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"TCCCG":49450, "TCCGA":29145, "TCCGT":27560, "TCCGC":55517, "TCCGG":47979, "TCGAA":33201, "TCGAT":38535, "TCGAC":36907, "TCGAG":40577, "TCGTA":17739, "TCGTT":26297, "TCGTC":49836, "TCGTG":26986, "TCGCA":23645, "TCGCT":32227, "TCGCC":68061, "TCGCG":32332, "TCGGA":444614, "TCGGT":32957, "TCGGC":55834, "TCGGG":36359, "TGAAA":28421, "TGAAT":20396, "TGAAC":192218, "TGAAG":45813, "TGATA":18692, "TGATT":26995, "TGATC":38884, "TGATG":43475, "TGACA":20239, "TGACT":17406, "TGACC":35666, "TGACG":30059, "TGAGA":41427, "TGAGT":16166, "TGAGC":30326, "TGAGG":34652, "TGTAA":8337, "TGTAT":9771, "TGTAC":10970, "TGTAG":22008, "TGTTA":14185, "TGTTT":27847, "TGTTC":39608, "TGTTG":43600, "TGTCA":18759, "TGTCT":22959, "TGTCC":28351, "TGTCG":30512, "TGTGA":17105, "TGTGT":18315, "TGTGC":26010, "TGTGG":40365, "TGCAA":23249, "TGCAT":20119, "TGCAC":24158, "TGCAG":44359, "TGCTA":15381, "TGCTT":48153, "TGCTC":59809, "TGCTG":85440, "TGCCA":40993, "TGCCT":41955, "TGCCC":50066, "TGCCG":61135, "TGCGA":22885, 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"CTGAT":30772, "CTGAC":25341, "CTGAG":31994, "CTGTA":14204, "CTGTT":40521, "CTGTC":26808, "CTGTG":27429, "CTGCA":41740, "CTGCT":104911, "CTGCC":72105, "CTGCG":42445, "CTGGA":50820, "CTGGT":53419, "CTGGC":54477, "CTGGG":56773, "CCAAA":47169, "CCAAT":29655, "CCAAC":63170, "CCAAG":54977, "CCATA":22506, "CCATT":28796, "CCATC":55799, "CCATG":35706, "CCACA":54916, "CCACT":27548, "CCACC":116511, "CCACG":41107, "CCAGA":96063, "CCAGT":125391, "CCAGC":83912, "CCAGG":52184, "CCTAA":12176, "CCTAT":15956, "CCTAC":21617, "CCTAG":24698, "CCTTA":16686, "CCTTT":39622, "CCTTC":67357, "CCTTG":48214, "CCTCA":44264, "CCTCT":47107, "CCTCC":133166, "CCTCG":57116, "CCTGA":39618, "CCTGT":40933, "CCTGC":102665, "CCTGG":54451, "CCCAA":56984, "CCCAT":35749, "CCCAC":67532, "CCCAG":71632, "CCCTA":19518, "CCCTT":36469, "CCCTC":57959, "CCCTG":48870, "CCCCA":73567, "CCCCT":49223, "CCCCC":62458, "CCCCG":55559, "CCCGA":45339, "CCCGT":31115, "CCCGC":70710, "CCCGG":49838, "CCGAA":41602, "CCGAT":37207, "CCGAC":43167, 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"CGGTT":34092, "CGGTC":38800, "CGGTG":47676, "CGGCA":56771, "CGGCT":49271, "CGGCC":63050, "CGGCG":80872, "CGGGA":40721, "CGGGT":32488, "CGGGC":44711, "CGGGG":44049, "GAAAA":38523, "GAAAT":28076, "GAAAC":32491, "GAAAG":39560, "GAATA":18236, "GAATT":22152, "GAATC":38485, "GAATG":25162, "GAACA":35145, "GAACT":179242, "GAACC":38968, "GAACG":27433, "GAAGA":463693, "GAAGT":26044, "GAAGC":50458, "GAAGG":47444, "GATAA":17809, "GATAT":19881, "GATAC":16061, "GATAG":32341, "GATTA":15509, "GATTT":31057, "GATTC":30526, "GATTG":31099, "GATCA":38049, "GATCT":35237, "GATCC":37699, "GATCG":480966, "GATGA":52247, "GATGT":27642, "GATGC":35404, "GATGG":49373, "GACAA":30662, "GACAT":21506, "GACAC":20615, "GACAG":32970, "GACTA":12813, "GACTT":24347, "GACTC":19221, "GACTG":21650, "GACCA":44488, "GACCT":32312, "GACCC":36698, "GACCG":37945, "GACGA":48340, "GACGT":19213, "GACGC":29741, "GACGG":36408, "GAGAA":47269, "GAGAT":134168, "GAGAC":32671, "GAGAG":39908, "GAGTA":13522, "GAGTT":24341, "GAGTC":17682, "GAGTG":16020, "GAGCA":377218, "GAGCT":28668, "GAGCC":37419, "GAGCG":33022, "GAGGA":83032, "GAGGT":33265, "GAGGC":51172, "GAGGG":36148, "GTAAA":11487, "GTAAT":10240, "GTAAC":10452, "GTAAG":11117, "GTATA":6659, "GTATT":13618, "GTATC":14759, "GTATG":12690, "GTACA":11701, "GTACT":11640, "GTACC":16448, "GTACG":11592, "GTAGA":57723, "GTAGT":12983, "GTAGC":18472, "GTAGG":15693, "GTTAA":7306, "GTTAT":12322, "GTTAC":12833, "GTTAG":17237, "GTTTA":12760, "GTTTT":32683, "GTTTC":37379, "GTTTG":34865, "GTTCA":30265, "GTTCT":34692, "GTTCC":51455, "GTTCG":30958, "GTTGA":33816, "GTTGT":33741, "GTTGC":38902, "GTTGG":51650, "GTCAA":25855, "GTCAT":24914, "GTCAC":81024, "GTCAG":29199, "GTCTA":13617, "GTCTT":31926, "GTCTC":35961, "GTCTG":234520, "GTCCA":30370, "GTCCT":35384, "GTCCC":30721, "GTCCG":23634, "GTCGA":36469, "GTCGT":31626, "GTCGC":36832, "GTCGG":36065, "GTGAA":27683, "GTGAT":29091, "GTGAC":20130, "GTGAG":25280, "GTGTA":9924, "GTGTT":24027, "GTGTC":16765, "GTGTG":24605, "GTGCA":22128, "GTGCT":34140, "GTGCC":31447, "GTGCG":26551, "GTGGA":37054, "GTGGT":54049, "GTGGC":44015, "GTGGG":44571, "GCAAA":31187, "GCAAT":24200, "GCAAC":34634, "GCAAG":42747, "GCATA":16613, "GCATT":21927, "GCATC":35250, "GCATG":25754, "GCACA":330123, "GCACT":16833, "GCACC":51207, "GCACG":26098, "GCAGA":83862, "GCAGT":23184, "GCAGC":71613, "GCAGG":74937, "GCTAA":9676, "GCTAT":16172, "GCTAC":18419, "GCTAG":22195, "GCTTA":12846, "GCTTT":34721, "GCTTC":63606, "GCTTG":41659, "GCTCA":31565, "GCTCT":31094, "GCTCC":67682, "GCTCG":41293, "GCTGA":39275, "GCTGT":33461, "GCTGC":80577, "GCTGG":75832, "GCCAA":48411, "GCCAT":38173, "GCCAC":50716, "GCCAG":70585, "GCCTA":19972, "GCCTT":44720, "GCCTC":63652, "GCCTG":57387, "GCCCA":53981, "GCCCT":41678, "GCCCC":59515, "GCCCG":50147, "GCCGA":57937, "GCCGT":41661, "GCCGC":93066, "GCCGG":66714, "GCGAA":46908, "GCGAT":35236, "GCGAC":35563, "GCGAG":42315, "GCGTA":13123, "GCGTT":23732, "GCGTC":27285, "GCGTG":25753, "GCGCA":33709, "GCGCT":34264, "GCGCC":56043, "GCGCG":38349, "GCGGA":48067, "GCGGT":44739, "GCGGC":78253, "GCGGG":53367, "GGAAA":39880, "GGAAT":28463, "GGAAC":39197, "GGAAG":444329, "GGATA":25992, "GGATT":31249, "GGATC":34147, "GGATG":43639, "GGACA":27218, "GGACT":19742, "GGACC":29096, "GGACG":30970, "GGAGA":100504, "GGAGT":22244, "GGAGC":49689, "GGAGG":87838, "GGTAA":14060, "GGTAT":16107, "GGTAC":15856, "GGTAG":36548, "GGTTA":15539, "GGTTT":41495, "GGTTC":40231, "GGTTG":57648, "GGTCA":32488, "GGTCT":36772, "GGTCC":30198, "GGTCG":40592, "GGTGA":45168, "GGTGT":31036, "GGTGC":45136, "GGTGG":80522, "GGCAA":42091, "GGCAT":32595, "GGCAC":30185, "GGCAG":70307, "GGCTA":21067, "GGCTT":43644, "GGCTC":38147, "GGCTG":61080, "GGCCA":51502, "GGCCT":44463, "GGCCC":41750, "GGCCG":58504, "GGCGA":61375, "GGCGT":31761, "GGCGC":51641, "GGCGG":93234, "GGGAA":35364, "GGGAT":33318, "GGGAC":25016, "GGGAG":52946, "GGGTA":17505, "GGGTT":42888, "GGGTC":31349, "GGGTG":43831, "GGGCA":41897, "GGGCT":39258, "GGGCC":37520, "GGGCG":48270, "GGGGA":41151, "GGGGT":39765, "GGGGC":44468, "GGGGG":120974 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 734465, "total_bases": 44802365, "q20_bases": 43173968, "q30_bases": 40775914, "total_cycles": 61, "quality_curves": { "A":[39.2334,39.1601,39.0378,38.8368,39.0289,39.0258,38.984,39.0867,39.1351,39.1379,39.1305,39.1287,39.1885,39.1486,39.0896,39.0756,39.1698,39.086,39.1967,39.0766,38.3516,39.0642,39.1294,39.1473,38.4837,39.0464,39.1027,38.2593,38.958,37.8485,39.0292,39.1542,39.0232,39.0806,38.7401,38.3143,38.3355,38.928,38.8198,38.8643,38.6043,38.3526,38.3215,38.0025,37.9177,38.2282,38.1223,36.7087,37.5116,36.5426,36.2378,35.8776,36.8157,36.464,35.9903,34.4239,34.2022,33.738,33.3132,33.4415,32.8023], 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"GC":[0.587956,0.560811,0.614462,0.621616,0.613451,0.557977,0.568491,0.552298,0.548397,0.562709,0.563343,0.561984,0.576911,0.574989,0.570531,0.578584,0.579845,0.572468,0.580507,0.577553,0.572912,0.579833,0.577365,0.571917,0.578888,0.576169,0.570728,0.576532,0.578072,0.570154,0.577588,0.574678,0.566274,0.574083,0.575267,0.569291,0.574006,0.570501,0.567747,0.571633,0.571745,0.56538,0.570333,0.570522,0.56451,0.567028,0.570443,0.565687,0.568095,0.566568,0.561987,0.564906,0.567606,0.561688,0.567104,0.567227,0.561524,0.562295,0.566435,0.562496,0.564571,0.566004,0.565398,0.565122,0.56568,0.560102,0.562762,0.568005,0.564219,0.561268,0.566275,0.566385,0.568019,0.567957,0.561603,0.568868,0.574871,0.564038,0.564232,0.569966,0.570628,0.569981,0.573789,0.577018,0.585923,0.593658,0.571863,0.58957,0.585731,0.560293,0.528793] }, "kmer_count": { "AAAAA":30913, "AAAAT":20650, "AAAAC":27820, "AAAAG":27407, "AAATA":13313, "AAATT":16953, "AAATC":25438, "AAATG":19107, "AAACA":23064, "AAACT":18522, 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"CTCAG":26206, "CTCTA":13022, "CTCTT":38951, "CTCTC":40813, "CTCTG":31320, "CTCCA":54793, "CTCCT":117564, "CTCCC":62489, "CTCCG":53134, "CTCGA":36588, "CTCGT":31106, "CTCGC":39779, "CTCGG":37974, "CTGAA":27542, "CTGAT":28883, "CTGAC":23060, "CTGAG":24037, "CTGTA":10950, "CTGTT":37490, "CTGTC":24651, "CTGTG":24973, "CTGCA":35524, "CTGCT":97680, "CTGCC":66595, "CTGCG":38651, "CTGGA":43948, "CTGGT":49246, "CTGGC":50084, "CTGGG":43885, "CCAAA":40634, "CCAAT":27448, "CCAAC":57466, "CCAAG":40091, "CCATA":17769, "CCATT":26928, "CCATC":51581, "CCATG":32847, "CCACA":46462, "CCACT":25344, "CCACC":105578, "CCACG":36979, "CCAGA":39001, "CCAGT":35070, "CCAGC":75986, "CCAGG":46745, "CCTAA":10404, "CCTAT":15028, "CCTAC":19448, "CCTAG":10071, "CCTTA":12068, "CCTTT":37443, "CCTTC":62477, "CCTTG":45142, "CCTCA":38222, "CCTCT":43922, "CCTCC":122034, "CCTCG":52647, "CCTGA":34297, "CCTGT":37642, "CCTGC":94169, "CCTGG":49882, "CCCAA":48922, "CCCAT":33138, "CCCAC":60698, "CCCAG":50224, "CCCTA":14524, "CCCTT":33903, "CCCTC":52919, "CCCTG":44611, "CCCCA":60923, "CCCCT":45226, "CCCCC":53044, "CCCCG":49892, "CCCGA":38098, "CCCGT":28075, "CCCGC":63781, "CCCGG":44497, "CCGAA":33855, "CCGAT":33922, "CCGAC":38897, "CCGAG":36150, "CCGTA":13873, "CCGTT":28517, "CCGTC":41531, "CCGTG":27386, "CCGCA":42111, "CCGCT":49661, "CCGCC":109061, "CCGCG":45238, "CCGGA":37512, "CCGGT":39265, "CCGGC":64703, "CCGGG":41278, "CGAAA":27272, "CGAAT":21171, "CGAAC":26829, "CGAAG":37362, "CGATA":17585, "CGATT":26505, "CGATC":37382, "CGATG":42069, "CGACA":27966, "CGACT":23448, "CGACC":43048, "CGACG":41600, "CGAGA":30754, "CGAGT":17750, "CGAGC":34957, "CGAGG":41886, "CGTAA":10057, "CGTAT":9836, "CGTAC":10721, "CGTAG":14391, "CGTTA":8352, "CGTTT":21872, "CGTTC":29142, "CGTTG":27772, "CGTCA":26557, "CGTCT":28439, "CGTCC":32903, "CGTCG":42546, "CGTGA":20868, "CGTGT":14192, "CGTGC":22410, "CGTGG":31413, "CGCAA":25380, "CGCAT":20950, "CGCAC":31612, "CGCAG":34115, "CGCTA":11343, "CGCTT":30982, "CGCTC":38795, "CGCTG":44990, "CGCCA":54144, "CGCCT":60393, "CGCCC":57246, "CGCCG":82519, "CGCGA":28869, "CGCGT":18516, "CGCGC":37393, "CGCGG":41553, "CGGAA":30717, "CGGAT":28746, "CGGAC":19993, "CGGAG":39127, "CGGTA":17515, "CGGTT":31379, "CGGTC":35244, "CGGTG":42829, "CGGCA":45862, "CGGCT":45102, "CGGCC":56450, "CGGCG":71396, "CGGGA":34210, "CGGGT":29515, "CGGGC":39831, "CGGGG":38879, "GAAAA":33186, "GAAAT":25981, "GAAAC":29706, "GAAAG":29126, "GAATA":15325, "GAATT":20483, "GAATC":26185, "GAATG":23113, "GAACA":29377, "GAACT":26337, "GAACC":35048, "GAACG":24741, "GAAGA":50020, "GAAGT":24007, "GAAGC":45611, "GAAGG":42794, "GATAA":15915, "GATAT":18430, "GATAC":14832, "GATAG":18387, "GATTA":12627, "GATTT":29191, "GATTC":28355, "GATTG":29098, "GATCA":32458, "GATCT":32303, "GATCC":34652, "GATCG":33757, "GATGA":46129, "GATGT":25589, "GATGC":32806, "GATGG":45031, "GACAA":26785, "GACAT":19609, "GACAC":18630, "GACAG":21034, "GACTA":9792, "GACTT":23015, "GACTC":17555, "GACTG":19700, "GACCA":37510, "GACCT":29355, "GACCC":33138, "GACCG":34335, "GACGA":41720, "GACGT":17455, "GACGC":26894, "GACGG":33215, "GAGAA":40907, "GAGAT":30020, "GAGAC":29521, "GAGAG":28484, "GAGTA":10507, "GAGTT":22570, "GAGTC":16213, "GAGTG":14514, "GAGCA":40382, "GAGCT":26118, "GAGCC":34045, "GAGCG":29162, "GAGGA":68699, "GAGGT":30392, "GAGGC":45606, "GAGGG":31746, "GTAAA":10308, "GTAAT":9553, "GTAAC":9588, "GTAAG":8065, "GTATA":5366, "GTATT":12788, "GTATC":13709, "GTATG":11688, "GTACA":9978, "GTACT":10788, "GTACC":15384, "GTACG":10573, "GTAGA":15340, "GTAGT":11976, "GTAGC":16849, "GTAGG":14457, "GTTAA":6492, "GTTAT":11600, "GTTAC":12084, "GTTAG":7793, "GTTTA":9954, "GTTTT":30748, "GTTTC":34739, "GTTTG":32348, "GTTCA":26622, "GTTCT":32470, "GTTCC":47387, "GTTCG":28587, "GTTGA":29908, "GTTGT":31248, "GTTGC":36018, "GTTGG":47798, "GTCAA":22431, "GTCAT":23303, "GTCAC":20053, "GTCAG":19859, "GTCTA":9685, "GTCTT":29791, "GTCTC":34598, "GTCTG":24995, "GTCCA":26116, "GTCCT":32829, "GTCCC":28469, "GTCCG":21532, "GTCGA":30988, "GTCGT":29484, "GTCGC":33777, "GTCGG":32528, "GTGAA":23577, "GTGAT":26580, "GTGAC":18463, "GTGAG":18874, "GTGTA":7218, "GTGTT":22030, "GTGTC":15319, "GTGTG":21896, "GTGCA":18724, "GTGCT":31111, "GTGCC":28720, "GTGCG":23610, "GTGGA":31318, "GTGGT":48878, "GTGGC":40075, "GTGGG":39764, "GCAAA":26312, "GCAAT":22481, "GCAAC":31526, "GCAAG":30712, "GCATA":12977, "GCATT":20258, "GCATC":32457, "GCATG":23547, "GCACA":25408, "GCACT":15551, "GCACC":46063, "GCACG":23414, "GCAGA":34079, "GCAGT":21481, "GCAGC":65332, "GCAGG":65993, "GCTAA":8277, "GCTAT":15131, "GCTAC":16967, "GCTAG":8803, "GCTTA":9342, "GCTTT":32789, "GCTTC":59162, "GCTTG":38667, "GCTCA":27311, "GCTCT":28706, "GCTCC":63236, "GCTCG":37414, "GCTGA":34081, "GCTGT":30735, "GCTGC":74677, "GCTGG":68538, "GCCAA":40946, "GCCAT":35369, "GCCAC":45978, "GCCAG":47182, "GCCTA":14437, "GCCTT":42078, "GCCTC":58630, "GCCTG":52314, "GCCCA":44706, "GCCCT":38054, "GCCCC":53757, "GCCCG":44477, "GCCGA":49143, "GCCGT":38298, "GCCGC":83756, "GCCGG":58846, "GCGAA":27445, "GCGAT":32129, "GCGAC":32188, "GCGAG":31024, "GCGTA":9656, "GCGTT":21739, "GCGTC":24843, "GCGTG":22950, "GCGCA":27282, "GCGCT":31049, "GCGCC":50633, "GCGCG":33774, "GCGGA":37914, "GCGGT":40514, "GCGGC":69643, "GCGGG":46825, "GGAAA":32954, "GGAAT":26324, "GGAAC":35730, "GGAAG":41159, "GGATA":20229, "GGATT":29258, "GGATC":31277, "GGATG":39533, "GGACA":22030, "GGACT":18161, "GGACC":26105, "GGACG":27269, "GGAGA":51839, "GGAGT":20389, "GGAGC":44320, "GGAGG":75285, "GGTAA":12067, "GGTAT":14968, "GGTAC":14620, "GGTAG":18707, "GGTTA":11392, "GGTTT":38887, "GGTTC":37372, "GGTTG":53057, "GGTCA":27069, "GGTCT":34231, "GGTCC":27664, "GGTCG":36591, "GGTGA":38893, "GGTGT":28163, "GGTGC":41001, "GGTGG":72017, "GGCAA":34999, "GGCAT":29978, "GGCAC":27302, "GGCAG":47943, "GGCTA":15805, "GGCTT":40613, "GGCTC":35238, "GGCTG":55409, "GGCCA":41917, "GGCCT":40859, "GGCCC":37356, "GGCCG":51653, "GGCGA":52059, "GGCGT":28864, "GGCGC":45924, "GGCGG":81534, "GGGAA":29285, "GGGAT":30254, "GGGAC":22290, "GGGAG":38241, "GGGTA":12564, "GGGTT":39637, "GGGTC":28464, "GGGTG":38974, "GGGCA":33596, "GGGCT":36036, "GGGCC":33760, "GGGCG":42374, "GGGGA":33435, "GGGGT":35599, "GGGGC":39320, "GGGGG":29943 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-22C_S6_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-22C_S6_R2_001.fastq.gz -o AM-AL-22C.trim.R1.fastq.gz -O AM-AL-22C.trim.R2.fastq.gz -m --merged_out AM-AL-22C.trim.merged.fastq.gz " }