGA":47644, "CTGGT":51454, "CTGGC":53007, "CTGGG":44849, "CCAAA":48224, "CCAAT":33413, "CCAAC":55992, "CCAAG":43050, "CCATA":22376, "CCATT":34954, "CCATC":53318, "CCATG":36591, "CCACA":44582, "CCACT":27599, "CCACC":93200, "CCACG":38108, "CCAGA":42632, "CCAGT":35753, "CCAGC":72127, "CCAGG":47372, "CCTAA":13505, "CCTAT":18432, "CCTAC":20856, "CCTAG":11800, "CCTTA":14712, "CCTTT":49644, "CCTTC":68328, "CCTTG":50300, "CCTCA":40189, "CCTCT":49366, "CCTCC":112078, "CCTCG":56394, "CCTGA":38370, "CCTGT":39397, "CCTGC":88996, "CCTGG":50921, "CCCAA":49005, "CCCAT":35156, "CCCAC":53490, "CCCAG":47606, "CCCTA":15893, "CCCTT":38684, "CCCTC":53091, "CCCTG":45360, "CCCCA":54601, "CCCCT":44978, "CCCCC":49390, "CCCCG":47157, "CCCGA":39123, "CCCGT":28904, "CCCGC":58695, "CCCGG":45048, "CCGAA":37573, "CCGAT":38279, "CCGAC":41690, "CCGAG":39228, "CCGTA":17041, "CCGTT":32492, "CCGTC":43922, "CCGTG":29803, "CCGCA":43281, "CCGCT":51288, "CCGCC":102064, "CCGCG":47268, "CCGGA":38499, "CCGGT":41686, "CCGGC":67156, "CCGGG":41531, "CGAAA":35212, "CGAAT":27276, "CGAAC":30782, "CGAAG":42058, "CGATA":23074, "CGATT":33482, "CGATC":45396, "CGATG":46708, "CGACA":32340, "CGACT":27794, "CGACC":47234, "CGACG":48567, "CGAGA":36025, "CGAGT":21784, "CGAGC":39435, "CGAGG":46144, "CGTAA":13266, "CGTAT":13919, "CGTAC":12732, "CGTAG":17114, "CGTTA":11152, "CGTTT":30156, "CGTTC":33548, "CGTTG":32880, "CGTCA":31103, "CGTCT":32067, "CGTCC":34554, "CGTCG":49181, "CGTGA":24701, "CGTGT":18899, "CGTGC":26485, "CGTGG":33639, "CGCAA":29766, "CGCAT":25656, "CGCAC":35160, "CGCAG":37119, "CGCTA":13360, "CGCTT":36535, "CGCTC":42765, "CGCTG":49387, "CGCCA":55821, "CGCCT":59625, "CGCCC":56122, "CGCCG":88680, "CGCGA":34374, "CGCGT":22396, "CGCGC":42345, "CGCGG":44297, "CGGAA":33976, "CGGAT":31684, "CGGAC":22480, "CGGAG":38759, "CGGTA":19939, "CGGTT":36710, "CGGTC":40081, "CGGTG":45989, "CGGCA":51207, "CGGCT":49321, "CGGCC":58548, "CGGCG":78552, "CGGGA":34835, "CGGGT":31716, "CGGGC":41204, "CGGGG":38428, "GAAAA":49645, "GAAAT":37443, "GAAAC":36548, "GAAAG":37866, "GAATA":22435, "GAATT":30510, "GAATC":32446, "GAATG":28703, "GAACA":31470, "GAACT":30355, "GAACC":37394, "GAACG":28016, "GAAGA":60633, "GAAGT":30455, "GAAGC":48923, "GAAGG":47075, "GATAA":23286, "GATAT":26666, "GATAC":19342, "GATAG":21475, "GATTA":18012, "GATTT":42785, "GATTC":36111, "GATTG":35893, "GATCA":38777, "GATCT":40137, "GATCC":36820, "GATCG":41261, "GATGA":52737, "GATGT":30933, "GATGC":37512, "GATGG":47612, "GACAA":32149, "GACAT":24505, "GACAC":20640, "GACAG":23418, "GACTA":12721, "GACTT":29433, "GACTC":21116, "GACTG":23043, "GACCA":40324, "GACCT":34018, "GACCC":32921, "GACCG":37572, "GACGA":46834, "GACGT":21179, "GACGC":30878, "GACGG":36475, "GAGAA":48562, "GAGAT":36919, "GAGAC":31521, "GAGAG":34025, "GAGTA":13263, "GAGTT":28613, "GAGTC":18647, "GAGTG":17474, "GAGCA":41995, "GAGCT":29401, "GAGCC":33964, "GAGCG":33480, "GAGGA":68325, "GAGGT":33970, "GAGGC":45380, "GAGGG":32873, "GTAAA":16271, "GTAAT":14715, "GTAAC":12370, "GTAAG":10599, "GTATA":8820, "GTATT":19219, "GTATC":18544, "GTATG":15483, "GTACA":12438, "GTACT":13094, "GTACC":16749, "GTACG":12513, "GTAGA":18631, "GTAGT":14835, "GTAGC":19155, "GTAGG":16439, "GTTAA":10287, "GTTAT":16994, "GTTAC":15155, "GTTAG":9850, "GTTTA":15688, "GTTTT":44796, "GTTTC":43010, "GTTTG":41581, "GTTCA":31766, "GTTCT":38784, "GTTCC":46630, "GTTCG":33346, "GTTGA":36966, "GTTGT":38437, "GTTGC":40076, "GTTGG":51197, "GTCAA":28507, "GTCAT":28400, "GTCAC":22990, "GTCAG":23984, "GTCTA":12670, "GTCTT":37394, "GTCTC":37154, "GTCTG":29049, "GTCCA":29209, "GTCCT":35313, "GTCCC":28749, "GTCCG":23692, "GTCGA":37314, "GTCGT":33968, "GTCGC":39896, "GTCGG":37381, "GTGAA":29201, "GTGAT":31402, "GTGAC":21401, "GTGAG":21790, "GTGTA":9898, "GTGTT":26851, "GTGTC":19072, "GTGTG":27618, "GTGCA":21138, "GTGCT":31880, "GTGCC":31421, "GTGCG":27216, "GTGGA":33493, "GTGGT":51638, "GTGGC":43189, "GTGGG":39374, "GCAAA":34399, "GCAAT":28757, "GCAAC":34888, "GCAAG":35325, "GCATA":16912, "GCATT":27188, "GCATC":36965, "GCATG":27438, "GCACA":30449, "GCACT":18210, "GCACC":44617, "GCACG":26345, "GCAGA":38937, "GCAGT":25230, "GCAGC":68580, "GCAGG":63115, "GCTAA":11721, "GCTAT":18821, "GCTAC":19189, "GCTAG":9843, "GCTTA":13188, "GCTTT":42573, "GCTTC":62248, "GCTTG":44412, "GCTCA":31219, "GCTCT":34123, "GCTCC":59140, "GCTCG":42917, "GCTGA":38841, "GCTGT":34475, "GCTGC":79977, "GCTGG":68250, "GCCAA":44879, "GCCAT":40307, "GCCAC":45987, "GCCAG":48630, "GCCTA":16340, "GCCTT":47066, "GCCTC":57155, "GCCTG":52522, "GCCCA":44004, "GCCCT":40186, "GCCCC":49414, "GCCCG":45106, "GCCGA":54127, "GCCGT":44181, "GCCGC":86348, "GCCGG":61699, "GCGAA":33524, "GCGAT":38640, "GCGAC":37589, "GCGAG":35373, "GCGTA":11843, "GCGTT":26774, "GCGTC":30463, "GCGTG":27648, "GCGCA":30933, "GCGCT":35637, "GCGCC":54076, "GCGCG":38791, "GCGGA":39688, "GCGGT":44278, "GCGGC":74126, "GCGGG":45787, "GGAAA":42036, "GGAAT":32927, "GGAAC":35623, "GGAAG":45009, "GGATA":23994, "GGATT":37125, "GGATC":34742, "GGATG":41125, "GGACA":24515, "GGACT":21120, "GGACC":26629, "GGACG":28474, "GGAGA":55201, "GGAGT":23423, "GGAGC":42810, "GGAGG":68845, "GGTAA":16564, "GGTAT":20093, "GGTAC":15979, "GGTAG":20495, "GGTTA":15463, "GGTTT":47680, "GGTTC":40370, "GGTTG":55762, "GGTCA":32080, "GGTCT":38145, "GGTCC":28792, "GGTCG":42138, "GGTGA":41964, "GGTGT":31412, "GGTGC":39972, "GGTGG":71583, "GGCAA":42192, "GGCAT":34725, "GGCAC":29565, "GGCAG":49673, "GGCTA":18382, "GGCTT":46722, "GGCTC":37456, "GGCTG":55970, "GGCCA":43891, "GGCCT":42350, "GGCCC":37368, "GGCCG":54113, "GGCGA":58375, "GGCGT":33694, "GGCGC":49792, "GGCGG":81178, "GGGAA":32957, "GGGAT":32814, "GGGAC":22680, "GGGAG":38277, "GGGTA":14644, "GGGTT":42638, "GGGTC":30126, "GGGTG":37836, "GGGCA":35739, "GGGCT":36849, "GGGCC":33750, "GGGCG":44489, "GGGGA":34384, "GGGGT":35526, "GGGGC":38424, "GGGGG":30480 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23C_S9_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23C_S9_R2_001.fastq.gz -o AM-AL-23C.trim.R1.fastq.gz -O AM-AL-23C.trim.R2.fastq.gz -m --merged_out AM-AL-23C.trim.merged.fastq.gz " }