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"CTCGC":61810, "CTCGG":64597, "CTGAA":215150, "CTGAT":59593, "CTGAC":43291, "CTGAG":50512, "CTGTA":28199, "CTGTT":75668, "CTGTC":47252, "CTGTG":46400, "CTGCA":64196, "CTGCT":124632, "CTGCC":103560, "CTGCG":64960, "CTGGA":95463, "CTGGT":86559, "CTGGC":89492, "CTGGG":82961, "CCAAA":89851, "CCAAT":63004, "CCAAC":94358, "CCAAG":87770, "CCATA":54518, "CCATT":64391, "CCATC":96041, "CCATG":64963, "CCACA":80824, "CCACT":48053, "CCACC":138272, "CCACG":64090, "CCAGA":137799, "CCAGT":127433, "CCAGC":117829, "CCAGG":83833, "CCTAA":27800, "CCTAT":36763, "CCTAC":36121, "CCTAG":36361, "CCTTA":34718, "CCTTT":80534, "CCTTC":124808, "CCTTG":88141, "CCTCA":71316, "CCTCT":73748, "CCTCC":150877, "CCTCG":79987, "CCTGA":69717, "CCTGT":74005, "CCTGC":138758, "CCTGG":87683, "CCCAA":91865, "CCCAT":66532, "CCCAC":92238, "CCCAG":102826, "CCCTA":34758, "CCCTT":79157, "CCCTC":76141, "CCCTG":75331, "CCCCA":106328, "CCCCT":68523, "CCCCC":81360, "CCCCG":80980, "CCCGA":69931, "CCCGT":52954, "CCCGC":97574, 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"CGGAT":61980, "CGGAC":38016, "CGGAG":76934, "CGGTA":42799, "CGGTT":66248, "CGGTC":62647, "CGGTG":72466, "CGGCA":84615, "CGGCT":75787, "CGGCC":85543, "CGGCG":108137, "CGGGA":67061, "CGGGT":56218, "CGGGC":64832, "CGGGG":70361, "GAAAA":91251, "GAAAT":67625, "GAAAC":64923, "GAAAG":78053, "GAATA":46722, "GAATT":52959, "GAATC":57162, "GAATG":55151, "GAACA":69034, "GAACT":182677, "GAACC":70554, "GAACG":49504, "GAAGA":559624, "GAAGT":53165, "GAAGC":83408, "GAAGG":84501, "GATAA":49836, "GATAT":50454, "GATAC":35330, "GATAG":64186, "GATTA":39516, "GATTT":71316, "GATTC":61933, "GATTG":69326, "GATCA":62862, "GATCT":60220, "GATCC":63546, "GATCG":592903, "GATGA":97073, "GATGT":56271, "GATGC":64251, "GATGG":91829, "GACAA":58823, "GACAT":43905, "GACAC":34126, "GACAG":52686, "GACTA":25454, "GACTT":48155, "GACTC":32034, "GACTG":39830, "GACCA":66328, "GACCT":53202, "GACCC":54669, "GACCG":58884, "GACGA":73618, "GACGT":31294, "GACGC":46601, "GACGG":58836, "GAGAA":88822, "GAGAT":174656, "GAGAC":53931, "GAGAG":60222, "GAGTA":26989, "GAGTT":49867, "GAGTC":30230, "GAGTG":31290, "GAGCA":424204, "GAGCT":43040, "GAGCC":57144, "GAGCG":47496, "GAGGA":118017, "GAGGT":56373, "GAGGC":75363, "GAGGG":56414, "GTAAA":30665, "GTAAT":27564, "GTAAC":21213, "GTAAG":25967, "GTATA":19536, "GTATT":36818, "GTATC":34527, "GTATG":28723, "GTACA":22382, "GTACT":24803, "GTACC":29779, "GTACG":19212, "GTAGA":89210, "GTAGT":28712, "GTAGC":31441, "GTAGG":30302, "GTTAA":20366, "GTTAT":33934, "GTTAC":23758, "GTTAG":33676, "GTTTA":32074, "GTTTT":75029, "GTTTC":77008, "GTTTG":71476, "GTTCA":60707, "GTTCT":69075, "GTTCC":99279, "GTTCG":56211, "GTTGA":66969, "GTTGT":64256, "GTTGC":68076, "GTTGG":90976, "GTCAA":52878, "GTCAT":48869, "GTCAC":70700, "GTCAG":50564, "GTCTA":28312, "GTCTT":62648, "GTCTC":60167, "GTCTG":237732, "GTCCA":58265, "GTCCT":62524, "GTCCC":49547, "GTCCG":39687, "GTCGA":52514, "GTCGT":49907, "GTCGC":56854, "GTCGG":58423, "GTGAA":48891, "GTGAT":51579, "GTGAC":32876, "GTGAG":40555, "GTGTA":19886, "GTGTT":45314, "GTGTC":33262, "GTGTG":34734, "GTGCA":38744, "GTGCT":52123, "GTGCC":51179, "GTGCG":37899, "GTGGA":65691, "GTGGT":83688, "GTGGC":68664, "GTGGG":76143, "GCAAA":64610, "GCAAT":53596, "GCAAC":60351, "GCAAG":73932, "GCATA":35593, "GCATT":48379, "GCATC":62343, "GCATG":43324, "GCACA":346558, "GCACT":31084, "GCACC":71052, "GCACG":37673, "GCAGA":124534, "GCAGT":40886, "GCAGC":75786, "GCAGG":111770, "GCTAA":20996, "GCTAT":32968, "GCTAC":31465, "GCTAG":31929, "GCTTA":26727, "GCTTT":69009, "GCTTC":102169, "GCTTG":74476, "GCTCA":50803, "GCTCT":50648, "GCTCC":91949, "GCTCG":57434, "GCTGA":64126, "GCTGT":50662, "GCTGC":83834, "GCTGG":116369, "GCCAA":84360, "GCCAT":71011, "GCCAC":71914, "GCCAG":104679, "GCCTA":35573, "GCCTT":80671, "GCCTC":88270, "GCCTG":89290, "GCCCA":82039, "GCCCT":65461, "GCCCC":85011, "GCCCG":71728, "GCCGA":86957, "GCCGT":65142, "GCCGC":112158, "GCCGG":92277, "GCGAA":57945, "GCGAT":60453, "GCGAC":50968, "GCGAG":56946, "GCGTA":23829, "GCGTT":44682, "GCGTC":44800, "GCGTG":39196, "GCGCA":53134, "GCGCT":51288, "GCGCC":79157, "GCGCG":55043, "GCGGA":72642, "GCGGT":72026, "GCGGC":100693, "GCGGG":82574, "GGAAA":83704, "GGAAT":62744, "GGAAC":80961, "GGAAG":532355, "GGATA":59713, "GGATT":72323, "GGATC":58914, "GGATG":83846, "GGACA":51828, "GGACT":37645, "GGACC":44305, "GGACG":53821, "GGAGA":143913, "GGAGT":41977, "GGAGC":75720, "GGAGG":117654, "GGTAA":34346, "GGTAT":42435, "GGTAC":28690, "GGTAG":59126, "GGTTA":36016, "GGTTT":85057, "GGTTC":75320, "GGTTG":104845, "GGTCA":58107, "GGTCT":64468, "GGTCC":47847, "GGTCG":64862, "GGTGA":70031, "GGTGT":54506, "GGTGC":67106, "GGTGG":121443, "GGCAA":81098, "GGCAT":62853, "GGCAC":48305, "GGCAG":103639, "GGCTA":38661, "GGCTT":81145, "GGCTC":59589, "GGCTG":92755, "GGCCA":76376, "GGCCT":67327, "GGCCC":60135, "GGCCG":79637, "GGCGA":92366, "GGCGT":54971, "GGCGC":74383, "GGCGG":132476, "GGGAA":67917, "GGGAT":67535, "GGGAC":42228, "GGGAG":77251, "GGGTA":35947, "GGGTT":82280, "GGGTC":52655, "GGGTG":73770, "GGGCA":71764, "GGGCT":62031, "GGGCC":54687, "GGGCG":75068, "GGGGA":69824, "GGGGT":70588, "GGGGC":71687, "GGGGG":86307 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1186085, "total_bases": 72351185, "q20_bases": 70718966, "q30_bases": 67815958, "total_cycles": 61, "quality_curves": { "A":[39.4298,39.2429,39.1952,39.085,39.1168,39.1636,39.1291,38.9911,39.1108,39.0967,39.1011,39.1064,39.1191,39.1109,39.0853,39.0858,39.1147,39.1087,39.1243,39.0954,38.8714,39.0884,39.1097,39.1147,38.8979,39.1012,39.1146,38.8735,39.0364,38.9452,39.0804,39.1011,39.0636,39.085,39.0924,39.0061,39.0725,38.9546,38.876,38.9806,38.965,38.8711,38.8552,38.7903,38.6984,38.5357,38.2308,38.1438,38.2407,37.9549,37.7712,37.5534,37.4223,36.9976,36.8389,36.4824,36.2626,36.0526,35.7883,35.2834,35.0577], 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"CCTGG":82522, "CCCAA":81930, "CCCAT":62045, "CCCAC":84051, "CCCAG":79555, "CCCTA":27943, "CCCTT":59547, "CCCTC":69496, "CCCTG":70549, "CCCCA":92312, "CCCCT":63040, "CCCCC":70694, "CCCCG":75657, "CCCGA":62241, "CCCGT":49354, "CCCGC":91175, "CCCGG":68349, "CCGAA":63302, "CCGAT":63649, "CCGAC":57589, "CCGAG":55238, "CCGTA":27787, "CCGTT":54311, "CCGTC":66445, "CCGTG":47465, "CCGCA":65817, "CCGCT":68204, "CCGCC":144198, "CCGCG":64141, "CCGGA":63616, "CCGGT":65940, "CCGGC":93463, "CCGGG":63204, "CGAAA":54818, "CGAAT":41962, "CGAAC":48765, "CGAAG":64692, "CGATA":37948, "CGATT":50912, "CGATC":61795, "CGATG":73812, "CGACA":44190, "CGACT":36855, "CGACC":61123, "CGACG":56098, "CGAGA":51083, "CGAGT":31638, "CGAGC":48271, "CGAGG":63537, "CGTAA":20865, "CGTAT":21430, "CGTAC":18807, "CGTAG":27964, "CGTTA":18611, "CGTTT":43785, "CGTTC":54094, "CGTTG":49879, "CGTCA":45523, "CGTCT":50316, "CGTCC":57897, "CGTCG":58986, "CGTGA":36673, "CGTGT":24320, "CGTGC":35349, "CGTGG":55560, "CGCAA":46920, "CGCAT":37809, "CGCAC":39199, "CGCAG":53285, "CGCTA":21717, "CGCTT":54686, "CGCTC":54406, "CGCTG":63246, "CGCCA":83233, "CGCCT":92029, "CGCCC":84740, "CGCCG":108707, "CGCGA":44356, "CGCGT":31307, "CGCGC":55011, "CGCGG":60884, "CGGAA":57716, "CGGAT":57831, "CGGAC":34925, "CGGAG":62236, "CGGTA":34076, "CGGTT":62199, "CGGTC":58802, "CGGTG":67614, "CGGCA":72771, "CGGCT":71050, "CGGCC":80292, "CGGCG":99763, "CGGGA":59817, "CGGGT":53125, "CGGGC":60577, "CGGGG":65217, "GAAAA":82613, "GAAAT":63345, "GAAAC":60970, "GAAAG":62907, "GAATA":40816, "GAATT":49503, "GAATC":53546, "GAATG":51845, "GAACA":61020, "GAACT":58236, "GAACC":64990, "GAACG":46101, "GAAGA":94921, "GAAGT":50199, "GAAGC":77267, "GAAGG":78509, "GATAA":45660, "GATAT":47577, "GATAC":33003, "GATAG":41519, "GATTA":34095, "GATTT":66484, "GATTC":57528, "GATTG":65484, "GATCA":55504, "GATCT":55503, "GATCC":59383, "GATCG":56341, "GATGA":88497, "GATGT":53102, "GATGC":60037, "GATGG":86528, "GACAA":53677, "GACAT":41281, "GACAC":31303, "GACAG":36885, "GACTA":21098, "GACTT":45201, "GACTC":29502, "GACTG":37183, "GACCA":58093, "GACCT":49778, "GACCC":50938, "GACCG":54913, "GACGA":66636, "GACGT":29087, "GACGC":42674, "GACGG":55568, "GAGAA":80593, "GAGAT":58291, "GAGAC":50266, "GAGAG":46932, "GAGTA":22410, "GAGTT":46518, "GAGTC":28248, "GAGTG":29381, "GAGCA":66925, "GAGCT":40123, "GAGCC":53211, "GAGCG":44060, "GAGGA":106000, "GAGGT":53255, "GAGGC":70559, "GAGGG":52680, "GTAAA":27961, "GTAAT":25942, "GTAAC":19547, "GTAAG":20753, "GTATA":16740, "GTATT":34375, "GTATC":32146, "GTATG":27175, "GTACA":19444, "GTACT":22884, "GTACC":28035, "GTACG":18080, "GTAGA":31728, "GTAGT":26754, "GTAGC":29508, "GTAGG":28297, "GTTAA":18621, "GTTAT":31977, "GTTAC":22312, "GTTAG":19366, "GTTTA":26956, "GTTTT":70194, "GTTTC":71318, "GTTTG":67067, "GTTCA":54467, "GTTCT":64891, "GTTCC":92593, "GTTCG":52803, "GTTGA":60921, "GTTGT":59964, "GTTGC":63839, "GTTGG":85779, "GTCAA":47466, "GTCAT":45767, "GTCAC":33402, "GTCAG":37990, "GTCTA":22381, "GTCTT":58134, "GTCTC":58397, "GTCTG":48959, "GTCCA":52204, "GTCCT":58559, "GTCCC":47186, "GTCCG":37589, "GTCGA":47050, "GTCGT":47131, "GTCGC":53393, "GTCGG":54594, "GTGAA":43845, "GTGAT":48514, "GTGAC":31010, "GTGAG":33053, "GTGTA":16171, "GTGTT":42422, "GTGTC":30799, "GTGTG":32501, "GTGCA":34041, "GTGCT":48396, "GTGCC":48245, "GTGCG":35684, "GTGGA":58994, "GTGGT":78384, "GTGGC":64801, "GTGGG":71511, "GCAAA":56720, "GCAAT":50118, "GCAAC":55808, "GCAAG":58765, "GCATA":29698, "GCATT":45057, "GCATC":57854, "GCATG":40364, "GCACA":35428, "GCACT":28490, "GCACC":64898, "GCACG":34668, "GCAGA":64544, "GCAGT":38491, "GCAGC":70957, "GCAGG":103319, "GCTAA":18353, "GCTAT":30966, "GCTAC":29389, "GCTAG":16700, "GCTTA":21456, "GCTTT":64506, "GCTTC":95676, "GCTTG":69185, "GCTCA":45223, "GCTCT":46608, "GCTCC":86513, "GCTCG":53457, "GCTGA":57648, "GCTGT":47493, "GCTGC":78506, "GCTGG":109994, "GCCAA":75248, "GCCAT":67024, "GCCAC":67076, "GCCAG":78913, "GCCTA":28058, "GCCTT":75793, "GCCTC":83006, "GCCTG":83396, "GCCCA":71616, "GCCCT":61308, "GCCCC":79827, "GCCCG":66690, "GCCGA":77591, "GCCGT":61941, "GCCGC":104194, "GCCGG":86582, "GCGAA":50636, "GCGAT":56272, "GCGAC":46885, "GCGAG":47213, "GCGTA":19220, "GCGTT":41216, "GCGTC":42006, "GCGTG":36169, "GCGCA":45541, "GCGCT":47508, "GCGCC":74491, "GCGCG":50990, "GCGGA":64007, "GCGGT":67517, "GCGGC":93847, "GCGGG":76885, "GGAAA":74461, "GGAAT":59330, "GGAAC":75688, "GGAAG":75039, "GGATA":49552, "GGATT":68390, "GGATC":54477, "GGATG":78343, "GGACA":44579, "GGACT":35170, "GGACC":41126, "GGACG":49570, "GGAGA":89339, "GGAGT":39554, "GGAGC":70941, "GGAGG":108389, "GGTAA":30564, "GGTAT":39707, "GGTAC":26584, "GGTAG":35414, "GGTTA":29056, "GGTTT":79968, "GGTTC":70840, "GGTTG":97908, "GGTCA":51309, "GGTCT":60604, "GGTCC":45193, "GGTCG":61061, "GGTGA":63182, "GGTGT":50754, "GGTGC":62606, "GGTGG":113271, "GGCAA":71704, "GGCAT":58907, "GGCAC":44426, "GGCAG":77622, "GGCTA":31816, "GGCTT":76039, "GGCTC":55811, "GGCTG":86540, "GGCCA":66251, "GGCCT":63631, "GGCCC":56320, "GGCCG":74453, "GGCGA":82981, "GGCGT":51211, "GGCGC":68883, "GGCGG":123046, "GGGAA":60301, "GGGAT":63127, "GGGAC":39545, "GGGAG":60358, "GGGTA":28300, "GGGTT":77213, "GGGTC":49741, "GGGTG":67947, "GGGCA":61801, "GGGCT":58386, "GGGCC":51740, "GGGCG":69493, "GGGGA":61548, "GGGGT":64941, "GGGGC":67002, "GGGGG":54167 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-20B_S106_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-20B_S106_R2_001.fastq.gz -o AM-AL-20B.trim.R1.fastq.gz -O AM-AL-20B.trim.R2.fastq.gz -m --merged_out AM-AL-20B.trim.merged.fastq.gz " }