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"CACGA":42936, "CACGT":376145, "CACGC":53622, "CACGG":38971, "CAGAA":56820, "CAGAT":229244, "CAGAC":36112, "CAGAG":48573, "CAGTA":24846, "CAGTT":41972, "CAGTC":131325, "CAGTG":55835, "CAGCA":110476, "CAGCT":48779, "CAGCC":84281, "CAGCG":58140, "CAGGA":94530, "CAGGT":46977, "CAGGC":67159, "CAGGG":49581, "CTAAA":18081, "CTAAT":14262, "CTAAC":13474, "CTAAG":14312, "CTATA":13240, "CTATT":22692, "CTATC":29629, "CTATG":21742, "CTACA":23525, "CTACT":21144, "CTACC":36255, "CTACG":23945, "CTAGA":64791, "CTAGT":9880, "CTAGC":14710, "CTAGG":14168, "CTTAA":14898, "CTTAT":35551, "CTTAC":15200, "CTTAG":26144, "CTTTA":29396, "CTTTT":71921, "CTTTC":65360, "CTTTG":53283, "CTTCA":68645, "CTTCT":102995, "CTTCC":83078, "CTTCG":64992, "CTTGA":53113, "CTTGT":48481, "CTTGC":54592, "CTTGG":57587, "CTCAA":46911, "CTCAT":36706, "CTCAC":35866, "CTCAG":45945, "CTCTA":23060, "CTCTT":60983, "CTCTC":58767, "CTCTG":45736, "CTCCA":223302, "CTCCT":151846, "CTCCC":78557, "CTCCG":66690, "CTCGA":53979, "CTCGT":44694, 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"CGGAC":29511, "CGGAG":72621, "CGGTA":31219, "CGGTT":45824, "CGGTC":50865, "CGGTG":61054, "CGGCA":74340, "CGGCT":63668, "CGGCC":77329, "CGGCG":104690, "CGGGA":51875, "CGGGT":43173, "CGGGC":55864, "CGGGG":55771, "GAAAA":65590, "GAAAT":45447, "GAAAC":47233, "GAAAG":59720, "GAATA":29339, "GAATT":36418, "GAATC":38820, "GAATG":36146, "GAACA":47128, "GAACT":242312, "GAACC":50691, "GAACG":37058, "GAAGA":646539, "GAAGT":39241, "GAAGC":68568, "GAAGG":64130, "GATAA":28636, "GATAT":32051, "GATAC":23377, "GATAG":43789, "GATTA":24338, "GATTT":51140, "GATTC":42033, "GATTG":43257, "GATCA":50925, "GATCT":47435, "GATCC":46522, "GATCG":670601, "GATGA":70200, "GATGT":37710, "GATGC":46605, "GATGG":61968, "GACAA":42522, "GACAT":29744, "GACAC":26975, "GACAG":45252, "GACTA":18646, "GACTT":35117, "GACTC":26268, "GACTG":28472, "GACCA":59326, "GACCT":43376, "GACCC":48684, "GACCG":49954, "GACGA":63889, "GACGT":25584, "GACGC":39328, "GACGG":46901, "GAGAA":67550, "GAGAT":188258, "GAGAC":44095, "GAGAG":59039, "GAGTA":19409, "GAGTT":34940, "GAGTC":24506, "GAGTG":22897, "GAGCA":525554, "GAGCT":38405, "GAGCC":47392, "GAGCG":45201, "GAGGA":114902, "GAGGT":44862, "GAGGC":66864, "GAGGG":49221, "GTAAA":20266, "GTAAT":17060, "GTAAC":16452, "GTAAG":17346, "GTATA":11547, "GTATT":22278, "GTATC":21726, "GTATG":19036, "GTACA":16943, "GTACT":16539, "GTACC":21557, "GTACG":15892, "GTAGA":81346, "GTAGT":18637, "GTAGC":25261, "GTAGG":22152, "GTTAA":12654, "GTTAT":19884, "GTTAC":18904, "GTTAG":26145, "GTTTA":22951, "GTTTT":54374, "GTTTC":53604, "GTTTG":54383, "GTTCA":41018, "GTTCT":48244, "GTTCC":61292, "GTTCG":42247, "GTTGA":49091, "GTTGT":50368, "GTTGC":52106, "GTTGG":69715, "GTCAA":37019, "GTCAT":33919, "GTCAC":103010, "GTCAG":40571, "GTCTA":19412, "GTCTT":45745, "GTCTC":47056, "GTCTG":322838, "GTCCA":39334, "GTCCT":45411, "GTCCC":37348, "GTCCG":29707, "GTCGA":48148, "GTCGT":43421, "GTCGC":48634, "GTCGG":47156, "GTGAA":41732, "GTGAT":40733, "GTGAC":28159, "GTGAG":36004, "GTGTA":15141, "GTGTT":35630, "GTGTC":24224, "GTGTG":43776, "GTGCA":30742, "GTGCT":64396, "GTGCC":41311, "GTGCG":38972, "GTGGA":49525, "GTGGT":73308, "GTGGC":57906, "GTGGG":58793, "GCAAA":45786, "GCAAT":33762, "GCAAC":47031, "GCAAG":57690, "GCATA":23828, "GCATT":32508, "GCATC":44809, "GCATG":34990, "GCACA":464343, "GCACT":22301, "GCACC":63181, "GCACG":36137, "GCAGA":116080, "GCAGT":32532, "GCAGC":100555, "GCAGG":101379, "GCTAA":15101, "GCTAT":22922, "GCTAC":25190, "GCTAG":30355, "GCTTA":35948, "GCTTT":51928, "GCTTC":81398, "GCTTG":57490, "GCTCA":42633, "GCTCT":42281, "GCTCC":79374, "GCTCG":55375, "GCTGA":52677, "GCTGT":45360, "GCTGC":111177, "GCTGG":95661, "GCCAA":62675, "GCCAT":49934, "GCCAC":64940, "GCCAG":89246, "GCCTA":25951, "GCCTT":56887, "GCCTC":75997, "GCCTG":72341, "GCCCA":68127, "GCCCT":51753, "GCCCC":72013, "GCCCG":59957, "GCCGA":72521, "GCCGT":55336, "GCCGC":112834, "GCCGG":84018, "GCGAA":45367, "GCGAT":46777, "GCGAC":49537, "GCGAG":58927, "GCGTA":18251, "GCGTT":33781, "GCGTC":38151, "GCGTG":39087, "GCGCA":45469, "GCGCT":44411, "GCGCC":69812, "GCGCG":49250, "GCGGA":61083, "GCGGT":57538, "GCGGC":101680, "GCGGG":67689, "GGAAA":59723, "GGAAT":41090, "GGAAC":50594, "GGAAG":620134, "GGATA":36006, "GGATT":44678, "GGATC":43299, "GGATG":55113, "GGACA":36786, "GGACT":27253, "GGACC":37124, "GGACG":39297, "GGAGA":137835, "GGAGT":31144, "GGAGC":65013, "GGAGG":118253, "GGTAA":21709, "GGTAT":24070, "GGTAC":21344, "GGTAG":48468, "GGTTA":23673, "GGTTT":60759, "GGTTC":52234, "GGTTG":77474, "GGTCA":44471, "GGTCT":49962, "GGTCC":36953, "GGTCG":53641, "GGTGA":60381, "GGTGT":43518, "GGTGC":55228, "GGTGG":104612, "GGCAA":57516, "GGCAT":42907, "GGCAC":39613, "GGCAG":94100, "GGCTA":28662, "GGCTT":60471, "GGCTC":48501, "GGCTG":77826, "GGCCA":65275, "GGCCT":55343, "GGCCC":51108, "GGCCG":72624, "GGCGA":82908, "GGCGT":43188, "GGCGC":66218, "GGCGG":118327, "GGGAA":48735, "GGGAT":43221, "GGGAC":32265, "GGGAG":70577, "GGGTA":24031, "GGGTT":58986, "GGGTC":41125, "GGGTG":57366, "GGGCA":56209, "GGGCT":51160, "GGGCC":46832, "GGGCG":62972, "GGGGA":55358, "GGGGT":52272, "GGGGC":58548, "GGGGG":161269 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1012997, "total_bases": 61792817, "q20_bases": 59497883, "q30_bases": 56264297, "total_cycles": 61, "quality_curves": { "A":[39.4212,39.2889,39.0653,38.9342,38.9688,39.0892,39.1849,39.1292,39.1248,39.1603,39.1426,39.1686,39.2025,39.1745,39.1017,39.0839,39.1729,39.1189,39.2172,39.0744,38.3851,39.0929,39.1278,39.1581,38.5004,39.0636,39.1048,38.2837,38.9481,37.9065,39.051,39.1624,39.0411,38.8053,38.4599,39.0026,39.0035,38.9995,38.7715,38.2997,38.6644,37.7275,38.4492,38.1702,38.1,38.4187,38.2964,36.9915,37.7033,36.6273,36.2564,35.8672,36.9604,36.5846,36.1629,34.5477,34.1151,33.5242,32.9232,33.5796,32.4928], 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"GGGCC":51433, "GGGCG":77087, "GGGGA":102800, "GGGGT":71373, "GGGGC":72122, "GGGGG":140414 }, "overrepresented_sequences": { } }, "merged_and_filtered": { "total_reads": 813882, "total_bases": 42990576, "q20_bases": 42763684, "q30_bases": 41565198, "total_cycles": 91, "quality_curves": { 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"CCTGG":60229, "CCCAA":65055, "CCCAT":42189, "CCCAC":75100, "CCCAG":60964, "CCCTA":19766, "CCCTT":44551, "CCCTC":64156, "CCCTG":55440, "CCCCA":75844, "CCCCT":56835, "CCCCC":66401, "CCCCG":58904, "CCCGA":45278, "CCCGT":33930, "CCCGC":72325, "CCCGG":54347, "CCGAA":43349, "CCGAT":40426, "CCGAC":47687, "CCGAG":46542, "CCGTA":19129, "CCGTT":37385, "CCGTC":50391, "CCGTG":34354, "CCGCA":51695, "CCGCT":60069, "CCGCC":124533, "CCGCG":52976, "CCGGA":46803, "CCGGT":48640, "CCGGC":79060, "CCGGG":50961, "CGAAA":39748, "CGAAT":29655, "CGAAC":35273, "CGAAG":48874, "CGATA":24709, "CGATT":35498, "CGATC":47407, "CGATG":51309, "CGACA":36902, "CGACT":30313, "CGACC":56224, "CGACG":54471, "CGAGA":41277, "CGAGT":24215, "CGAGC":46320, "CGAGG":55878, "CGTAA":15872, "CGTAT":15093, "CGTAC":14278, "CGTAG":19719, "CGTTA":11886, "CGTTT":33453, "CGTTC":38009, "CGTTG":38188, "CGTCA":34402, "CGTCT":35932, "CGTCC":39766, "CGTCG":54474, "CGTGA":29456, "CGTGT":22843, "CGTGC":30252, "CGTGG":39624, "CGCAA":33599, "CGCAT":28620, "CGCAC":44043, "CGCAG":44953, "CGCTA":14610, "CGCTT":40563, "CGCTC":47905, "CGCTG":57650, "CGCCA":66320, "CGCCT":71063, "CGCCC":68060, "CGCCG":98775, "CGCGA":37163, "CGCGT":24056, "CGCGC":46020, "CGCGG":50229, "CGGAA":40130, "CGGAT":35206, "CGGAC":25754, "CGGAG":50148, "CGGTA":22950, "CGGTT":41812, "CGGTC":45509, "CGGTG":53859, "CGGCA":60039, "CGGCT":57767, "CGGCC":68172, "CGGCG":91236, "CGGGA":42597, "CGGGT":38701, "CGGGC":48894, "CGGGG":48437, "GAAAA":56266, "GAAAT":41168, "GAAAC":43264, "GAAAG":43770, "GAATA":24395, "GAATT":33401, "GAATC":35119, "GAATG":33159, "GAACA":38122, "GAACT":35024, "GAACC":44912, "GAACG":32619, "GAAGA":70819, "GAAGT":35600, "GAAGC":61440, "GAAGG":57052, "GATAA":25026, "GATAT":29592, "GATAC":21342, "GATAG":24320, "GATTA":19610, "GATTT":47123, "GATTC":38403, "GATTG":39361, "GATCA":42395, "GATCT":42920, "GATCC":41861, "GATCG":44373, "GATGA":60997, "GATGT":34254, "GATGC":41761, "GATGG":55567, "GACAA":36699, "GACAT":26804, "GACAC":23905, "GACAG":28102, "GACTA":14281, "GACTT":32402, "GACTC":23844, "GACTG":25393, "GACCA":49469, "GACCT":39132, "GACCC":43201, "GACCG":44128, "GACGA":54796, "GACGT":22687, "GACGC":34555, "GACGG":41808, "GAGAA":57590, "GAGAT":42944, "GAGAC":39340, "GAGAG":42238, "GAGTA":14758, "GAGTT":31744, "GAGTC":22142, "GAGTG":20335, "GAGCA":53655, "GAGCT":34405, "GAGCC":41829, "GAGCG":39627, "GAGGA":94604, "GAGGT":39989, "GAGGC":58747, "GAGGG":42731, "GTAAA":18157, "GTAAT":15789, "GTAAC":14919, "GTAAG":11702, "GTATA":9262, "GTATT":20623, "GTATC":19847, "GTATG":17414, "GTACA":13967, "GTACT":15024, "GTACC":19605, "GTACG":14152, "GTAGA":21229, "GTAGT":17073, "GTAGC":23103, "GTAGG":19696, "GTTAA":10888, "GTTAT":18547, "GTTAC":17552, "GTTAG":10918, "GTTTA":17785, "GTTTT":50154, "GTTTC":48883, "GTTTG":49851, "GTTCA":35520, "GTTCT":44269, "GTTCC":55715, "GTTCG":38092, "GTTGA":42226, "GTTGT":46226, "GTTGC":47547, "GTTGG":63403, "GTCAA":31358, "GTCAT":31148, "GTCAC":26915, "GTCAG":26500, "GTCTA":13975, "GTCTT":41938, "GTCTC":44253, "GTCTG":33429, "GTCCA":33320, "GTCCT":41369, "GTCCC":33813, "GTCCG":26431, "GTCGA":40622, "GTCGT":39102, "GTCGC":43671, "GTCGG":41576, "GTGAA":35600, "GTGAT":36866, "GTGAC":25091, "GTGAG":25949, "GTGTA":10626, "GTGTT":32287, "GTGTC":21407, "GTGTG":37607, "GTGCA":24930, "GTGCT":38871, "GTGCC":37110, "GTGCG":33538, "GTGGA":40954, "GTGGT":65588, "GTGGC":51839, "GTGGG":51197, "GCAAA":38511, "GCAAT":30608, "GCAAC":42200, "GCAAG":41449, "GCATA":18208, "GCATT":29959, "GCATC":40470, "GCATG":31983, "GCACA":38937, "GCACT":19979, "GCACC":55979, "GCACG":30915, "GCAGA":46867, "GCAGT":29733, "GCAGC":91085, "GCAGG":88494, "GCTAA":12877, "GCTAT":20760, "GCTAC":22818, "GCTAG":11549, "GCTTA":14215, "GCTTT":48042, "GCTTC":75124, "GCTTG":52846, "GCTCA":35677, "GCTCT":38309, "GCTCC":73264, "GCTCG":49486, "GCTGA":44442, "GCTGT":41240, "GCTGC":102327, "GCTGG":85707, "GCCAA":53141, "GCCAT":45334, "GCCAC":57695, "GCCAG":58564, "GCCTA":18620, "GCCTT":52412, "GCCTC":69305, "GCCTG":64362, "GCCCA":55615, "GCCCT":46793, "GCCCC":64073, "GCCCG":52366, "GCCGA":60413, "GCCGT":49843, "GCCGC":100420, "GCCGG":73580, "GCGAA":37196, "GCGAT":41905, "GCGAC":44006, "GCGAG":42581, "GCGTA":12895, "GCGTT":30632, "GCGTC":33406, "GCGTG":33470, "GCGCA":36164, "GCGCT":39658, "GCGCC":62001, "GCGCG":42895, "GCGGA":48306, "GCGGT":51352, "GCGGC":89684, "GCGGG":58566, "GGAAA":49046, "GGAAT":37387, "GGAAC":45220, "GGAAG":55940, "GGATA":27778, "GGATT":40968, "GGATC":38692, "GGATG":49271, "GGACA":29220, "GGACT":24745, "GGACC":32977, "GGACG":34184, "GGAGA":70652, "GGAGT":28081, "GGAGC":57306, "GGAGG":100509, "GGTAA":18245, "GGTAT":22251, "GGTAC":19272, "GGTAG":24626, "GGTTA":17170, "GGTTT":55806, "GGTTC":47486, "GGTTG":70014, "GGTCA":36649, "GGTCT":45605, "GGTCC":33223, "GGTCG":47415, "GGTGA":50810, "GGTGT":38786, "GGTGC":49384, "GGTGG":92259, "GGCAA":47901, "GGCAT":38906, "GGCAC":35133, "GGCAG":63582, "GGCTA":21162, "GGCTT":55214, "GGCTC":44046, "GGCTG":69189, "GGCCA":52142, "GGCCT":49745, "GGCCC":44894, "GGCCG":63220, "GGCGA":69062, "GGCGT":38614, "GGCGC":57963, "GGCGG":102317, "GGGAA":39941, "GGGAT":38683, "GGGAC":28538, "GGGAG":49058, "GGGTA":17128, "GGGTT":53139, "GGGTC":36895, "GGGTG":49732, "GGGCA":44616, "GGGCT":46098, "GGGCC":41160, "GGGCG":54384, "GGGGA":44192, "GGGGT":45395, "GGGGC":51099, "GGGGG":39689 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23B_S8_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23B_S8_R2_001.fastq.gz -o AM-AL-23B.trim.R1.fastq.gz -O AM-AL-23B.trim.R2.fastq.gz -m --merged_out AM-AL-23B.trim.merged.fastq.gz " }