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"CGGAC":26265, "CGGAG":61668, "CGGTA":28338, "CGGTT":41960, "CGGTC":44745, "CGGTG":53530, "CGGCA":61740, "CGGCT":53840, "CGGCC":63104, "CGGCG":84291, "CGGGA":47265, "CGGGT":37956, "CGGGC":46900, "CGGGG":47744, "GAAAA":62809, "GAAAT":43146, "GAAAC":42386, "GAAAG":54228, "GAATA":28762, "GAATT":35621, "GAATC":38058, "GAATG":33609, "GAACA":43492, "GAACT":200577, "GAACC":47235, "GAACG":33937, "GAAGA":536164, "GAAGT":34858, "GAAGC":57703, "GAAGG":57592, "GATAA":29134, "GATAT":31259, "GATAC":22084, "GATAG":42700, "GATTA":24418, "GATTT":47740, "GATTC":41510, "GATTG":41999, "GATCA":47931, "GATCT":46914, "GATCC":45664, "GATCG":555336, "GATGA":65416, "GATGT":34848, "GATGC":43156, "GATGG":59855, "GACAA":39448, "GACAT":28455, "GACAC":23615, "GACAG":39008, "GACTA":16658, "GACTT":32522, "GACTC":23754, "GACTG":25920, "GACCA":51884, "GACCT":37821, "GACCC":41441, "GACCG":43597, "GACGA":57191, "GACGT":23408, "GACGC":33739, "GACGG":43104, "GAGAA":63125, "GAGAT":159646, "GAGAC":39353, "GAGAG":48082, "GAGTA":17856, "GAGTT":32584, "GAGTC":21682, "GAGTG":20379, "GAGCA":421312, "GAGCT":34098, "GAGCC":42304, "GAGCG":36386, "GAGGA":89902, "GAGGT":39944, "GAGGC":53115, "GAGGG":41043, "GTAAA":17761, "GTAAT":16494, "GTAAC":14056, "GTAAG":15903, "GTATA":11373, "GTATT":21469, "GTATC":21111, "GTATG":17387, "GTACA":15010, "GTACT":15171, "GTACC":18893, "GTACG":14073, "GTAGA":68677, "GTAGT":17272, "GTAGC":21374, "GTAGG":20026, "GTTAA":12621, "GTTAT":35175, "GTTAC":16261, "GTTAG":22832, "GTTTA":20054, "GTTTT":50940, "GTTTC":50061, "GTTTG":46006, "GTTCA":38163, "GTTCT":45998, "GTTCC":58026, "GTTCG":37554, "GTTGA":43293, "GTTGT":41716, "GTTGC":43437, "GTTGG":58426, "GTCAA":34201, "GTCAT":31607, "GTCAC":89148, "GTCAG":36321, "GTCTA":17927, "GTCTT":43471, "GTCTC":42649, "GTCTG":260775, "GTCCA":36803, "GTCCT":41446, "GTCCC":33157, "GTCCG":26948, "GTCGA":42210, "GTCGT":38116, "GTCGC":42161, "GTCGG":42400, "GTGAA":34271, "GTGAT":35462, "GTGAC":23876, "GTGAG":29793, "GTGTA":13067, "GTGTT":29850, 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"GCGCA":36273, "GCGCT":37045, "GCGCC":56060, "GCGCG":40137, "GCGGA":51019, "GCGGT":49440, "GCGGC":76240, "GCGGG":55296, "GGAAA":57258, "GGAAT":40362, "GGAAC":47363, "GGAAG":509257, "GGATA":37093, "GGATT":45079, "GGATC":42789, "GGATG":52794, "GGACA":33307, "GGACT":24818, "GGACC":32230, "GGACG":36424, "GGAGA":117499, "GGAGT":28262, "GGAGC":51861, "GGAGG":88473, "GGTAA":20587, "GGTAT":23710, "GGTAC":18712, "GGTAG":42390, "GGTTA":22470, "GGTTT":55852, "GGTTC":48453, "GGTTG":65739, "GGTCA":39762, "GGTCT":44815, "GGTCC":33119, "GGTCG":47970, "GGTGA":51548, "GGTGT":36102, "GGTGC":48029, "GGTGG":86977, "GGCAA":52154, "GGCAT":39743, "GGCAC":33552, "GGCAG":73495, "GGCTA":25885, "GGCTT":52921, "GGCTC":43045, "GGCTG":61892, "GGCCA":55670, "GGCCT":46932, "GGCCC":41484, "GGCCG":59716, "GGCGA":69261, "GGCGT":36369, "GGCGC":53002, "GGCGG":93212, "GGGAA":45301, "GGGAT":43142, "GGGAC":29043, "GGGAG":61333, "GGGTA":22651, "GGGTT":51753, "GGGTC":36325, "GGGTG":49582, "GGGCA":46786, "GGGCT":42279, "GGGCC":38546, "GGGCG":51637, "GGGGA":49652, "GGGGT":46855, "GGGGC":45822, "GGGGG":155762 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 878787, "total_bases": 53606007, "q20_bases": 51742639, "q30_bases": 48937280, "total_cycles": 61, "quality_curves": { "A":[39.47,39.194,39.0488,38.9982,39.1023,39.2425,39.127,39.1235,39.1743,39.1849,39.1737,39.1796,39.2137,39.1846,39.1099,39.0988,39.2014,39.1352,39.2133,39.102,38.3449,39.0847,39.1649,39.1922,38.4744,39.0819,39.1217,38.2679,38.9713,37.8097,39.0486,39.1656,39.0361,39.0699,38.7798,38.235,38.9905,39.0026,38.8469,38.621,38.6062,38.4494,38.4524,38.1937,38.1276,38.4197,38.3187,37.1195,37.7703,36.7724,36.4959,36.1731,37.1087,36.8307,36.3622,34.9097,34.5993,34.0462,33.639,34.0714,33.1741], 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"GC":[0.556329,0.534586,0.59147,0.589536,0.585973,0.533964,0.54196,0.523437,0.520327,0.531312,0.534986,0.532754,0.543317,0.544098,0.541116,0.546467,0.547379,0.541968,0.547223,0.546321,0.545968,0.547805,0.545758,0.542257,0.545312,0.545689,0.54149,0.544472,0.544468,0.54121,0.545049,0.544115,0.540578,0.543526,0.543361,0.53907,0.54173,0.539942,0.539496,0.541958,0.543352,0.538113,0.538137,0.542495,0.538001,0.540846,0.540109,0.538194,0.539959,0.541204,0.536967,0.538045,0.539837,0.536294,0.53877,0.538907,0.537134,0.538748,0.538309,0.536112,0.539102,0.541573,0.538519,0.539461,0.539348,0.53786,0.53696,0.543104,0.541487,0.53662,0.54197,0.539276,0.542506,0.542951,0.542693,0.541171,0.544634,0.543526,0.538641,0.549026,0.538178,0.545085,0.552998,0.551227,0.559684,0.561472,0.567768,0.56349,0.572166,0.545792,0.509292] }, "kmer_count": { "AAAAA":63548, "AAAAT":41105, "AAAAC":41947, "AAAAG":45868, "AAATA":26168, "AAATT":32374, "AAATC":39825, "AAATG":30997, "AAACA":32959, "AAACT":27900, "AAACC":51791, 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"CTTGT":40844, "CTTGC":44673, "CTTGG":49560, "CTCAA":37712, "CTCAT":33456, "CTCAC":27181, "CTCAG":31044, "CTCTA":18088, "CTCTT":52546, "CTCTC":46753, "CTCTG":37348, "CTCCA":61164, "CTCCT":112396, "CTCCC":65529, "CTCCG":53951, "CTCGA":42831, "CTCGT":36268, "CTCGC":43070, "CTCGG":44025, "CTGAA":37680, "CTGAT":37240, "CTGAC":28003, "CTGAG":28230, "CTGTA":14732, "CTGTT":44637, "CTGTC":29194, "CTGTG":27501, "CTGCA":39644, "CTGCT":85708, "CTGCC":64925, "CTGCG":40678, "CTGGA":53421, "CTGGT":55904, "CTGGC":52981, "CTGGG":48583, "CCAAA":53678, "CCAAT":37488, "CCAAC":62571, "CCAAG":48474, "CCATA":24951, "CCATT":38691, "CCATC":59999, "CCATG":39316, "CCACA":49088, "CCACT":29971, "CCACC":101652, "CCACG":39576, "CCAGA":47484, "CCAGT":40051, "CCAGC":76388, "CCAGG":51677, "CCTAA":14790, "CCTAT":21141, "CCTAC":23133, "CCTAG":12341, "CCTTA":17833, "CCTTT":52644, "CCTTC":74388, "CCTTG":54186, "CCTCA":43820, "CCTCT":50437, "CCTCC":113463, "CCTCG":56485, "CCTGA":42875, "CCTGT":43461, "CCTGC":86423, "CCTGG":54607, "CCCAA":56617, "CCCAT":40737, "CCCAC":61245, "CCCAG":52558, "CCCTA":18322, "CCCTT":41828, "CCCTC":54625, "CCCTG":48502, "CCCCA":63945, "CCCCT":47050, "CCCCC":51669, "CCCCG":50900, "CCCGA":43488, "CCCGT":31064, "CCCGC":61183, "CCCGG":48054, "CCGAA":41259, "CCGAT":42240, "CCGAC":43263, "CCGAG":41254, "CCGTA":17883, "CCGTT":34899, "CCGTC":46188, "CCGTG":29745, "CCGCA":44039, "CCGCT":49006, "CCGCC":101450, "CCGCG":44887, "CCGGA":44325, "CCGGT":45220, "CCGGC":67853, "CCGGG":45460, "CGAAA":35791, "CGAAT":27843, "CGAAC":32382, "CGAAG":44690, "CGATA":23913, "CGATT":34702, "CGATC":45624, "CGATG":50229, "CGACA":32760, "CGACT":26971, "CGACC":48960, "CGACG":46832, "CGAGA":38427, "CGAGT":22034, "CGAGC":38232, "CGAGG":47363, "CGTAA":13024, "CGTAT":14167, "CGTAC":13277, "CGTAG":17960, "CGTTA":11471, "CGTTT":29905, "CGTTC":35775, "CGTTG":32518, "CGTCA":31640, "CGTCT":34919, "CGTCC":37381, "CGTCG":47460, "CGTGA":24168, "CGTGT":16025, "CGTGC":23964, "CGTGG":34419, "CGCAA":30083, "CGCAT":24120, "CGCAC":28371, "CGCAG":36193, "CGCTA":13820, "CGCTT":37649, "CGCTC":41262, "CGCTG":44954, "CGCCA":56315, "CGCCT":60643, "CGCCC":56868, "CGCCG":82763, "CGCGA":33595, "CGCGT":20852, "CGCGC":38271, "CGCGG":42975, "CGGAA":38365, "CGGAT":37016, "CGGAC":23562, "CGGAG":44149, "CGGTA":21445, "CGGTT":38932, "CGGTC":41184, "CGGTG":48002, "CGGCA":50860, "CGGCT":49627, "CGGCC":57118, "CGGCG":75262, "CGGGA":40255, "CGGGT":34918, "CGGGC":42313, "CGGGG":42752, "GAAAA":55137, "GAAAT":39923, "GAAAC":39202, "GAAAG":41121, "GAATA":24667, "GAATT":33444, "GAATC":35198, "GAATG":31121, "GAACA":36557, "GAACT":34187, "GAACC":42972, "GAACG":30674, "GAAGA":66851, "GAAGT":32282, "GAAGC":52728, "GAAGG":52262, "GATAA":26306, "GATAT":29360, "GATAC":20585, "GATAG":25392, "GATTA":20358, "GATTT":44948, "GATTC":38538, "GATTG":38914, "GATCA":41325, "GATCT":43055, "GATCC":42148, "GATCG":41453, "GATGA":58612, "GATGT":32631, "GATGC":39896, "GATGG":55039, "GACAA":35095, "GACAT":26057, "GACAC":21392, "GACAG":25372, "GACTA":13118, "GACTT":30434, "GACTC":21798, "GACTG":23521, "GACCA":44318, "GACCT":34804, "GACCC":37570, "GACCG":39638, "GACGA":49944, "GACGT":21218, "GACGC":30345, "GACGG":39517, "GAGAA":55241, "GAGAT":41802, "GAGAC":36188, "GAGAG":35118, "GAGTA":14298, "GAGTT":29975, "GAGTC":19779, "GAGTG":18634, "GAGCA":43545, "GAGCT":31443, "GAGCC":38586, "GAGCG":32595, "GAGGA":77024, "GAGGT":36742, "GAGGC":47969, "GAGGG":36661, "GTAAA":16039, "GTAAT":15492, "GTAAC":12809, "GTAAG":11814, "GTATA":9432, "GTATT":20244, "GTATC":19604, "GTATG":16031, "GTACA":12830, "GTACT":13984, "GTACC":17498, "GTACG":12988, "GTAGA":20505, "GTAGT":15992, "GTAGC":19580, "GTAGG":18280, "GTTAA":11231, "GTTAT":18984, "GTTAC":15266, "GTTAG":10873, "GTTTA":15888, "GTTTT":47733, "GTTTC":46517, "GTTTG":43230, "GTTCA":33635, "GTTCT":43174, "GTTCC":53760, "GTTCG":34605, "GTTGA":38445, "GTTGT":39022, "GTTGC":40384, "GTTGG":54208, "GTCAA":29996, "GTCAT":29541, "GTCAC":23661, "GTCAG":24954, "GTCTA":13489, "GTCTT":40524, "GTCTC":41086, "GTCTG":30743, "GTCCA":31591, "GTCCT":38571, "GTCCC":30750, "GTCCG":24704, "GTCGA":36165, "GTCGT":35145, "GTCGC":38411, "GTCGG":38202, "GTGAA":29667, "GTGAT":32653, "GTGAC":21597, "GTGAG":22330, "GTGTA":10047, "GTGTT":27640, "GTGTC":18952, "GTGTG":23243, "GTGCA":22403, "GTGCT":33905, "GTGCC":30884, "GTGCG":24214, "GTGGA":37930, "GTGGT":53950, "GTGGC":43030, "GTGGG":44414, "GCAAA":36345, "GCAAT":30378, "GCAAC":35691, "GCAAG":36768, "GCATA":17343, "GCATT":27353, "GCATC":38049, "GCATG":26767, "GCACA":24557, "GCACT":18503, "GCACC":46817, "GCACG":24962, "GCAGA":41320, "GCAGT":24668, "GCAGC":57501, "GCAGG":65949, "GCTAA":12148, "GCTAT":19889, "GCTAC":20075, "GCTAG":10694, "GCTTA":13620, "GCTTT":43865, "GCTTC":65678, "GCTTG":46445, "GCTCA":32399, "GCTCT":34097, "GCTCC":60882, "GCTCG":41244, "GCTGA":39644, "GCTGT":33024, "GCTGC":63627, "GCTGG":71585, "GCCAA":48426, "GCCAT":42262, "GCCAC":46727, "GCCAG":50424, "GCCTA":17664, "GCCTT":50770, "GCCTC":58229, "GCCTG":52764, "GCCCA":47179, "GCCCT":40996, "GCCCC":51329, "GCCCG":45969, "GCCGA":54522, "GCCGT":43780, "GCCGC":77389, "GCCGG":63206, "GCGAA":33643, "GCGAT":38796, "GCGAC":37243, "GCGAG":35118, "GCGTA":12060, "GCGTT":26354, "GCGTC":28836, "GCGTG":23346, "GCGCA":29553, "GCGCT":33781, "GCGCC":50678, "GCGCG":35775, "GCGGA":42023, "GCGGT":45152, "GCGGC":68790, "GCGGG":49372, "GGAAA":48443, "GGAAT":37655, "GGAAC":43318, "GGAAG":51198, "GGATA":29951, "GGATT":42135, "GGATC":39443, "GGATG":48304, "GGACA":27397, "GGACT":22927, "GGACC":29503, "GGACG":32600, "GGAGA":64926, "GGAGT":25920, "GGAGC":47199, "GGAGG":77978, "GGTAA":17892, "GGTAT":22102, "GGTAC":17231, "GGTAG":22885, "GGTTA":17143, "GGTTT":52425, "GGTTC":45062, "GGTTG":60819, "GGTCA":33540, "GGTCT":41600, "GGTCC":30640, "GGTCG":43621, "GGTGA":44312, "GGTGT":33140, "GGTGC":43833, "GGTGG":78415, "GGCAA":44583, "GGCAT":36827, "GGCAC":30678, "GGCAG":50413, "GGCTA":19961, "GGCTT":49256, "GGCTC":39618, "GGCTG":56673, "GGCCA":45695, "GGCCT":43375, "GGCCC":37415, "GGCCG":53384, "GGCGA":59147, "GGCGT":32944, "GGCGC":47474, "GGCGG":83051, "GGGAA":38312, "GGGAT":39675, "GGGAC":26325, "GGGAG":44977, "GGGTA":17025, "GGGTT":48176, "GGGTC":33364, "GGGTG":44159, "GGGCA":38664, "GGGCT":38750, "GGGCC":34944, "GGGCG":46111, "GGGGA":41346, "GGGGT":42031, "GGGGC":41257, "GGGGG":34844 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21B_S2_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21B_S2_R2_001.fastq.gz -o AM-AL-21B.trim.R1.fastq.gz -O AM-AL-21B.trim.R2.fastq.gz -m --merged_out AM-AL-21B.trim.merged.fastq.gz " }