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"GGGCT":55733, "GGGCC":49407, "GGGCG":70881, "GGGGA":63669, "GGGGT":64129, "GGGGC":67553, "GGGGG":79344 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1058606, "total_bases": 64574966, "q20_bases": 63136921, "q30_bases": 60501388, "total_cycles": 61, "quality_curves": { "A":[39.2528,39.2052,39.0769,38.8693,39.034,38.8508,38.9719,38.765,39.0621,39.0807,39.0246,38.9975,39.0886,39.098,39.0846,39.0775,39.07,39.0392,39.1043,39.0748,38.9048,39.0841,39.0803,39.1039,38.8978,39.0828,39.089,38.8867,39.0362,38.9115,39.0283,39.0759,39.0016,39.0475,38.9961,39.0276,39.0491,39.0119,38.986,38.8911,38.8733,38.8805,38.8499,38.7831,38.6773,38.5365,38.3128,38.19,38.2719,37.9973,37.7919,37.584,37.4366,37.0388,36.8614,36.5454,36.2946,36.0113,35.8022,35.3353,35.1388], 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"CCTGG":72531, "CCCAA":86673, "CCCAT":58521, "CCCAC":98163, "CCCAG":78445, "CCCTA":26807, "CCCTT":52678, "CCCTC":67332, "CCCTG":64316, "CCCCA":103179, "CCCCT":61450, "CCCCC":77898, "CCCCG":73162, "CCCGA":59801, "CCCGT":44386, "CCCGC":88938, "CCCGG":61525, "CCGAA":57931, "CCGAT":55264, "CCGAC":55169, "CCGAG":51470, "CCGTA":24130, "CCGTT":45945, "CCGTC":60004, "CCGTG":40195, "CCGCA":61792, "CCGCT":61822, "CCGCC":141689, "CCGCG":57733, "CCGGA":57534, "CCGGT":56763, "CCGGC":85194, "CCGGG":56750, "CGAAA":46329, "CGAAT":34498, "CGAAC":46097, "CGAAG":58256, "CGATA":31138, "CGATT":41555, "CGATC":53033, "CGATG":62946, "CGACA":41257, "CGACT":31603, "CGACC":62760, "CGACG":51695, "CGAGA":45553, "CGAGT":26151, "CGAGC":44308, "CGAGG":57380, "CGTAA":17270, "CGTAT":17688, "CGTAC":16358, "CGTAG":23170, "CGTTA":14609, "CGTTT":35721, "CGTTC":45986, "CGTTG":41561, "CGTCA":38967, "CGTCT":43973, "CGTCC":51353, "CGTCG":50472, "CGTGA":29805, "CGTGT":20636, "CGTGC":30158, "CGTGG":48783, "CGCAA":42696, "CGCAT":31851, "CGCAC":37252, "CGCAG":48129, "CGCTA":18022, "CGCTT":46299, "CGCTC":47998, "CGCTG":54830, "CGCCA":80527, "CGCCT":83288, "CGCCC":81835, "CGCCG":98502, "CGCGA":39299, "CGCGT":26136, "CGCGC":47312, "CGCGG":53381, "CGGAA":51690, "CGGAT":48916, "CGGAC":31276, "CGGAG":56578, "CGGTA":28528, "CGGTT":52194, "CGGTC":49811, "CGGTG":58644, "CGGCA":66867, "CGGCT":61510, "CGGCC":71367, "CGGCG":91217, "CGGGA":52597, "CGGGT":46206, "CGGGC":54189, "CGGGG":60236, "GAAAA":65802, "GAAAT":49597, "GAAAC":53591, "GAAAG":52134, "GAATA":31597, "GAATT":38045, "GAATC":42816, "GAATG":42584, "GAACA":56928, "GAACT":51991, "GAACC":62220, "GAACG":40836, "GAAGA":83014, "GAAGT":40248, "GAAGC":72978, "GAAGG":70519, "GATAA":35820, "GATAT":36336, "GATAC":28114, "GATAG":33920, "GATTA":26172, "GATTT":51470, "GATTC":46499, "GATTG":53358, "GATCA":48114, "GATCT":45253, "GATCC":50984, "GATCG":47752, "GATGA":76307, "GATGT":43555, "GATGC":49369, "GATGG":74101, "GACAA":47552, "GACAT":34639, "GACAC":30463, "GACAG":33816, "GACTA":17349, "GACTT":37356, "GACTC":24371, "GACTG":31694, "GACCA":58104, "GACCT":44772, "GACCC":51255, "GACCG":50375, "GACGA":61749, "GACGT":23982, "GACGC":38498, "GACGG":51315, "GAGAA":68654, "GAGAT":48691, "GAGAC":47009, "GAGAG":41425, "GAGTA":18394, "GAGTT":37462, "GAGTC":23872, "GAGTG":24647, "GAGCA":63430, "GAGCT":34826, "GAGCC":48093, "GAGCG":38773, "GAGGA":99388, "GAGGT":45873, "GAGGC":66351, "GAGGG":48071, "GTAAA":20828, "GTAAT":19857, "GTAAC":16389, "GTAAG":16421, "GTATA":12758, "GTATT":26678, "GTATC":26090, "GTATG":22388, "GTACA":16262, "GTACT":18998, "GTACC":24935, "GTACG":15883, "GTAGA":25194, "GTAGT":21771, "GTAGC":25066, "GTAGG":24106, "GTTAA":13683, "GTTAT":24758, "GTTAC":18470, "GTTAG":15724, "GTTTA":20402, "GTTTT":56100, "GTTTC":58984, "GTTTG":56202, "GTTCA":45421, "GTTCT":53394, "GTTCC":82262, "GTTCG":44433, "GTTGA":50793, "GTTGT":51760, "GTTGC":55555, "GTTGG":76993, "GTCAA":38436, "GTCAT":37531, "GTCAC":29347, "GTCAG":31855, "GTCTA":17687, "GTCTT":48140, "GTCTC":50151, "GTCTG":41746, "GTCCA":45445, "GTCCT":50909, "GTCCC":41929, "GTCCG":32108, "GTCGA":39774, "GTCGT":39875, "GTCGC":44610, "GTCGG":45653, "GTGAA":35975, "GTGAT":39995, "GTGAC":27328, "GTGAG":28149, "GTGTA":12856, "GTGTT":36860, "GTGTC":25526, "GTGTG":29773, "GTGCA":29826, "GTGCT":43374, "GTGCC":41198, "GTGCG":30990, "GTGGA":51269, "GTGGT":71306, "GTGGC":57579, "GTGGG":66378, "GCAAA":48759, "GCAAT":41773, "GCAAC":54371, "GCAAG":50587, "GCATA":23720, "GCATT":36924, "GCATC":49398, "GCATG":34879, "GCACA":33975, "GCACT":24141, "GCACC":67267, "GCACG":31981, "GCAGA":58497, "GCAGT":32775, "GCAGC":67350, "GCAGG":100840, "GCTAA":14696, "GCTAT":24495, "GCTAC":25388, "GCTAG":14103, "GCTTA":16841, "GCTTT":52158, "GCTTC":84070, "GCTTG":59990, "GCTCA":37437, "GCTCT":38923, "GCTCC":81931, "GCTCG":45199, "GCTGA":49114, "GCTGT":40525, "GCTGC":70666, "GCTGG":101018, "GCCAA":69980, "GCCAT":57436, "GCCAC":66941, "GCCAG":70741, "GCCTA":24140, "GCCTT":64273, "GCCTC":75251, "GCCTG":74525, "GCCCA":70231, "GCCCT":54529, "GCCCC":78984, "GCCCG":61400, "GCCGA":69098, "GCCGT":52577, "GCCGC":95401, "GCCGG":77772, "GCGAA":43764, "GCGAT":47044, "GCGAC":46024, "GCGAG":41131, "GCGTA":15569, "GCGTT":33930, "GCGTC":34859, "GCGTG":31502, "GCGCA":40638, "GCGCT":40681, "GCGCC":66547, "GCGCG":44074, "GCGGA":56803, "GCGGT":59079, "GCGGC":84931, "GCGGG":70882, "GGAAA":63303, "GGAAT":48177, "GGAAC":71726, "GGAAG":67669, "GGATA":40801, "GGATT":55172, "GGATC":46235, "GGATG":67552, "GGACA":40417, "GGACT":29676, "GGACC":38354, "GGACG":46442, "GGAGA":81345, "GGAGT":33684, "GGAGC":67259, "GGAGG":104585, "GGTAA":24312, "GGTAT":31928, "GGTAC":23409, "GGTAG":29838, "GGTTA":23227, "GGTTT":66490, "GGTTC":60144, "GGTTG":89044, "GGTCA":42336, "GGTCT":51087, "GGTCC":39315, "GGTCG":51104, "GGTGA":55910, "GGTGT":44818, "GGTGC":57592, "GGTGG":106002, "GGCAA":62788, "GGCAT":50286, "GGCAC":42072, "GGCAG":71751, "GGCTA":26569, "GGCTT":64739, "GGCTC":46992, "GGCTG":77123, "GGCCA":59630, "GGCCT":55092, "GGCCC":51100, "GGCCG":65866, "GGCGA":77012, "GGCGT":43200, "GGCGC":61929, "GGCGG":115844, "GGGAA":52226, "GGGAT":53596, "GGGAC":36077, "GGGAG":56218, "GGGTA":24349, "GGGTT":68534, "GGGTC":42176, "GGGTG":64516, "GGGCA":55967, "GGGCT":52038, "GGGCC":46105, "GGGCG":64816, "GGGGA":55528, "GGGGT":59618, "GGGGC":62506, "GGGGG":50856 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-20C_S107_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-20C_S107_R2_001.fastq.gz -o AM-AL-20C.trim.R1.fastq.gz -O AM-AL-20C.trim.R2.fastq.gz -m --merged_out AM-AL-20C.trim.merged.fastq.gz " }