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"CCGAT":53811, "CCGAC":58745, "CCGAG":65804, "CCGTA":28059, "CCGTT":46213, "CCGTC":63299, "CCGTG":40846, "CCGCA":67726, "CCGCT":69217, "CCGCC":147619, "CCGCG":63799, "CCGGA":64293, "CCGGT":62594, "CCGGC":95195, "CCGGG":63612, "CGAAA":50496, "CGAAT":35905, "CGAAC":44959, "CGAAG":72266, "CGATA":34871, "CGATT":43211, "CGATC":59115, "CGATG":64260, "CGACA":46832, "CGACT":35839, "CGACC":65543, "CGACG":60812, "CGAGA":80832, "CGAGT":27929, "CGAGC":52720, "CGAGG":63263, "CGTAA":17793, "CGTAT":17481, "CGTAC":17081, "CGTAG":36509, "CGTTA":17298, "CGTTT":38003, "CGTTC":48180, "CGTTG":42072, "CGTCA":43972, "CGTCT":325582, "CGTCC":85403, "CGTCG":62466, "CGTGA":32901, "CGTGT":21375, "CGTGC":32513, "CGTGG":46247, "CGCAA":42542, "CGCAT":31047, "CGCAC":40755, "CGCAG":64660, "CGCTA":22147, "CGCTT":49799, "CGCTC":56449, "CGCTG":61845, "CGCCA":85872, "CGCCT":85448, "CGCCC":82045, "CGCCG":113356, "CGCGA":46833, "CGCGT":27968, "CGCGC":53266, "CGCGG":59347, "CGGAA":591062, "CGGAT":47382, "CGGAC":31466, "CGGAG":74934, "CGGTA":34770, "CGGTT":51197, "CGGTC":54196, "CGGTG":64411, "CGGCA":74964, "CGGCT":69141, "CGGCC":80580, "CGGCG":102286, "CGGGA":56599, "CGGGT":48046, "CGGGC":59210, "CGGGG":59666, "GAAAA":70251, "GAAAT":48789, "GAAAC":49874, "GAAAG":62589, "GAATA":32697, "GAATT":40011, "GAATC":43956, "GAATG":38475, "GAACA":52600, "GAACT":226720, "GAACC":58477, "GAACG":40228, "GAAGA":626667, "GAAGT":40073, "GAAGC":70454, "GAAGG":69105, "GATAA":33268, "GATAT":35697, "GATAC":25619, "GATAG":49251, "GATTA":27231, "GATTT":54087, "GATTC":47982, "GATTG":49046, "GATCA":55944, "GATCT":62147, "GATCC":54591, "GATCG":652511, "GATGA":76632, "GATGT":40957, "GATGC":51081, "GATGG":70697, "GACAA":46164, "GACAT":32075, "GACAC":27777, "GACAG":46480, "GACTA":19034, "GACTT":38421, "GACTC":28115, "GACTG":30505, "GACCA":62823, "GACCT":45407, "GACCC":50865, "GACCG":52592, "GACGA":65795, "GACGT":26483, "GACGC":38755, "GACGG":50592, "GAGAA":73151, "GAGAT":184678, "GAGAC":46044, "GAGAG":56975, "GAGTA":20374, "GAGTT":37545, "GAGTC":25341, "GAGTG":23390, "GAGCA":494856, "GAGCT":40714, "GAGCC":52235, "GAGCG":44603, "GAGGA":111443, "GAGGT":48189, "GAGGC":65497, "GAGGG":50490, "GTAAA":19786, "GTAAT":19038, "GTAAC":16642, "GTAAG":18336, "GTATA":12446, "GTATT":24241, "GTATC":24485, "GTATG":19827, "GTACA":17976, "GTACT":17505, "GTACC":23860, "GTACG":16739, "GTAGA":79876, "GTAGT":19668, "GTAGC":25930, "GTAGG":23509, "GTTAA":14032, "GTTAT":22488, "GTTAC":20904, "GTTAG":27181, "GTTTA":22507, "GTTTT":58959, "GTTTC":59699, "GTTTG":56147, "GTTCA":45835, "GTTCT":55718, "GTTCC":75434, "GTTCG":45926, "GTTGA":50946, "GTTGT":51102, "GTTGC":53659, "GTTGG":74332, "GTCAA":39063, "GTCAT":36767, "GTCAC":96778, "GTCAG":43190, "GTCTA":20930, "GTCTT":52021, "GTCTC":52650, "GTCTG":299771, "GTCCA":45578, "GTCCT":80204, "GTCCC":43480, "GTCCG":33152, "GTCGA":49791, "GTCGT":45288, "GTCGC":49191, "GTCGG":50680, "GTGAA":41036, "GTGAT":41702, "GTGAC":27972, "GTGAG":36159, "GTGTA":14758, "GTGTT":36633, "GTGTC":24681, "GTGTG":31956, "GTGCA":31298, "GTGCT":45838, "GTGCC":42515, "GTGCG":33459, "GTGGA":53144, "GTGGT":73333, "GTGGC":57698, "GTGGG":62559, "GCAAA":49173, "GCAAT":37484, "GCAAC":48363, "GCAAG":59271, "GCATA":25122, "GCATT":33573, "GCATC":49915, "GCATG":34526, "GCACA":423930, "GCACT":24177, "GCACC":67793, "GCACG":33527, "GCAGA":116521, "GCAGT":31859, "GCAGC":81631, "GCAGG":94578, "GCTAA":15977, "GCTAT":25235, "GCTAC":27060, "GCTAG":30579, "GCTTA":21334, "GCTTT":55935, "GCTTC":90752, "GCTTG":61749, "GCTCA":44800, "GCTCT":44810, "GCTCC":87373, "GCTCG":57068, "GCTGA":54406, "GCTGT":44722, "GCTGC":91715, "GCTGG":100428, "GCCAA":69398, "GCCAT":54105, "GCCAC":65074, "GCCAG":92902, "GCCTA":28602, "GCCTT":66052, "GCCTC":81254, "GCCTG":75822, "GCCCA":72088, "GCCCT":56713, "GCCCC":75618, "GCCCG":65800, "GCCGA":77626, "GCCGT":56658, "GCCGC":110713, "GCCGG":87318, "GCGAA":48333, "GCGAT":49893, "GCGAC":48807, "GCGAG":56086, "GCGTA":18622, "GCGTT":34655, "GCGTC":37774, "GCGTG":32602, "GCGCA":45063, "GCGCT":46160, "GCGCC":70935, "GCGCG":49290, "GCGGA":62122, "GCGGT":60590, "GCGGC":95447, "GCGGG":70134, "GGAAA":64806, "GGAAT":46946, "GGAAC":57437, "GGAAG":596869, "GGATA":42884, "GGATT":52134, "GGATC":50196, "GGATG":63519, "GGACA":40370, "GGACT":29068, "GGACC":40133, "GGACG":41521, "GGAGA":140432, "GGAGT":32810, "GGAGC":65613, "GGAGG":113107, "GGTAA":24124, "GGTAT":27287, "GGTAC":23162, "GGTAG":50554, "GGTTA":26577, "GGTTT":67748, "GGTTC":60506, "GGTTG":84100, "GGTCA":47450, "GGTCT":54956, "GGTCC":42538, "GGTCG":56260, "GGTGA":62619, "GGTGT":45252, "GGTGC":60544, "GGTGG":108841, "GGCAA":61646, "GGCAT":47250, "GGCAC":41126, "GGCAG":90843, "GGCTA":31372, "GGCTT":66681, "GGCTC":53878, "GGCTG":80835, "GGCCA":68351, "GGCCT":59817, "GGCCC":53350, "GGCCG":73908, "GGCGA":83311, "GGCGT":43746, "GGCGC":65713, "GGCGG":116521, "GGGAA":52942, "GGGAT":51240, "GGGAC":34821, "GGGAG":73740, "GGGTA":27301, "GGGTT":66596, "GGGTC":45964, "GGGTG":62909, "GGGCA":58608, "GGGCT":54821, "GGGCC":48886, "GGGCG":64031, "GGGGA":59783, "GGGGT":60075, "GGGGC":58879, "GGGGG":131127 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1051300, "total_bases": 64129300, "q20_bases": 62143224, "q30_bases": 58973591, "total_cycles": 61, "quality_curves": { "A":[39.37,39.1509,39.1912,39.0122,39.1137,39.2184,39.1703,39.1558,39.1278,39.1862,39.1758,39.1846,39.2034,39.1788,39.1101,39.1177,39.209,39.1368,39.2187,39.1138,38.4941,39.1317,39.1556,39.1895,38.6929,39.1113,39.1432,38.5598,39.0304,38.1645,39.0991,39.1759,39.0473,38.9768,38.9547,39.0231,39.0162,39.0398,38.9404,38.9867,38.753,37.987,38.5346,38.2894,38.2326,38.5181,38.4543,37.4473,37.9471,37.0365,36.7508,36.4554,37.3994,37.164,36.8409,35.5517,35.29,34.727,34.3121,34.8134,34.1509], 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"CTTGT":51131, "CTTGC":55776, "CTTGG":61110, "CTCAA":44708, "CTCAT":39975, "CTCAC":34809, "CTCAG":38103, "CTCTA":21710, "CTCTT":62954, "CTCTC":57780, "CTCTG":46308, "CTCCA":78279, "CTCCT":154010, "CTCCC":86561, "CTCCG":71478, "CTCGA":52072, "CTCGT":45355, "CTCGC":54929, "CTCGG":53844, "CTGAA":43743, "CTGAT":43853, "CTGAC":33550, "CTGAG":34027, "CTGTA":17735, "CTGTT":57106, "CTGTC":37542, "CTGTG":35503, "CTGCA":50594, "CTGCT":120340, "CTGCC":86797, "CTGCG":52762, "CTGGA":64705, "CTGGT":71312, "CTGGC":67761, "CTGGG":62387, "CCAAA":67276, "CCAAT":45480, "CCAAC":82353, "CCAAG":59307, "CCATA":29797, "CCATT":45970, "CCATC":74313, "CCATG":48440, "CCACA":62623, "CCACT":37648, "CCACC":135908, "CCACG":49803, "CCAGA":58684, "CCAGT":51431, "CCAGC":100754, "CCAGG":65292, "CCTAA":18176, "CCTAT":25148, "CCTAC":28856, "CCTAG":15073, "CCTTA":20572, "CCTTT":64551, "CCTTC":95834, "CCTTG":68974, "CCTCA":55148, "CCTCT":64221, "CCTCC":156789, "CCTCG":72283, "CCTGA":51308, "CCTGT":57663, "CCTGC":121334, "CCTGG":68949, "CCCAA":73713, "CCCAT":50474, "CCCAC":82059, "CCCAG":69340, "CCCTA":22558, "CCCTT":52474, "CCCTC":72739, "CCCTG":62795, "CCCCA":85847, "CCCCT":62646, "CCCCC":70297, "CCCCG":67377, "CCCGA":54775, "CCCGT":40773, "CCCGC":83061, "CCCGG":62668, "CCGAA":52070, "CCGAT":49696, "CCGAC":54033, "CCGAG":50656, "CCGTA":21387, "CCGTT":43225, "CCGTC":58558, "CCGTG":37946, "CCGCA":57136, "CCGCT":64865, "CCGCC":135088, "CCGCG":58438, "CCGGA":54714, "CCGGT":58319, "CCGGC":87505, "CCGGG":58314, "CGAAA":43275, "CGAAT":33325, "CGAAC":40674, "CGAAG":54436, "CGATA":28023, "CGATT":40143, "CGATC":53253, "CGATG":59703, "CGACA":39068, "CGACT":33933, "CGACC":60226, "CGACG":56167, "CGAGA":44627, "CGAGT":26078, "CGAGC":48140, "CGAGG":57865, "CGTAA":15606, "CGTAT":16357, "CGTAC":15732, "CGTAG":21559, "CGTTA":13167, "CGTTT":35598, "CGTTC":44494, "CGTTG":39450, "CGTCA":38003, "CGTCT":43414, "CGTCC":48686, "CGTCG":57671, "CGTGA":29128, "CGTGT":19366, "CGTGC":30373, "CGTGG":42843, "CGCAA":37434, "CGCAT":29237, "CGCAC":37063, "CGCAG":45825, "CGCTA":16754, "CGCTT":46831, "CGCTC":52203, "CGCTG":57314, "CGCCA":71634, "CGCCT":79665, "CGCCC":75329, "CGCCG":104008, "CGCGA":40887, "CGCGT":25753, "CGCGC":48663, "CGCGG":54092, "CGGAA":45813, "CGGAT":43872, "CGGAC":28508, "CGGAG":54520, "CGGTA":27070, "CGGTT":48036, "CGGTC":50715, "CGGTG":58815, "CGGCA":62596, "CGGCT":64293, "CGGCC":74296, "CGGCG":92718, "CGGGA":48545, "CGGGT":44932, "CGGGC":54212, "CGGGG":54276, "GAAAA":62829, "GAAAT":46143, "GAAAC":46466, "GAAAG":47808, "GAATA":28256, "GAATT":37758, "GAATC":41185, "GAATG":36281, "GAACA":45278, "GAACT":41276, "GAACC":53724, "GAACG":37114, "GAAGA":79386, "GAAGT":37801, "GAAGC":65409, "GAAGG":63594, "GATAA":30180, "GATAT":33881, "GATAC":24101, "GATAG":29995, "GATTA":23178, "GATTT":51252, "GATTC":44970, "GATTG":46228, "GATCA":48874, "GATCT":49455, "GATCC":50793, "GATCG":48526, "GATGA":69322, "GATGT":38517, "GATGC":47884, "GATGG":65819, "GACAA":41260, "GACAT":29915, "GACAC":25459, "GACAG":30339, "GACTA":15141, "GACTT":36552, "GACTC":26032, "GACTG":28541, "GACCA":54389, "GACCT":42171, "GACCC":46820, "GACCG":48635, "GACGA":58763, "GACGT":24438, "GACGC":35585, "GACGG":47104, "GAGAA":64931, "GAGAT":47307, "GAGAC":42449, "GAGAG":42133, "GAGTA":16395, "GAGTT":35369, "GAGTC":23546, "GAGTG":21857, "GAGCA":55549, "GAGCT":37858, "GAGCC":48340, "GAGCG":40449, "GAGGA":95618, "GAGGT":44871, "GAGGC":60005, "GAGGG":45710, "GTAAA":18066, "GTAAT":18094, "GTAAC":15493, "GTAAG":13423, "GTATA":10631, "GTATT":23117, "GTATC":23014, "GTATG":18706, "GTACA":15550, "GTACT":16382, "GTACC":22434, "GTACG":15719, "GTAGA":23782, "GTAGT":18635, "GTAGC":24422, "GTAGG":22034, "GTTAA":12599, "GTTAT":21307, "GTTAC":19661, "GTTAG":13095, "GTTTA":18160, "GTTTT":55930, "GTTTC":56160, "GTTTG":53037, "GTTCA":41292, "GTTCT":52980, "GTTCC":70611, "GTTCG":42965, "GTTGA":45913, "GTTGT":48099, "GTTGC":50372, "GTTGG":69762, "GTCAA":34663, "GTCAT":34690, "GTCAC":29020, "GTCAG":30138, "GTCTA":15541, "GTCTT":49239, "GTCTC":51503, "GTCTG":37940, "GTCCA":39965, "GTCCT":49841, "GTCCC":41221, "GTCCG":30817, "GTCGA":43621, "GTCGT":42317, "GTCGC":45635, "GTCGG":46663, "GTGAA":35876, "GTGAT":38840, "GTGAC":25763, "GTGAG":27311, "GTGTA":11504, "GTGTT":34185, "GTGTC":22888, "GTGTG":28780, "GTGCA":26786, "GTGCT":42671, "GTGCC":39802, "GTGCG":30551, "GTGGA":46052, "GTGGT":67951, "GTGGC":53542, "GTGGG":56959, "GCAAA":42944, "GCAAT":35397, "GCAAC":45139, "GCAAG":45165, "GCATA":20325, "GCATT":31778, "GCATC":46800, "GCATG":32376, "GCACA":30820, "GCACT":22302, "GCACC":62245, "GCACG":30666, "GCAGA":50502, "GCAGT":30224, "GCAGC":75810, "GCAGG":85555, "GCTAA":13925, "GCTAT":23523, "GCTAC":25517, "GCTAG":12983, "GCTTA":16340, "GCTTT":52987, "GCTTC":85623, "GCTTG":57838, "GCTCA":39213, "GCTCT":41752, "GCTCC":82664, "GCTCG":52526, "GCTGA":47926, "GCTGT":41745, "GCTGC":85944, "GCTGG":93280, "GCCAA":60296, "GCCAT":51131, "GCCAC":60210, "GCCAG":63480, "GCCTA":21487, "GCCTT":63051, "GCCTC":76476, "GCCTG":70072, "GCCCA":60890, "GCCCT":52811, "GCCCC":69601, "GCCCG":59996, "GCCGA":67647, "GCCGT":53034, "GCCGC":101604, "GCCGG":79570, "GCGAA":41147, "GCGAT":45917, "GCGAC":44806, "GCGAG":42430, "GCGTA":14128, "GCGTT":32382, "GCGTC":35100, "GCGTG":29603, "GCGCA":37472, "GCGCT":42715, "GCGCC":65882, "GCGCG":44644, "GCGGA":51680, "GCGGT":56302, "GCGGC":87390, "GCGGG":63544, "GGAAA":55647, "GGAAT":44255, "GGAAC":53190, "GGAAG":61522, "GGATA":35101, "GGATT":49443, "GGATC":46596, "GGATG":58858, "GGACA":33613, "GGACT":27146, "GGACC":37051, "GGACG":37896, "GGAGA":77495, "GGAGT":30697, "GGAGC":60247, "GGAGG":100374, "GGTAA":21117, "GGTAT":25822, "GGTAC":21687, "GGTAG":28028, "GGTTA":20267, "GGTTT":64299, "GGTTC":57268, "GGTTG":78359, "GGTCA":40525, "GGTCT":51816, "GGTCC":39998, "GGTCG":51544, "GGTGA":54751, "GGTGT":41868, "GGTGC":55827, "GGTGG":99505, "GGCAA":53626, "GGCAT":44545, "GGCAC":37951, "GGCAG":62880, "GGCTA":24516, "GGCTT":62796, "GGCTC":50235, "GGCTG":74400, "GGCCA":56743, "GGCCT":56019, "GGCCC":48973, "GGCCG":66881, "GGCGA":71864, "GGCGT":40554, "GGCGC":60078, "GGCGG":105440, "GGGAA":45474, "GGGAT":47470, "GGGAC":32236, "GGGAG":54306, "GGGTA":20627, "GGGTT":62582, "GGGTC":42491, "GGGTG":56836, "GGGCA":48844, "GGGCT":50866, "GGGCC":44893, "GGGCG":58098, "GGGGA":50656, "GGGGT":54485, "GGGGC":53785, "GGGGG":44173 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21C_S3_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21C_S3_R2_001.fastq.gz -o AM-AL-21C.trim.R1.fastq.gz -O AM-AL-21C.trim.R2.fastq.gz -m --merged_out AM-AL-21C.trim.merged.fastq.gz " }