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"CTCGC":55590, "CTCGG":57015, "CTGAA":294180, "CTGAT":47263, "CTGAC":36517, "CTGAG":44191, "CTGTA":22523, "CTGTT":55350, "CTGTC":37698, "CTGTG":35316, "CTGCA":55257, "CTGCT":108806, "CTGCC":82588, "CTGCG":52661, "CTGGA":73415, "CTGGT":70999, "CTGGC":68652, "CTGGG":76976, "CCAAA":71809, "CCAAT":47103, "CCAAC":79368, "CCAAG":75509, "CCATA":36634, "CCATT":47624, "CCATC":76174, "CCATG":50814, "CCACA":67886, "CCACT":39086, "CCACC":130584, "CCACG":53162, "CCAGA":130474, "CCAGT":171344, "CCAGC":98837, "CCAGG":67961, "CCTAA":20070, "CCTAT":26124, "CCTAC":30185, "CCTAG":33385, "CCTTA":27468, "CCTTT":65774, "CCTTC":94787, "CCTTG":68004, "CCTCA":59370, "CCTCT":63545, "CCTCC":146028, "CCTCG":72602, "CCTGA":57901, "CCTGT":54574, "CCTGC":111483, "CCTGG":70460, "CCCAA":75700, "CCCAT":51432, "CCCAC":78951, "CCCAG":87428, "CCCTA":27629, "CCCTT":52966, "CCCTC":71335, "CCCTG":61285, "CCCCA":87986, "CCCCT":60755, "CCCCC":70250, "CCCCG":66009, "CCCGA":61128, "CCCGT":41259, "CCCGC":79065, "CCCGG":62815, 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"CGGAC":32467, "CGGAG":75096, "CGGTA":34310, "CGGTT":49433, "CGGTC":53597, "CGGTG":64974, "CGGCA":76412, "CGGCT":64224, "CGGCC":76240, "CGGCG":105205, "CGGGA":57242, "CGGGT":45472, "CGGGC":57524, "CGGGG":57499, "GAAAA":74223, "GAAAT":51672, "GAAAC":50241, "GAAAG":65541, "GAATA":34436, "GAATT":42382, "GAATC":44790, "GAATG":40453, "GAACA":52710, "GAACT":250122, "GAACC":55639, "GAACG":41262, "GAAGA":659512, "GAAGT":41595, "GAAGC":70837, "GAAGG":70188, "GATAA":34583, "GATAT":36988, "GATAC":26976, "GATAG":51276, "GATTA":28465, "GATTT":56365, "GATTC":49514, "GATTG":49277, "GATCA":57867, "GATCT":56168, "GATCC":55324, "GATCG":711237, "GATGA":78162, "GATGT":41889, "GATGC":51470, "GATGG":71757, "GACAA":47453, "GACAT":34098, "GACAC":28834, "GACAG":47258, "GACTA":20254, "GACTT":38687, "GACTC":27991, "GACTG":31959, "GACCA":63424, "GACCT":45614, "GACCC":48953, "GACCG":53549, "GACGA":69106, "GACGT":28628, "GACGC":41208, "GACGG":54044, "GAGAA":75934, "GAGAT":195571, "GAGAC":47190, "GAGAG":57712, "GAGTA":21277, "GAGTT":39023, "GAGTC":25848, "GAGTG":24488, "GAGCA":522603, "GAGCT":40716, "GAGCC":50585, "GAGCG":45702, "GAGGA":108525, "GAGGT":47229, "GAGGC":64883, "GAGGG":49357, "GTAAA":20809, "GTAAT":19743, "GTAAC":16418, "GTAAG":19240, "GTATA":13096, "GTATT":25264, "GTATC":24937, "GTATG":20020, "GTACA":18096, "GTACT":18323, "GTACC":22368, "GTACG":16837, "GTAGA":83357, "GTAGT":20472, "GTAGC":25637, "GTAGG":23882, "GTTAA":14808, "GTTAT":23308, "GTTAC":18835, "GTTAG":27610, "GTTTA":23299, "GTTTT":60049, "GTTTC":58713, "GTTTG":53957, "GTTCA":46157, "GTTCT":53949, "GTTCC":68065, "GTTCG":44348, "GTTGA":51301, "GTTGT":48674, "GTTGC":51427, "GTTGG":69813, "GTCAA":40801, "GTCAT":56976, "GTCAC":110903, "GTCAG":44259, "GTCTA":21477, "GTCTT":51668, "GTCTC":49611, "GTCTG":323889, "GTCCA":43394, "GTCCT":49296, "GTCCC":39506, "GTCCG":32517, "GTCGA":51851, "GTCGT":45707, "GTCGC":51855, "GTCGG":51846, "GTGAA":41490, "GTGAT":42197, "GTGAC":29354, "GTGAG":36005, "GTGTA":15928, "GTGTT":34474, "GTGTC":24694, "GTGTG":29626, "GTGCA":31238, "GTGCT":43059, "GTGCC":40272, "GTGCG":32378, "GTGGA":53213, "GTGGT":70955, "GTGGC":56544, "GTGGG":58300, "GCAAA":51073, "GCAAT":39017, "GCAAC":47733, "GCAAG":59776, "GCATA":26041, "GCATT":34696, "GCATC":50365, "GCATG":35319, "GCACA":452760, "GCACT":24616, "GCACC":60557, "GCACG":34275, "GCAGA":116635, "GCAGT":32454, "GCAGC":77206, "GCAGG":89748, "GCTAA":15830, "GCTAT":25059, "GCTAC":25595, "GCTAG":30316, "GCTTA":21404, "GCTTT":54709, "GCTTC":83772, "GCTTG":59430, "GCTCA":44257, "GCTCT":43055, "GCTCC":77323, "GCTCG":54903, "GCTGA":54508, "GCTGT":42381, "GCTGC":81543, "GCTGG":92162, "GCCAA":67534, "GCCAT":54002, "GCCAC":61824, "GCCAG":89604, "GCCTA":27889, "GCCTT":63319, "GCCTC":73365, "GCCTG":68782, "GCCCA":67763, "GCCCT":52472, "GCCCC":66730, "GCCCG":61728, "GCCGA":78380, "GCCGT":57148, "GCCGC":102776, "GCCGG":84360, "GCGAA":49440, "GCGAT":51586, "GCGAC":52176, "GCGAG":58582, "GCGTA":19391, "GCGTT":34658, "GCGTC":38513, "GCGTG":32665, "GCGCA":44330, "GCGCT":45033, "GCGCC":67696, "GCGCG":48980, "GCGGA":63103, "GCGGT":58916, "GCGGC":93969, "GCGGG":67184, "GGAAA":67381, "GGAAT":47854, "GGAAC":56912, "GGAAG":625905, "GGATA":43553, "GGATT":53171, "GGATC":51655, "GGATG":62301, "GGACA":40249, "GGACT":29706, "GGACC":39259, "GGACG":44185, "GGAGA":142567, "GGAGT":34197, "GGAGC":63977, "GGAGG":107450, "GGTAA":24611, "GGTAT":27784, "GGTAC":22641, "GGTAG":51023, "GGTTA":26653, "GGTTT":65714, "GGTTC":56975, "GGTTG":77916, "GGTCA":47961, "GGTCT":53042, "GGTCC":39575, "GGTCG":59266, "GGTGA":62000, "GGTGT":42105, "GGTGC":56839, "GGTGG":103803, "GGCAA":64152, "GGCAT":47910, "GGCAC":40721, "GGCAG":89731, "GGCTA":30632, "GGCTT":63038, "GGCTC":51454, "GGCTG":74747, "GGCCA":67322, "GGCCT":55810, "GGCCC":50031, "GGCCG":72131, "GGCGA":87392, "GGCGT":44278, "GGCGC":64933, "GGCGG":113600, "GGGAA":54152, "GGGAT":50434, "GGGAC":34670, "GGGAG":74148, "GGGTA":27422, "GGGTT":61065, "GGGTC":43713, "GGGTG":57609, "GGGCA":57322, "GGGCT":50889, "GGGCC":46394, "GGGCG":63349, "GGGGA":58610, "GGGGT":55116, "GGGGC":55956, "GGGGG":189821 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1056620, "total_bases": 64453820, "q20_bases": 62077197, "q30_bases": 58632609, "total_cycles": 61, "quality_curves": { "A":[39.405,39.134,39.1357,38.9881,38.9545,39.0548,39.0099,39.06,39.1097,39.1175,39.1214,39.1052,39.1291,39.1169,39.0777,39.0582,39.1643,39.0855,39.171,39.0545,38.2843,39.0665,39.1202,39.1266,38.4126,39.0279,39.0784,38.1718,38.8998,37.7217,39.0116,39.1154,38.9854,39.0227,38.9106,38.9492,38.9461,38.9537,38.8501,38.7389,38.6163,38.4077,38.3986,38.1012,38.0349,38.3345,38.2271,36.8075,37.6838,36.6977,36.441,36.1278,37.0752,36.7489,36.3817,34.8895,34.6437,34.2452,33.8829,34.3087,33.5265], 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"CTTGA":53888, "CTTGT":47727, "CTTGC":53084, "CTTGG":59419, "CTCAA":44543, "CTCAT":39286, "CTCAC":32738, "CTCAG":36585, "CTCTA":21152, "CTCTT":61673, "CTCTC":55173, "CTCTG":42991, "CTCCA":72498, "CTCCT":134078, "CTCCC":78036, "CTCCG":63558, "CTCGA":51392, "CTCGT":43345, "CTCGC":51315, "CTCGG":52324, "CTGAA":44922, "CTGAT":44046, "CTGAC":33398, "CTGAG":33162, "CTGTA":17632, "CTGTT":51551, "CTGTC":34671, "CTGTG":32428, "CTGCA":47639, "CTGCT":101649, "CTGCC":76527, "CTGCG":48147, "CTGGA":63235, "CTGGT":66174, "CTGGC":63090, "CTGGG":58297, "CCAAA":62731, "CCAAT":44016, "CCAAC":72980, "CCAAG":57265, "CCATA":29795, "CCATT":44904, "CCATC":70275, "CCATG":47044, "CCACA":57989, "CCACT":35996, "CCACC":119192, "CCACG":47830, "CCAGA":57131, "CCAGT":47838, "CCAGC":89954, "CCAGG":61283, "CCTAA":17326, "CCTAT":24397, "CCTAC":27266, "CCTAG":14543, "CCTTA":20636, "CCTTT":62027, "CCTTC":88372, "CCTTG":63865, "CCTCA":51460, "CCTCT":59298, "CCTCC":134688, "CCTCG":67114, "CCTGA":50733, "CCTGT":50645, "CCTGC":103384, "CCTGG":64732, "CCCAA":65979, "CCCAT":47627, "CCCAC":71418, "CCCAG":62684, "CCCTA":20972, "CCCTT":49404, "CCCTC":65295, "CCCTG":56623, "CCCCA":74124, "CCCCT":55926, "CCCCC":59937, "CCCCG":59956, "CCCGA":52311, "CCCGT":37321, "CCCGC":71812, "CCCGG":57205, "CCGAA":50301, "CCGAT":49495, "CCGAC":52705, "CCGAG":50338, "CCGTA":21421, "CCGTT":41173, "CCGTC":55244, "CCGTG":36768, "CCGCA":52347, "CCGCT":58003, "CCGCC":119823, "CCGCG":54999, "CCGGA":53230, "CCGGT":54294, "CCGGC":80522, "CCGGG":54778, "CGAAA":43460, "CGAAT":33400, "CGAAC":39739, "CGAAG":55165, "CGATA":28908, "CGATT":40511, "CGATC":54694, "CGATG":60302, "CGACA":39918, "CGACT":32669, "CGACC":59684, "CGACG":58547, "CGAGA":47074, "CGAGT":26245, "CGAGC":47258, "CGAGG":57701, "CGTAA":15847, "CGTAT":16598, "CGTAC":15699, "CGTAG":21757, "CGTTA":13617, "CGTTT":35327, "CGTTC":42576, "CGTTG":38973, "CGTCA":38421, "CGTCT":40782, "CGTCC":44525, "CGTCG":58233, "CGTGA":29633, "CGTGT":19370, "CGTGC":28988, "CGTGG":42297, "CGCAA":36040, "CGCAT":29069, "CGCAC":34493, "CGCAG":44334, "CGCTA":16471, "CGCTT":44404, "CGCTC":49049, "CGCTG":53526, "CGCCA":67614, "CGCCT":71202, "CGCCC":68187, "CGCCG":100214, "CGCGA":41132, "CGCGT":25562, "CGCGC":46555, "CGCGG":52459, "CGGAA":45850, "CGGAT":44171, "CGGAC":28910, "CGGAG":53334, "CGGTA":25850, "CGGTT":46054, "CGGTC":49262, "CGGTG":58420, "CGGCA":62315, "CGGCT":59327, "CGGCC":68878, "CGGCG":93770, "CGGGA":48714, "CGGGT":41709, "CGGGC":51653, "CGGGG":51382, "GAAAA":65321, "GAAAT":48044, "GAAAC":46413, "GAAAG":49129, "GAATA":29279, "GAATT":39548, "GAATC":41726, "GAATG":37671, "GAACA":44290, "GAACT":40979, "GAACC":50783, "GAACG":37427, "GAAGA":81580, "GAAGT":38405, "GAAGC":64876, "GAAGG":64017, "GATAA":31166, "GATAT":34763, "GATAC":25227, "GATAG":30244, "GATTA":23823, "GATTT":53031, "GATTC":46163, "GATTG":45822, "GATCA":49656, "GATCT":51920, "GATCC":50680, "GATCG":49960, "GATGA":69903, "GATGT":39077, "GATGC":47731, "GATGG":65512, "GACAA":42080, "GACAT":31294, "GACAC":26177, "GACAG":30593, "GACTA":15838, "GACTT":36222, "GACTC":25682, "GACTG":29109, "GACCA":54112, "GACCT":41796, "GACCC":44450, "GACCG":48610, "GACGA":60156, "GACGT":26161, "GACGC":37207, "GACGG":49332, "GAGAA":66533, "GAGAT":50012, "GAGAC":43343, "GAGAG":42231, "GAGTA":17002, "GAGTT":35897, "GAGTC":23855, "GAGTG":22432, "GAGCA":54338, "GAGCT":37417, "GAGCC":46283, "GAGCG":40982, "GAGGA":92807, "GAGGT":43460, "GAGGC":58845, "GAGGG":44226, "GTAAA":18776, "GTAAT":18580, "GTAAC":15164, "GTAAG":14015, "GTATA":11052, "GTATT":23685, "GTATC":23175, "GTATG":18635, "GTACA":15586, "GTACT":16941, "GTACC":20754, "GTACG":15487, "GTAGA":24622, "GTAGT":19211, "GTAGC":23617, "GTAGG":21828, "GTTAA":13250, "GTTAT":21993, "GTTAC":17862, "GTTAG":13000, "GTTTA":18511, "GTTTT":56510, "GTTTC":54540, "GTTTG":50453, "GTTCA":40814, "GTTCT":50847, "GTTCC":63116, "GTTCG":40932, "GTTGA":45741, "GTTGT":45343, "GTTGC":47592, "GTTGG":64586, "GTCAA":35718, "GTCAT":35690, "GTCAC":27842, "GTCAG":30448, "GTCTA":15900, "GTCTT":48371, "GTCTC":47715, "GTCTG":36350, "GTCCA":37271, "GTCCT":46046, "GTCCC":36907, "GTCCG":29592, "GTCGA":44119, "GTCGT":42047, "GTCGC":47407, "GTCGG":46755, "GTGAA":35975, "GTGAT":38973, "GTGAC":26631, "GTGAG":26874, "GTGTA":12092, "GTGTT":32075, "GTGTC":22579, "GTGTG":26679, "GTGCA":26569, "GTGCT":39605, "GTGCC":36875, "GTGCG":29237, "GTGGA":45279, "GTGGT":64872, "GTGGC":51630, "GTGGG":52574, "GCAAA":44066, "GCAAT":36496, "GCAAC":43735, "GCAAG":44518, "GCATA":20692, "GCATT":32429, "GCATC":46245, "GCATG":32533, "GCACA":30404, "GCACT":22404, "GCACC":54582, "GCACG":30675, "GCAGA":51290, "GCAGT":30269, "GCAGC":70776, "GCAGG":80514, "GCTAA":13677, "GCTAT":23232, "GCTAC":23677, "GCTAG":13203, "GCTTA":16229, "GCTTT":51542, "GCTTC":78097, "GCTTG":55320, "GCTCA":38433, "GCTCT":39742, "GCTCC":72331, "GCTCG":50108, "GCTGA":47508, "GCTGT":39161, "GCTGC":75400, "GCTGG":84832, "GCCAA":58339, "GCCAT":50283, "GCCAC":56213, "GCCAG":60455, "GCCTA":20698, "GCCTT":59513, "GCCTC":68004, "GCCTG":62756, "GCCCA":56655, "GCCCT":48460, "GCCCC":60805, "GCCCG":55463, "GCCGA":66667, "GCCGT":52850, "GCCGC":92931, "GCCGG":75831, "GCGAA":41784, "GCGAT":47077, "GCGAC":47079, "GCGAG":43591, "GCGTA":14580, "GCGTT":31857, "GCGTC":35193, "GCGTG":29396, "GCGCA":36308, "GCGCT":40778, "GCGCC":61388, "GCGCG":43467, "GCGGA":51466, "GCGGT":53913, "GCGGC":84468, "GCGGG":59976, "GGAAA":57225, "GGAAT":44726, "GGAAC":51589, "GGAAG":61995, "GGATA":35009, "GGATT":49996, "GGATC":47405, "GGATG":56920, "GGACA":33319, "GGACT":27456, "GGACC":35671, "GGACG":39636, "GGAGA":78175, "GGAGT":31332, "GGAGC":58326, "GGAGG":94598, "GGTAA":21392, "GGTAT":25893, "GGTAC":20785, "GGTAG":27320, "GGTTA":20130, "GGTTT":61745, "GGTTC":53376, "GGTTG":71773, "GGTCA":40215, "GGTCT":49484, "GGTCC":36672, "GGTCG":53424, "GGTGA":53739, "GGTGT":38559, "GGTGC":51868, "GGTGG":93504, "GGCAA":54843, "GGCAT":44100, "GGCAC":36817, "GGCAG":61898, "GGCTA":23678, "GGCTT":58795, "GGCTC":47651, "GGCTG":68253, "GGCCA":55096, "GGCCT":51343, "GGCCC":45327, "GGCCG":64280, "GGCGA":74391, "GGCGT":40456, "GGCGC":58206, "GGCGG":101048, "GGGAA":45677, "GGGAT":46326, "GGGAC":31437, "GGGAG":54653, "GGGTA":20500, "GGGTT":56397, "GGGTC":39907, "GGGTG":51655, "GGGCA":47401, "GGGCT":46908, "GGGCC":41918, "GGGCG":56389, "GGGGA":48981, "GGGGT":49378, "GGGGC":50471, "GGGGG":41142 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21A_S1_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/b2/AM-AL-21A_S1_R2_001.fastq.gz -o AM-AL-21A.trim.R1.fastq.gz -O AM-AL-21A.trim.R2.fastq.gz -m --merged_out AM-AL-21A.trim.merged.fastq.gz " }