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"GCGTC":47001, "GCGTG":42518, "GCGCA":52555, "GCGCT":51986, "GCGCC":73682, "GCGCG":56237, "GCGGA":73593, "GCGGT":61899, "GCGGC":91256, "GCGGG":75187, "GGAAA":103827, "GGAAT":62746, "GGAAC":72446, "GGAAG":457832, "GGATA":57557, "GGATT":65627, "GGATC":51612, "GGATG":76548, "GGACA":57316, "GGACT":40075, "GGACC":46222, "GGACG":52157, "GGAGA":162387, "GGAGT":45761, "GGAGC":72490, "GGAGG":128114, "GGTAA":33035, "GGTAT":34339, "GGTAC":26498, "GGTAG":55283, "GGTTA":38433, "GGTTT":95229, "GGTTC":73857, "GGTTG":95812, "GGTCA":56485, "GGTCT":67737, "GGTCC":42033, "GGTCG":55405, "GGTGA":80229, "GGTGT":52238, "GGTGC":58645, "GGTGG":101090, "GGCAA":86710, "GGCAT":61750, "GGCAC":50096, "GGCAG":96220, "GGCTA":48907, "GGCTT":97416, "GGCTC":63962, "GGCTG":102356, "GGCCA":76128, "GGCCT":65067, "GGCCC":57038, "GGCCG":76542, "GGCGA":98632, "GGCGT":59250, "GGCGC":71937, "GGCGG":116289, "GGGAA":73432, "GGGAT":59769, "GGGAC":45063, "GGGAG":93182, "GGGTA":36064, "GGGTT":86121, "GGGTC":52384, "GGGTG":72857, "GGGCA":70961, "GGGCT":70464, "GGGCC":52210, "GGGCG":73520, "GGGGA":77938, "GGGGT":72009, "GGGGC":63941, "GGGGG":126777 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1234055, "total_bases": 75277355, "q20_bases": 73675341, "q30_bases": 70623349, "total_cycles": 61, "quality_curves": { "A":[39.3834,39.2112,38.9858,39.0092,39.0491,39.0444,39.0784,38.8568,39.0765,39.0641,39.1046,39.0909,39.1115,39.091,39.0655,39.0668,39.1127,39.0778,39.1009,39.0887,38.6269,39.0386,39.0743,39.0913,38.7392,39.0737,39.0862,38.5447,39.0095,38.6903,39.0521,39.0628,39.0074,39.0336,38.9162,38.5828,38.975,38.9753,38.9498,38.8993,38.8758,38.8084,38.7869,38.7366,38.639,38.4667,38.159,38.0056,38.3347,38.0797,37.9516,37.7947,37.6854,37.3261,37.2374,37.0432,36.8501,36.6705,36.5897,36.042,35.9772], 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"CTTGA":59727, "CTTGT":57974, "CTTGC":55464, "CTTGG":70958, "CTCAA":59612, "CTCAT":44623, "CTCAC":39636, "CTCAG":49042, "CTCTA":32073, "CTCTT":70514, "CTCTC":54519, "CTCTG":51461, "CTCCA":83009, "CTCCT":113064, "CTCCC":76085, "CTCCG":60732, "CTCGA":51092, "CTCGT":40613, "CTCGC":48383, "CTCGG":48747, "CTGAA":63140, "CTGAT":44951, "CTGAC":38055, "CTGAG":45435, "CTGTA":20937, "CTGTT":60447, "CTGTC":39207, "CTGTG":39075, "CTGCA":56568, "CTGCT":82243, "CTGCC":74262, "CTGCG":48665, "CTGGA":74942, "CTGGT":63574, "CTGGC":69350, "CTGGG":65449, "CCAAA":101281, "CCAAT":49721, "CCAAC":97427, "CCAAG":78136, "CCATA":41010, "CCATT":48759, "CCATC":71842, "CCATG":51369, "CCACA":78128, "CCACT":40439, "CCACC":113695, "CCACG":50375, "CCAGA":76329, "CCAGT":49140, "CCAGC":105194, "CCAGG":66624, "CCTAA":28917, "CCTAT":33739, "CCTAC":39796, "CCTAG":26643, "CCTTA":28827, "CCTTT":73128, "CCTTC":97007, "CCTTG":67233, "CCTCA":71189, "CCTCT":68025, "CCTCC":123815, "CCTCG":62334, "CCTGA":58025, "CCTGT":52650, "CCTGC":91978, "CCTGG":67355, "CCCAA":96020, "CCCAT":54587, "CCCAC":82753, "CCCAG":76428, "CCCTA":35358, "CCCTT":57475, "CCCTC":72129, "CCCTG":61582, "CCCCA":90140, "CCCCT":62892, "CCCCC":62854, "CCCCG":63135, "CCCGA":50759, "CCCGT":35677, "CCCGC":72097, "CCCGG":52429, "CCGAA":57865, "CCGAT":43043, "CCGAC":47760, "CCGAG":50738, "CCGTA":25050, "CCGTT":39998, "CCGTC":49271, "CCGTG":36548, "CCGCA":57946, "CCGCT":54860, "CCGCC":109855, "CCGCG":47399, "CCGGA":49468, "CCGGT":42175, "CCGGC":68194, "CCGGG":49767, "CGAAA":61740, "CGAAT":34571, "CGAAC":46188, "CGAAG":63998, "CGATA":31425, "CGATT":42761, "CGATC":42081, "CGATG":55186, "CGACA":45419, "CGACT":36651, "CGACC":54127, "CGACG":50090, "CGAGA":50820, "CGAGT":27247, "CGAGC":45047, "CGAGG":57789, "CGTAA":23657, "CGTAT":20104, "CGTAC":17536, "CGTAG":26634, "CGTTA":17948, "CGTTT":43218, "CGTTC":40646, "CGTTG":43007, "CGTCA":40157, "CGTCT":41988, "CGTCC":42786, "CGTCG":46707, "CGTGA":31611, "CGTGT":22577, "CGTGC":30183, "CGTGG":42330, "CGCAA":44772, "CGCAT":31861, "CGCAC":35699, "CGCAG":47760, "CGCTA":22033, "CGCTT":50844, "CGCTC":44119, "CGCTG":54021, "CGCCA":76279, "CGCCT":73544, "CGCCC":70427, "CGCCG":80773, "CGCGA":37598, "CGCGT":25985, "CGCGC":44971, "CGCGG":45665, "CGGAA":52768, "CGGAT":37853, "CGGAC":29483, "CGGAG":54214, "CGGTA":24259, "CGGTT":46794, "CGGTC":42656, "CGGTG":48439, "CGGCA":56555, "CGGCT":60932, "CGGCC":62878, "CGGCG":78083, "CGGGA":44250, "CGGGT":39562, "CGGGC":47436, "CGGGG":52416, "GAAAA":111933, "GAAAT":64709, "GAAAC":69128, "GAAAG":76649, "GAATA":39446, "GAATT":45409, "GAATC":47730, "GAATG":41782, "GAACA":61244, "GAACT":48485, "GAACC":66381, "GAACG":41344, "GAAGA":106292, "GAAGT":48120, "GAAGC":86430, "GAAGG":84610, "GATAA":43708, "GATAT":34932, "GATAC":27885, "GATAG":38131, "GATTA":31169, "GATTT":59895, "GATTC":49350, "GATTG":47896, "GATCA":46129, "GATCT":42785, "GATCC":43971, "GATCG":39813, "GATGA":70476, "GATGT":42288, "GATGC":47927, "GATGG":64760, "GACAA":60815, "GACAT":38522, "GACAC":31826, "GACAG":39559, "GACTA":22987, "GACTT":44145, "GACTC":30013, "GACTG":35270, "GACCA":57631, "GACCT":45599, "GACCC":54110, "GACCG":43501, "GACGA":58365, "GACGT":28282, "GACGC":40114, "GACGG":46540, "GAGAA":93327, "GAGAT":54578, "GAGAC":53117, "GAGAG":49677, "GAGTA":21370, "GAGTT":42145, "GAGTC":27138, "GAGTG":24374, "GAGCA":55343, "GAGCT":40902, "GAGCC":51388, "GAGCG":39555, "GAGGA":101804, "GAGGT":51064, "GAGGC":68186, "GAGGG":54764, "GTAAA":25645, "GTAAT":20231, "GTAAC":21746, "GTAAG":18347, "GTATA":14372, "GTATT":26738, "GTATC":24689, "GTATG":23396, "GTACA":19213, "GTACT":17664, "GTACC":20003, "GTACG":17354, "GTAGA":33785, "GTAGT":22080, "GTAGC":27103, "GTAGG":30305, "GTTAA":22522, "GTTAT":27157, "GTTAC":24633, "GTTAG":18251, "GTTTA":25754, "GTTTT":75679, "GTTTC":61215, "GTTTG":64863, "GTTCA":48405, "GTTCT":57503, "GTTCC":58152, "GTTCG":42272, "GTTGA":59359, "GTTGT":53789, "GTTGC":50639, "GTTGG":72851, "GTCAA":46572, "GTCAT":36242, "GTCAC":29907, "GTCAG":33061, "GTCTA":25011, "GTCTT":55541, "GTCTC":49312, "GTCTG":42360, "GTCCA":42319, "GTCCT":42855, "GTCCC":37011, "GTCCG":28065, "GTCGA":42268, "GTCGT":37587, "GTCGC":41103, "GTCGG":40478, "GTGAA":47949, "GTGAT":39113, "GTGAC":27616, "GTGAG":32373, "GTGTA":15776, "GTGTT":39569, "GTGTC":23935, "GTGTG":29072, "GTGCA":28690, "GTGCT":38701, "GTGCC":37125, "GTGCG":29249, "GTGGA":51172, "GTGGT":54051, "GTGGC":52314, "GTGGG":57796, "GCAAA":63918, "GCAAT":39950, "GCAAC":56675, "GCAAG":53315, "GCATA":29978, "GCATT":38520, "GCATC":48136, "GCATG":35306, "GCACA":36398, "GCACT":26834, "GCACC":56762, "GCACG":32895, "GCAGA":61906, "GCAGT":33527, "GCAGC":65360, "GCAGG":81242, "GCTAA":22134, "GCTAT":33090, "GCTAC":29901, "GCTAG":19792, "GCTTA":26992, "GCTTT":67640, "GCTTC":88673, "GCTTG":65696, "GCTCA":46034, "GCTCT":44236, "GCTCC":62215, "GCTCG":44434, "GCTGA":60408, "GCTGT":44526, "GCTGC":63129, "GCTGG":90897, "GCCAA":79096, "GCCAT":54093, "GCCAC":62083, "GCCAG":69050, "GCCTA":35597, "GCCTT":64757, "GCCTC":74535, "GCCTG":69406, "GCCCA":72444, "GCCCT":56925, "GCCCC":62328, "GCCCG":51408, "GCCGA":65745, "GCCGT":49886, "GCCGC":78614, "GCCGG":63261, "GCGAA":51490, "GCGAT":44061, "GCGAC":45169, "GCGAG":43576, "GCGTA":20014, "GCGTT":37103, "GCGTC":35998, "GCGTG":32444, "GCGCA":38634, "GCGCT":40290, "GCGCC":58325, "GCGCG":43477, "GCGGA":54011, "GCGGT":48551, "GCGGC":72432, "GCGGG":58968, "GGAAA":81159, "GGAAT":50168, "GGAAC":57629, "GGAAG":77160, "GGATA":42104, "GGATT":52746, "GGATC":40593, "GGATG":60017, "GGACA":42688, "GGACT":30571, "GGACC":35796, "GGACG":39803, "GGAGA":95193, "GGAGT":35228, "GGAGC":56846, "GGAGG":101207, "GGTAA":24011, "GGTAT":26164, "GGTAC":19961, "GGTAG":35554, "GGTTA":28295, "GGTTT":77806, "GGTTC":59755, "GGTTG":77958, "GGTCA":42148, "GGTCT":53685, "GGTCC":33233, "GGTCG":42908, "GGTGA":59224, "GGTGT":42251, "GGTGC":46441, "GGTGG":81188, "GGCAA":65476, "GGCAT":48551, "GGCAC":39256, "GGCAG":64459, "GGCTA":34976, "GGCTT":77714, "GGCTC":51172, "GGCTG":81949, "GGCCA":56561, "GGCCT":52090, "GGCCC":45293, "GGCCG":58786, "GGCGA":74356, "GGCGT":45839, "GGCGC":55531, "GGCGG":91901, "GGGAA":55491, "GGGAT":46993, "GGGAC":34298, "GGGAG":63480, "GGGTA":25749, "GGGTT":70005, "GGGTC":42004, "GGGTG":56827, "GGGCA":53152, "GGGCT":56213, "GGGCC":40863, "GGGCG":57039, "GGGGA":57795, "GGGGT":55341, "GGGGC":50822, "GGGGG":44365 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-1C_S49_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-1C_S49_R2_001.fastq.gz -o AM-AL-1C.trim.R1.fastq.gz -O AM-AL-1C.trim.R2.fastq.gz -m --merged_out AM-AL-1C.trim.merged.fastq.gz " }