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"CGGAG":66625, "CGGTA":28981, "CGGTT":41281, "CGGTC":44451, "CGGTG":54446, "CGGCA":67816, "CGGCT":55417, "CGGCC":68039, "CGGCG":92553, "CGGGA":48109, "CGGGT":37710, "CGGGC":48743, "CGGGG":49764, "GAAAA":63718, "GAAAT":44105, "GAAAC":45312, "GAAAG":55370, "GAATA":28869, "GAATT":35451, "GAATC":38311, "GAATG":33670, "GAACA":45241, "GAACT":198538, "GAACC":50017, "GAACG":35027, "GAAGA":544479, "GAAGT":34530, "GAAGC":64503, "GAAGG":60606, "GATAA":28498, "GATAT":29344, "GATAC":22131, "GATAG":41997, "GATTA":23529, "GATTT":47834, "GATTC":56839, "GATTG":40765, "GATCA":48727, "GATCT":46655, "GATCC":45568, "GATCG":559640, "GATGA":67277, "GATGT":34027, "GATGC":43044, "GATGG":58792, "GACAA":41534, "GACAT":28321, "GACAC":26162, "GACAG":41058, "GACTA":17339, "GACTT":32417, "GACTC":24589, "GACTG":27499, "GACCA":54955, "GACCT":39025, "GACCC":46094, "GACCG":46265, "GACGA":59087, "GACGT":23129, "GACGC":36478, "GACGG":44878, "GAGAA":66226, "GAGAT":163106, "GAGAC":42978, "GAGAG":52099, "GAGTA":18516, "GAGTT":32249, "GAGTC":22390, "GAGTG":20698, "GAGCA":430731, "GAGCT":34675, "GAGCC":45110, "GAGCG":39857, "GAGGA":101151, "GAGGT":40857, "GAGGC":59213, "GAGGG":43823, "GTAAA":18320, "GTAAT":16510, "GTAAC":14414, "GTAAG":15990, "GTATA":10659, "GTATT":21206, "GTATC":20099, "GTATG":17290, "GTACA":15916, "GTACT":15920, "GTACC":19739, "GTACG":14136, "GTAGA":69872, "GTAGT":16913, "GTAGC":22976, "GTAGG":19979, "GTTAA":12002, "GTTAT":18579, "GTTAC":16366, "GTTAG":22484, "GTTTA":19928, "GTTTT":50150, "GTTTC":49521, "GTTTG":46440, "GTTCA":39448, "GTTCT":44847, "GTTCC":56367, "GTTCG":36718, "GTTGA":44099, "GTTGT":42378, "GTTGC":44517, "GTTGG":60160, "GTCAA":34076, "GTCAT":31378, "GTCAC":86175, "GTCAG":35247, "GTCTA":17871, "GTCTT":42318, "GTCTC":42233, "GTCTG":259512, "GTCCA":36991, "GTCCT":39722, "GTCCC":33214, "GTCCG":26608, "GTCGA":43100, "GTCGT":37358, "GTCGC":41914, "GTCGG":42508, "GTGAA":37480, "GTGAT":35130, "GTGAC":24688, "GTGAG":31892, "GTGTA":13365, "GTGTT":30831, "GTGTC":20393, "GTGTG":28603, "GTGCA":27022, "GTGCT":37378, "GTGCC":34970, "GTGCG":29159, "GTGGA":44628, "GTGGT":59766, "GTGGC":49191, "GTGGG":51286, "GCAAA":43727, "GCAAT":32900, "GCAAC":44197, "GCAAG":52164, "GCATA":22769, "GCATT":29995, "GCATC":42228, "GCATG":31443, "GCACA":374109, "GCACT":20830, "GCACC":59121, "GCACG":30157, "GCAGA":99658, "GCAGT":28939, "GCAGC":80243, "GCAGG":85553, "GCTAA":13837, "GCTAT":21529, "GCTAC":23077, "GCTAG":26045, "GCTTA":18193, "GCTTT":46539, "GCTTC":72500, "GCTTG":51288, "GCTCA":38122, "GCTCT":37879, "GCTCC":69741, "GCTCG":46228, "GCTGA":47806, "GCTGT":37374, "GCTGC":82360, "GCTGG":82008, "GCCAA":60834, "GCCAT":46083, "GCCAC":59514, "GCCAG":79797, "GCCTA":24372, "GCCTT":53270, "GCCTC":67057, "GCCTG":61611, "GCCCA":63056, "GCCCT":47402, "GCCCC":64002, "GCCCG":53822, "GCCGA":68324, "GCCGT":48397, "GCCGC":96854, "GCCGG":74182, "GCGAA":42556, "GCGAT":42569, "GCGAC":44326, "GCGAG":50241, "GCGTA":16459, "GCGTT":29406, "GCGTC":32060, "GCGTG":29357, "GCGCA":39121, "GCGCT":38388, "GCGCC":60924, "GCGCG":42883, "GCGGA":55933, "GCGGT":51235, "GCGGC":86566, "GCGGG":58457, "GGAAA":57351, "GGAAT":39874, "GGAAC":49608, "GGAAG":515476, "GGATA":35566, "GGATT":62770, "GGATC":42863, "GGATG":52303, "GGACA":34670, "GGACT":25147, "GGACC":34554, "GGACG":37115, "GGAGA":123841, "GGAGT":29090, "GGAGC":58763, "GGAGG":101561, "GGTAA":20428, "GGTAT":23284, "GGTAC":19312, "GGTAG":43261, "GGTTA":21109, "GGTTT":56013, "GGTTC":48796, "GGTTG":67344, "GGTCA":39261, "GGTCT":44924, "GGTCC":33592, "GGTCG":46544, "GGTGA":53637, "GGTGT":36810, "GGTGC":48722, "GGTGG":89384, "GGCAA":54352, "GGCAT":41142, "GGCAC":36488, "GGCAG":80884, "GGCTA":25955, "GGCTT":54400, "GGCTC":43660, "GGCTG":67510, "GGCCA":59824, "GGCCT":48706, "GGCCC":45239, "GGCCG":63836, "GGCGA":73576, "GGCGT":37610, "GGCGC":58239, "GGCGG":102451, "GGGAA":45905, "GGGAT":42359, "GGGAC":29732, "GGGAG":64187, "GGGTA":22311, "GGGTT":52740, "GGGTC":36473, "GGGTG":50303, "GGGCA":49716, "GGGCT":44813, "GGGCC":41248, "GGGCG":54957, "GGGGA":50759, "GGGGT":46612, "GGGGC":50717, "GGGGG":126058 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 907420, "total_bases": 55352620, "q20_bases": 53402717, "q30_bases": 50590615, "total_cycles": 61, "quality_curves": { "A":[39.4498,39.3176,39.0569,38.8182,38.9854,39.2167,39.2181,39.153,39.1385,39.1961,39.188,39.1561,39.1925,39.1889,39.1266,39.0884,39.2204,39.1219,39.2196,39.0957,38.404,39.1036,39.1428,39.1683,38.5507,39.0873,39.1234,38.3851,39.0081,38.0356,39.1023,39.1858,39.0472,38.8452,38.4982,38.9983,39.0074,38.9844,38.6095,38.979,38.7144,38.5287,38.491,38.2344,38.1281,38.4002,38.3282,37.0986,37.8107,36.8153,36.4351,36.1557,37.2183,36.9039,36.4834,35.0135,34.5124,33.9568,33.4885,34.2855,33.0853], 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"CTTGT":40405, "CTTGC":44577, "CTTGG":49828, "CTCAA":39448, "CTCAT":32601, "CTCAC":31176, "CTCAG":31549, "CTCTA":18312, "CTCTT":52474, "CTCTC":49396, "CTCTG":37382, "CTCCA":63816, "CTCCT":122639, "CTCCC":67677, "CTCCG":55265, "CTCGA":42707, "CTCGT":35703, "CTCGC":43751, "CTCGG":43851, "CTGAA":37093, "CTGAT":36357, "CTGAC":28159, "CTGAG":29619, "CTGTA":14791, "CTGTT":44137, "CTGTC":29152, "CTGTG":28314, "CTGCA":42410, "CTGCT":100178, "CTGCC":70511, "CTGCG":42380, "CTGGA":54630, "CTGGT":55328, "CTGGC":55007, "CTGGG":50777, "CCAAA":60018, "CCAAT":37988, "CCAAC":73961, "CCAAG":51662, "CCATA":25852, "CCATT":37431, "CCATC":62056, "CCATG":39770, "CCACA":58929, "CCACT":31236, "CCACC":129062, "CCACG":43168, "CCAGA":50545, "CCAGT":40267, "CCAGC":85952, "CCAGG":54554, "CCTAA":16102, "CCTAT":20897, "CCTAC":24924, "CCTAG":13415, "CCTTA":16120, "CCTTT":51808, "CCTTC":73107, "CCTTG":52926, "CCTCA":47630, "CCTCT":52216, "CCTCC":126129, "CCTCG":57271, "CCTGA":42276, "CCTGT":41980, "CCTGC":95785, "CCTGG":55611, "CCCAA":65170, "CCCAT":42360, "CCCAC":74655, "CCCAG":57977, "CCCTA":20216, "CCCTT":41754, "CCCTC":59727, "CCCTG":49284, "CCCCA":75523, "CCCCT":50935, "CCCCC":61432, "CCCCG":54789, "CCCGA":45261, "CCCGT":30661, "CCCGC":66111, "CCCGG":49900, "CCGAA":44010, "CCGAT":40996, "CCGAC":45815, "CCGAG":43518, "CCGTA":17946, "CCGTT":33812, "CCGTC":45819, "CCGTG":31359, "CCGCA":48322, "CCGCT":52002, "CCGCC":112586, "CCGCG":49277, "CCGGA":45753, "CCGGT":43445, "CCGGC":71609, "CCGGG":46198, "CGAAA":37768, "CGAAT":28422, "CGAAC":33491, "CGAAG":47166, "CGATA":23425, "CGATT":33838, "CGATC":44481, "CGATG":49704, "CGACA":34846, "CGACT":28041, "CGACC":51700, "CGACG":50107, "CGAGA":40494, "CGAGT":22003, "CGAGC":40371, "CGAGG":49349, "CGTAA":13780, "CGTAT":13466, "CGTAC":12898, "CGTAG":18387, "CGTTA":11088, "CGTTT":29818, "CGTTC":33861, "CGTTG":32695, "CGTCA":31695, "CGTCT":33300, "CGTCC":35969, "CGTCG":48245, "CGTGA":25825, "CGTGT":17475, "CGTGC":24891, "CGTGG":35168, "CGCAA":32048, "CGCAT":25215, "CGCAC":34985, "CGCAG":39496, "CGCTA":13844, "CGCTT":36531, "CGCTC":41923, "CGCTG":48640, "CGCCA":60783, "CGCCT":62861, "CGCCC":62291, "CGCCG":89141, "CGCGA":34654, "CGCGT":21346, "CGCGC":40235, "CGCGG":46681, "CGGAA":39147, "CGGAT":35959, "CGGAC":24517, "CGGAG":47333, "CGGTA":21932, "CGGTT":37882, "CGGTC":40455, "CGGTG":48699, "CGGCA":55426, "CGGCT":50792, "CGGCC":60864, "CGGCG":81867, "CGGGA":40689, "CGGGT":34369, "CGGGC":43416, "CGGGG":43699, "GAAAA":55430, "GAAAT":40672, "GAAAC":41615, "GAAAG":41951, "GAATA":24566, "GAATT":32814, "GAATC":35479, "GAATG":31107, "GAACA":37888, "GAACT":34313, "GAACC":44904, "GAACG":31312, "GAAGA":70889, "GAAGT":31529, "GAAGC":58551, "GAAGG":54628, "GATAA":25519, "GATAT":27516, "GATAC":20316, "GATAG":25030, "GATTA":19679, "GATTT":44739, "GATTC":38541, "GATTG":37624, "GATCA":41316, "GATCT":42698, "GATCC":41737, "GATCG":40623, "GATGA":59925, "GATGT":31443, "GATGC":39154, "GATGG":53566, "GACAA":36580, "GACAT":25572, "GACAC":23397, "GACAG":26945, "GACTA":13618, "GACTT":30097, "GACTC":22420, "GACTG":24852, "GACCA":46935, "GACCT":35649, "GACCC":41523, "GACCG":41460, "GACGA":51471, "GACGT":20935, "GACGC":32644, "GACGG":40707, "GAGAA":57717, "GAGAT":42414, "GAGAC":39131, "GAGAG":38491, "GAGTA":14587, "GAGTT":29605, "GAGTC":20363, "GAGTG":18693, "GAGCA":48683, "GAGCT":31649, "GAGCC":40527, "GAGCG":35297, "GAGGA":85309, "GAGGT":37004, "GAGGC":53016, "GAGGG":38459, "GTAAA":16437, "GTAAT":15391, "GTAAC":13079, "GTAAG":11546, "GTATA":8735, "GTATT":19813, "GTATC":18323, "GTATG":15993, "GTACA":13487, "GTACT":14607, "GTACC":18100, "GTACG":12843, "GTAGA":20898, "GTAGT":15691, "GTAGC":21237, "GTAGG":18079, "GTTAA":10572, "GTTAT":17403, "GTTAC":15296, "GTTAG":10549, "GTTTA":15872, "GTTTT":46676, "GTTTC":45477, "GTTTG":43069, "GTTCA":34465, "GTTCT":41707, "GTTCC":51464, "GTTCG":33360, "GTTGA":39146, "GTTGT":38956, "GTTGC":41289, "GTTGG":55450, "GTCAA":29791, "GTCAT":28970, "GTCAC":23822, "GTCAG":24356, "GTCTA":13230, "GTCTT":39031, "GTCTC":40298, "GTCTG":30298, "GTCCA":31750, "GTCCT":36698, "GTCCC":30517, "GTCCG":24082, "GTCGA":36842, "GTCGT":34189, "GTCGC":37928, "GTCGG":37815, "GTGAA":32179, "GTGAT":32227, "GTGAC":22062, "GTGAG":23561, "GTGTA":10037, "GTGTT":28066, "GTGTC":18410, "GTGTG":25193, "GTGCA":22788, "GTGCT":33942, "GTGCC":31879, "GTGCG":25749, "GTGGA":37495, "GTGGT":54185, "GTGGC":44237, "GTGGG":45682, "GCAAA":37339, "GCAAT":30341, "GCAAC":40323, "GCAAG":38963, "GCATA":17924, "GCATT":27781, "GCATC":38476, "GCATG":28602, "GCACA":30958, "GCACT":18944, "GCACC":53131, "GCACG":26711, "GCAGA":44315, "GCAGT":26654, "GCAGC":73340, "GCAGG":75929, "GCTAA":11845, "GCTAT":19701, "GCTAC":21232, "GCTAG":11227, "GCTTA":13820, "GCTTT":43534, "GCTTC":67129, "GCTTG":47302, "GCTCA":32377, "GCTCT":34520, "GCTCC":64779, "GCTCG":41679, "GCTGA":41181, "GCTGT":34185, "GCTGC":76241, "GCTGG":74436, "GCCAA":51957, "GCCAT":42310, "GCCAC":53815, "GCCAG":53863, "GCCTA":18007, "GCCTT":49590, "GCCTC":61979, "GCCTG":55974, "GCCCA":52039, "GCCCT":43163, "GCCCC":57895, "GCCCG":47719, "GCCGA":57733, "GCCGT":44228, "GCCGC":87028, "GCCGG":65987, "GCGAA":35353, "GCGAT":38660, "GCGAC":39671, "GCGAG":37340, "GCGTA":12255, "GCGTT":26705, "GCGTC":29169, "GCGTG":25611, "GCGCA":32047, "GCGCT":34467, "GCGCC":54686, "GCGCG":37797, "GCGGA":45497, "GCGGT":46557, "GCGGC":77195, "GCGGG":51602, "GGAAA":48131, "GGAAT":36948, "GGAAC":44931, "GGAAG":53155, "GGATA":28267, "GGATT":41421, "GGATC":38906, "GGATG":47426, "GGACA":28330, "GGACT":22993, "GGACC":31271, "GGACG":32808, "GGAGA":68883, "GGAGT":26601, "GGAGC":52819, "GGAGG":88048, "GGTAA":17439, "GGTAT":21577, "GGTAC":17642, "GGTAG":23270, "GGTTA":15827, "GGTTT":51921, "GGTTC":44929, "GGTTG":61949, "GGTCA":32960, "GGTCT":41313, "GGTCC":30758, "GGTCG":41685, "GGTGA":45890, "GGTGT":33380, "GGTGC":43971, "GGTGG":79732, "GGCAA":46106, "GGCAT":37670, "GGCAC":32772, "GGCAG":56175, "GGCTA":19642, "GGCTT":50169, "GGCTC":39891, "GGCTG":61138, "GGCCA":48753, "GGCCT":44494, "GGCCC":40549, "GGCCG":56150, "GGCGA":62118, "GGCGT":33903, "GGCGC":51667, "GGCGG":90220, "GGGAA":38363, "GGGAT":38504, "GGGAC":26612, "GGGAG":46976, "GGGTA":16415, "GGGTT":48212, "GGGTC":33006, "GGGTG":44624, "GGGCA":40602, "GGGCT":40838, "GGGCC":37020, "GGGCG":48292, "GGGGA":41381, "GGGGT":41052, "GGGGC":45121, "GGGGG":35787 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-22B_S5_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-22B_S5_R2_001.fastq.gz -o AM-AL-22B.trim.R1.fastq.gz -O AM-AL-22B.trim.R2.fastq.gz -m --merged_out AM-AL-22B.trim.merged.fastq.gz " }