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"CGGAG":72847, "CGGTA":30253, "CGGTT":44767, "CGGTC":49345, "CGGTG":59007, "CGGCA":73723, "CGGCT":64293, "CGGCC":78239, "CGGCG":102944, "CGGGA":52071, "CGGGT":42472, "CGGGC":55331, "CGGGG":55597, "GAAAA":61859, "GAAAT":57664, "GAAAC":44973, "GAAAG":56990, "GAATA":27611, "GAATT":34127, "GAATC":36337, "GAATG":33940, "GAACA":44603, "GAACT":244420, "GAACC":49643, "GAACG":35458, "GAAGA":642278, "GAAGT":37824, "GAAGC":67929, "GAAGG":64158, "GATAA":26858, "GATAT":30154, "GATAC":22641, "GATAG":42900, "GATTA":22523, "GATTT":47119, "GATTC":39160, "GATTG":40811, "GATCA":48949, "GATCT":45227, "GATCC":44776, "GATCG":663382, "GATGA":66719, "GATGT":35716, "GATGC":44889, "GATGG":59569, "GACAA":40741, "GACAT":28114, "GACAC":26238, "GACAG":43714, "GACTA":17080, "GACTT":33903, "GACTC":25240, "GACTG":27299, "GACCA":56110, "GACCT":41650, "GACCC":47138, "GACCG":48339, "GACGA":61750, "GACGT":24424, "GACGC":38015, "GACGG":45836, "GAGAA":65359, "GAGAT":185161, "GAGAC":42643, "GAGAG":57412, "GAGTA":18442, 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"GCGCT":43120, "GCGCC":70133, "GCGCG":48351, "GCGGA":60435, "GCGGT":56668, "GCGGC":101028, "GCGGG":67724, "GGAAA":57290, "GGAAT":38568, "GGAAC":48949, "GGAAG":616281, "GGATA":34873, "GGATT":42623, "GGATC":42119, "GGATG":52556, "GGACA":36184, "GGACT":26071, "GGACC":36048, "GGACG":38544, "GGAGA":137580, "GGAGT":30095, "GGAGC":64271, "GGAGG":118645, "GGTAA":20769, "GGTAT":23109, "GGTAC":20614, "GGTAG":47689, "GGTTA":22942, "GGTTT":58724, "GGTTC":51428, "GGTTG":77440, "GGTCA":43039, "GGTCT":49813, "GGTCC":36995, "GGTCG":51495, "GGTGA":58132, "GGTGT":43305, "GGTGC":54465, "GGTGG":103411, "GGCAA":55102, "GGCAT":41411, "GGCAC":39865, "GGCAG":95464, "GGCTA":27771, "GGCTT":59165, "GGCTC":48035, "GGCTG":77076, "GGCCA":65147, "GGCCT":56084, "GGCCC":51505, "GGCCG":72909, "GGCGA":80241, "GGCGT":41309, "GGCGC":64472, "GGCGG":118231, "GGGAA":47046, "GGGAT":41619, "GGGAC":31629, "GGGAG":71061, "GGGTA":23844, "GGGTT":58850, "GGGTC":40899, "GGGTG":56520, "GGGCA":56020, "GGGCT":50379, "GGGCC":47542, "GGGCG":61622, "GGGGA":54237, "GGGGT":52495, "GGGGC":58530, "GGGGG":163509 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 992685, "total_bases": 60553785, "q20_bases": 58416932, "q30_bases": 55265795, "total_cycles": 61, "quality_curves": { "A":[39.2827,39.152,39.1348,38.8614,38.8972,39.1489,39.208,39.126,39.1535,39.1439,39.1363,39.1385,39.1754,39.1648,39.0757,39.0698,39.177,39.1115,39.1992,39.0918,38.3655,39.0865,39.1623,39.1561,38.5303,39.0831,39.1111,38.4072,39.0198,37.9745,39.0339,39.1267,39.0046,39.0753,38.91,38.9785,38.6635,39.0026,38.5893,38.9426,38.178,38.3594,38.4204,38.1574,38.0575,38.3367,38.2823,37.0259,37.592,36.6576,36.3885,36.0144,36.8658,36.5348,36.1487,34.744,34.5521,34.0141,33.5923,33.9076,33.2707], 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"CTTGC":49269, "CTTGG":52100, "CTCAA":38745, "CTCAT":32390, "CTCAC":31829, "CTCAG":31448, "CTCTA":17508, "CTCTT":54916, "CTCTC":55903, "CTCTG":41326, "CTCCA":66234, "CTCCT":149500, "CTCCC":76440, "CTCCG":62306, "CTCGA":45142, "CTCGT":40461, "CTCGC":51465, "CTCGG":47009, "CTGAA":36381, "CTGAT":37042, "CTGAC":28824, "CTGAG":29404, "CTGTA":14737, "CTGTT":50857, "CTGTC":32319, "CTGTG":32453, "CTGCA":49195, "CTGCT":135796, "CTGCC":83062, "CTGCG":49079, "CTGGA":54252, "CTGGT":61870, "CTGGC":60485, "CTGGG":55336, "CCAAA":57130, "CCAAT":36507, "CCAAC":73400, "CCAAG":49706, "CCATA":23951, "CCATT":36939, "CCATC":60689, "CCATG":41055, "CCACA":58690, "CCACT":31536, "CCACC":129156, "CCACG":44292, "CCAGA":48953, "CCAGT":42417, "CCAGC":93064, "CCAGG":57249, "CCTAA":14539, "CCTAT":19593, "CCTAC":24282, "CCTAG":13320, "CCTTA":14998, "CCTTT":53774, "CCTTC":79854, "CCTTG":56494, "CCTCA":46863, "CCTCT":57730, "CCTCC":150744, "CCTCG":65688, "CCTGA":42346, "CCTGT":48191, "CCTGC":119488, "CCTGG":60311, "CCCAA":63009, "CCCAT":41163, "CCCAC":74312, "CCCAG":60865, "CCCTA":18964, "CCCTT":44330, "CCCTC":67302, "CCCTG":55862, "CCCCA":75685, "CCCCT":57793, "CCCCC":67233, "CCCCG":59349, "CCCGA":44092, "CCCGT":33479, "CCCGC":74207, "CCCGG":54457, "CCGAA":41220, "CCGAT":38973, "CCGAC":46042, "CCGAG":44930, "CCGTA":18376, "CCGTT":36256, "CCGTC":49638, "CCGTG":33328, "CCGCA":51539, "CCGCT":60577, "CCGCC":128055, "CCGCG":53030, "CCGGA":46369, "CCGGT":47827, "CCGGC":80025, "CCGGG":50710, "CGAAA":36823, "CGAAT":27743, "CGAAC":33669, "CGAAG":47778, "CGATA":23702, "CGATT":32275, "CGATC":45307, "CGATG":48818, "CGACA":35024, "CGACT":29246, "CGACC":53945, "CGACG":52738, "CGAGA":39632, "CGAGT":22553, "CGAGC":44885, "CGAGG":53491, "CGTAA":15169, "CGTAT":13863, "CGTAC":13525, "CGTAG":18736, "CGTTA":11439, "CGTTT":32117, "CGTTC":36388, "CGTTG":35585, "CGTCA":33087, "CGTCT":35389, "CGTCC":40051, "CGTCG":53560, "CGTGA":27720, "CGTGT":21214, "CGTGC":29021, "CGTGG":38418, "CGCAA":32649, "CGCAT":27027, "CGCAC":42559, "CGCAG":44344, "CGCTA":14244, "CGCTT":39370, "CGCTC":47937, "CGCTG":56359, "CGCCA":65379, "CGCCT":72097, "CGCCC":68880, "CGCCG":98792, "CGCGA":36049, "CGCGT":23435, "CGCGC":46168, "CGCGG":49645, "CGGAA":38479, "CGGAT":33497, "CGGAC":24884, "CGGAG":49409, "CGGTA":22181, "CGGTT":40562, "CGGTC":43926, "CGGTG":51982, "CGGCA":58902, "CGGCT":57913, "CGGCC":68649, "CGGCG":89400, "CGGGA":41762, "CGGGT":37925, "CGGGC":48356, "CGGGG":47725, "GAAAA":52727, "GAAAT":38957, "GAAAC":40782, "GAAAG":41803, "GAATA":22853, "GAATT":31331, "GAATC":32739, "GAATG":30918, "GAACA":35670, "GAACT":32949, "GAACC":43869, "GAACG":31147, "GAAGA":68341, "GAAGT":34224, "GAAGC":60739, "GAAGG":56367, "GATAA":23555, "GATAT":27831, "GATAC":20575, "GATAG":23692, "GATTA":17816, "GATTT":43321, "GATTC":35763, "GATTG":36964, "GATCA":40620, "GATCT":40689, "GATCC":40521, "GATCG":41654, "GATGA":57923, "GATGT":32408, "GATGC":40278, "GATGG":53338, "GACAA":34913, "GACAT":25207, "GACAC":23005, "GACAG":26835, "GACTA":12950, "GACTT":31249, "GACTC":22772, "GACTG":24420, "GACCA":46565, "GACCT":37173, "GACCC":41886, "GACCG":42529, "GACGA":52830, "GACGT":21635, "GACGC":33228, "GACGG":40733, "GAGAA":55162, "GAGAT":40169, "GAGAC":38157, "GAGAG":39834, "GAGTA":14035, "GAGTT":30062, "GAGTC":21064, "GAGTG":19395, "GAGCA":53384, "GAGCT":32277, "GAGCC":39735, "GAGCG":37703, "GAGGA":92566, "GAGGT":38529, "GAGGC":56852, "GAGGG":41580, "GTAAA":17433, "GTAAT":14445, "GTAAC":14675, "GTAAG":10862, "GTATA":8606, "GTATT":19397, "GTATC":18952, "GTATG":16619, "GTACA":13042, "GTACT":14329, "GTACC":19014, "GTACG":13683, "GTAGA":19865, "GTAGT":16211, "GTAGC":22723, "GTAGG":19441, "GTTAA":10267, "GTTAT":17392, "GTTAC":17497, "GTTAG":10505, "GTTTA":16705, "GTTTT":47748, "GTTTC":46465, "GTTTG":48299, "GTTCA":33773, "GTTCT":42497, "GTTCC":55833, "GTTCG":36624, "GTTGA":40239, "GTTGT":44706, "GTTGC":46047, "GTTGG":62869, "GTCAA":29448, "GTCAT":30190, "GTCAC":25443, "GTCAG":25448, "GTCTA":13103, "GTCTT":40573, "GTCTC":44267, "GTCTG":32693, "GTCCA":32565, "GTCCT":41518, "GTCCC":34400, "GTCCG":25904, "GTCGA":38925, "GTCGT":38416, "GTCGC":42148, "GTCGG":40123, "GTGAA":34621, "GTGAT":34670, "GTGAC":23334, "GTGAG":24405, "GTGTA":10164, "GTGTT":31576, "GTGTC":20518, "GTGTG":36504, "GTGCA":23395, "GTGCT":38363, "GTGCC":36017, "GTGCG":31963, "GTGGA":39579, "GTGGT":64589, "GTGGC":50459, "GTGGG":50823, "GCAAA":36267, "GCAAT":29196, "GCAAC":41006, "GCAAG":40070, "GCATA":16996, "GCATT":28305, "GCATC":39022, "GCATG":30633, "GCACA":36644, "GCACT":19980, "GCACC":56588, "GCACG":29840, "GCAGA":46182, "GCAGT":29026, "GCAGC":92085, "GCAGG":88695, "GCTAA":12070, "GCTAT":19537, "GCTAC":22187, "GCTAG":11012, "GCTTA":13375, "GCTTT":45554, "GCTTC":74207, "GCTTG":51755, "GCTCA":34740, "GCTCT":37706, "GCTCC":76713, "GCTCG":48200, "GCTGA":42423, "GCTGT":40775, "GCTGC":103986, "GCTGG":84397, "GCCAA":51201, "GCCAT":44044, "GCCAC":57174, "GCCAG":57528, "GCCTA":17684, "GCCTT":51455, "GCCTC":70521, "GCCTG":64722, "GCCCA":53819, "GCCCT":47475, "GCCCC":65339, "GCCCG":52119, "GCCGA":58317, "GCCGT":48826, "GCCGC":101922, "GCCGG":73407, "GCGAA":35526, "GCGAT":39399, "GCGAC":42114, "GCGAG":40742, "GCGTA":12120, "GCGTT":29090, "GCGTC":32703, "GCGTG":31516, "GCGCA":35168, "GCGCT":38456, "GCGCC":61987, "GCGCG":41980, "GCGGA":46882, "GCGGT":50540, "GCGGC":88719, "GCGGG":58412, "GGAAA":46768, "GGAAT":34807, "GGAAC":43402, "GGAAG":54157, "GGATA":26599, "GGATT":38889, "GGATC":37656, "GGATG":46916, "GGACA":28190, "GGACT":23654, "GGACC":31822, "GGACG":33455, "GGAGA":68805, "GGAGT":27071, "GGAGC":56308, "GGAGG":99677, "GGTAA":17302, "GGTAT":21197, "GGTAC":18699, "GGTAG":24581, "GGTTA":16320, "GGTTT":53853, "GGTTC":46669, "GGTTG":69988, "GGTCA":35018, "GGTCT":45165, "GGTCC":33236, "GGTCG":45068, "GGTGA":48393, "GGTGT":38980, "GGTGC":48450, "GGTGG":91637, "GGCAA":45278, "GGCAT":37212, "GGCAC":34685, "GGCAG":64040, "GGCTA":20309, "GGCTT":53758, "GGCTC":43276, "GGCTG":68682, "GGCCA":51638, "GGCCT":50557, "GGCCC":45148, "GGCCG":63144, "GGCGA":65838, "GGCGT":36902, "GGCGC":56191, "GGCGG":102003, "GGGAA":38066, "GGGAT":37143, "GGGAC":27755, "GGGAG":48562, "GGGTA":16923, "GGGTT":53117, "GGGTC":36251, "GGGTG":49532, "GGGCA":43404, "GGGCT":45336, "GGGCC":41748, "GGGCG":52893, "GGGGA":43080, "GGGGT":46149, "GGGGC":50715, "GGGGG":39827 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23A_S7_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-23A_S7_R2_001.fastq.gz -o AM-AL-23A.trim.R1.fastq.gz -O AM-AL-23A.trim.R2.fastq.gz -m --merged_out AM-AL-23A.trim.merged.fastq.gz " }