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"GCGTC":48555, "GCGTG":43758, "GCGCA":54732, "GCGCT":53290, "GCGCC":76034, "GCGCG":57927, "GCGGA":74702, "GCGGT":62786, "GCGGC":93374, "GCGGG":75193, "GGAAA":102350, "GGAAT":63757, "GGAAC":73885, "GGAAG":436039, "GGATA":58960, "GGATT":66452, "GGATC":54672, "GGATG":78828, "GGACA":57633, "GGACT":41456, "GGACC":47410, "GGACG":53696, "GGAGA":160258, "GGAGT":46118, "GGAGC":73614, "GGAGG":131267, "GGTAA":33350, "GGTAT":34581, "GGTAC":28022, "GGTAG":56329, "GGTTA":38885, "GGTTT":92695, "GGTTC":76191, "GGTTG":94875, "GGTCA":57824, "GGTCT":68659, "GGTCC":44264, "GGTCG":56705, "GGTGA":80543, "GGTGT":51999, "GGTGC":59491, "GGTGG":100757, "GGCAA":88761, "GGCAT":64327, "GGCAC":51257, "GGCAG":97935, "GGCTA":49107, "GGCTT":96465, "GGCTC":64998, "GGCTG":103605, "GGCCA":78457, "GGCCT":67856, "GGCCC":59212, "GGCCG":79000, "GGCGA":98505, "GGCGT":60337, "GGCGC":73790, "GGCGG":116257, "GGGAA":74494, "GGGAT":61695, "GGGAC":46637, "GGGAG":95582, "GGGTA":36818, "GGGTT":84200, "GGGTC":53673, "GGGTG":72049, "GGGCA":73659, "GGGCT":70843, "GGGCC":55094, "GGGCG":73967, "GGGGA":81290, "GGGGT":69987, "GGGGC":65728, "GGGGG":121954 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1237215, "total_bases": 75470115, "q20_bases": 73946038, "q30_bases": 70980409, "total_cycles": 61, "quality_curves": { "A":[39.4199,39.1886,39.1395,38.8366,39.0503,39.1386,39.0813,38.9162,39.0944,39.0792,39.0872,39.0858,39.115,39.1075,39.0804,39.082,39.1055,39.0993,39.1062,39.0909,38.7036,39.0735,39.1031,39.1195,38.7224,39.095,39.1053,38.6427,39.029,38.812,39.0755,39.0828,39.0299,39.0611,39.0415,38.9987,39.0327,39.0185,38.9925,38.9388,38.9342,38.4647,38.8254,38.7854,38.674,38.5346,38.1863,38.1282,38.409,38.1951,38.0397,37.9009,37.8129,37.462,37.3992,37.2011,37.041,36.8252,36.7369,36.2467,36.1544], 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"CTTGA":59165, "CTTGT":58049, "CTTGC":55655, "CTTGG":69389, "CTCAA":59471, "CTCAT":45601, "CTCAC":40389, "CTCAG":48304, "CTCTA":31615, "CTCTT":69761, "CTCTC":55692, "CTCTG":51374, "CTCCA":82288, "CTCCT":113769, "CTCCC":76563, "CTCCG":61632, "CTCGA":51476, "CTCGT":41191, "CTCGC":49766, "CTCGG":49818, "CTGAA":62705, "CTGAT":45267, "CTGAC":38653, "CTGAG":45120, "CTGTA":21037, "CTGTT":59121, "CTGTC":39177, "CTGTG":39069, "CTGCA":57368, "CTGCT":82930, "CTGCC":75243, "CTGCG":48074, "CTGGA":73614, "CTGGT":63343, "CTGGC":70027, "CTGGG":65535, "CCAAA":96302, "CCAAT":49999, "CCAAC":94447, "CCAAG":75208, "CCATA":40255, "CCATT":49279, "CCATC":71952, "CCATG":51986, "CCACA":75852, "CCACT":40308, "CCACC":111855, "CCACG":50173, "CCAGA":73847, "CCAGT":49654, "CCAGC":104071, "CCAGG":67716, "CCTAA":28757, "CCTAT":34048, "CCTAC":39513, "CCTAG":25968, "CCTTA":29293, "CCTTT":72605, "CCTTC":98064, "CCTTG":69189, "CCTCA":71009, "CCTCT":67656, "CCTCC":123705, "CCTCG":64316, "CCTGA":58862, "CCTGT":52809, "CCTGC":93348, "CCTGG":67935, "CCCAA":92718, "CCCAT":54635, "CCCAC":80917, "CCCAG":76089, "CCCTA":35288, "CCCTT":57929, "CCCTC":71278, "CCCTG":62479, "CCCCA":88252, "CCCCT":62263, "CCCCC":62439, "CCCCG":63646, "CCCGA":51352, "CCCGT":35741, "CCCGC":72102, "CCCGG":54444, "CCGAA":57795, "CCGAT":44665, "CCGAC":48486, "CCGAG":50354, "CCGTA":25703, "CCGTT":39920, "CCGTC":50031, "CCGTG":37300, "CCGCA":58553, "CCGCT":55647, "CCGCC":108886, "CCGCG":48194, "CCGGA":51720, "CCGGT":44758, "CCGGC":69645, "CCGGG":50534, "CGAAA":61081, "CGAAT":34941, "CGAAC":46136, "CGAAG":64718, "CGATA":31565, "CGATT":42826, "CGATC":43949, "CGATG":57255, "CGACA":45404, "CGACT":37560, "CGACC":53526, "CGACG":49359, "CGAGA":50648, "CGAGT":27212, "CGAGC":44973, "CGAGG":57098, "CGTAA":23507, "CGTAT":20579, "CGTAC":17830, "CGTAG":26529, "CGTTA":17878, "CGTTT":43308, "CGTTC":41486, "CGTTG":43085, "CGTCA":41573, "CGTCT":42173, "CGTCC":43103, "CGTCG":47383, "CGTGA":31965, "CGTGT":22153, "CGTGC":30688, "CGTGG":42331, "CGCAA":44415, "CGCAT":32545, "CGCAC":36110, "CGCAG":47712, "CGCTA":22107, "CGCTT":51287, "CGCTC":45060, "CGCTG":53820, "CGCCA":74144, "CGCCT":74426, "CGCCC":70710, "CGCCG":82427, "CGCGA":37950, "CGCGT":26229, "CGCGC":46709, "CGCGG":45885, "CGGAA":52922, "CGGAT":39258, "CGGAC":30419, "CGGAG":54616, "CGGTA":25154, "CGGTT":46472, "CGGTC":44302, "CGGTG":48692, "CGGCA":57331, "CGGCT":61739, "CGGCC":64148, "CGGCG":78044, "CGGGA":44132, "CGGGT":39663, "CGGGC":48170, "CGGGG":52807, "GAAAA":106452, "GAAAT":62655, "GAAAC":67949, "GAAAG":74052, "GAATA":38854, "GAATT":44207, "GAATC":47601, "GAATG":41429, "GAACA":60669, "GAACT":48063, "GAACC":66716, "GAACG":41938, "GAAGA":102622, "GAAGT":47175, "GAAGC":84466, "GAAGG":83416, "GATAA":42830, "GATAT":34179, "GATAC":28470, "GATAG":37561, "GATTA":30160, "GATTT":57924, "GATTC":49369, "GATTG":48922, "GATCA":48368, "GATCT":43715, "GATCC":45410, "GATCG":41101, "GATGA":70907, "GATGT":42755, "GATGC":49021, "GATGG":64379, "GACAA":58560, "GACAT":38650, "GACAC":30762, "GACAG":38780, "GACTA":22891, "GACTT":44129, "GACTC":30485, "GACTG":34167, "GACCA":56326, "GACCT":45581, "GACCC":53349, "GACCG":44340, "GACGA":58153, "GACGT":28476, "GACGC":39693, "GACGG":45548, "GAGAA":90779, "GAGAT":53470, "GAGAC":52044, "GAGAG":48461, "GAGTA":21153, "GAGTT":41135, "GAGTC":27159, "GAGTG":24261, "GAGCA":55397, "GAGCT":40101, "GAGCC":51981, "GAGCG":39314, "GAGGA":99580, "GAGGT":50565, "GAGGC":67250, "GAGGG":54198, "GTAAA":24916, "GTAAT":19979, "GTAAC":21959, "GTAAG":18004, "GTATA":14262, "GTATT":26612, "GTATC":25172, "GTATG":23344, "GTACA":19228, "GTACT":17918, "GTACC":20268, "GTACG":18167, "GTAGA":32747, "GTAGT":21339, "GTAGC":27594, "GTAGG":29493, "GTTAA":21843, "GTTAT":26844, "GTTAC":24748, "GTTAG":17760, "GTTTA":25521, "GTTTT":71943, "GTTTC":60674, "GTTTG":62458, "GTTCA":48816, "GTTCT":56342, "GTTCC":59031, "GTTCG":43198, "GTTGA":58517, "GTTGT":52068, "GTTGC":49933, "GTTGG":70160, "GTCAA":47428, "GTCAT":37044, "GTCAC":30120, "GTCAG":34301, "GTCTA":23851, "GTCTT":53828, "GTCTC":50514, "GTCTG":41807, "GTCCA":42401, "GTCCT":43453, "GTCCC":37737, "GTCCG":28975, "GTCGA":43002, "GTCGT":37309, "GTCGC":41852, "GTCGG":40875, "GTGAA":48005, "GTGAT":39611, "GTGAC":27191, "GTGAG":30747, "GTGTA":15376, "GTGTT":38091, "GTGTC":24417, "GTGTG":29031, "GTGCA":28574, "GTGCT":38216, "GTGCC":37561, "GTGCG":29672, "GTGGA":51099, "GTGGT":52984, "GTGGC":51842, "GTGGG":56770, "GCAAA":63322, "GCAAT":40176, "GCAAC":55940, "GCAAG":52426, "GCATA":30092, "GCATT":38843, "GCATC":48175, "GCATG":35706, "GCACA":35717, "GCACT":26667, "GCACC":56965, "GCACG":33454, "GCAGA":60373, "GCAGT":32915, "GCAGC":64498, "GCAGG":80885, "GCTAA":21766, "GCTAT":33287, "GCTAC":30739, "GCTAG":19178, "GCTTA":26286, "GCTTT":66704, "GCTTC":87093, "GCTTG":64033, "GCTCA":46632, "GCTCT":44166, "GCTCC":62424, "GCTCG":44831, "GCTGA":60127, "GCTGT":44274, "GCTGC":63777, "GCTGG":90663, "GCCAA":76902, "GCCAT":54949, "GCCAC":61330, "GCCAG":68470, "GCCTA":35257, "GCCTT":64883, "GCCTC":75446, "GCCTG":70031, "GCCCA":70855, "GCCCT":57445, "GCCCC":62309, "GCCCG":52438, "GCCGA":66458, "GCCGT":50774, "GCCGC":79288, "GCCGG":65470, "GCGAA":50969, "GCGAT":44747, "GCGAC":43897, "GCGAG":42757, "GCGTA":20252, "GCGTT":36719, "GCGTC":36273, "GCGTG":32070, "GCGCA":39357, "GCGCT":40371, "GCGCC":59214, "GCGCG":43755, "GCGGA":54177, "GCGGT":48415, "GCGGC":72896, "GCGGG":57805, "GGAAA":78386, "GGAAT":49885, "GGAAC":57820, "GGAAG":75761, "GGATA":42051, "GGATT":52358, "GGATC":42290, "GGATG":60661, "GGACA":42374, "GGACT":30812, "GGACC":36442, "GGACG":40015, "GGAGA":92585, "GGAGT":34659, "GGAGC":56275, "GGAGG":101248, "GGTAA":24066, "GGTAT":25864, "GGTAC":20817, "GGTAG":35231, "GGTTA":28147, "GGTTT":74416, "GGTTC":60301, "GGTTG":75584, "GGTCA":42927, "GGTCT":53611, "GGTCC":34496, "GGTCG":43406, "GGTGA":57532, "GGTGT":40954, "GGTGC":46325, "GGTGG":79538, "GGCAA":66078, "GGCAT":49415, "GGCAC":39525, "GGCAG":63990, "GGCTA":34738, "GGCTT":75153, "GGCTC":50384, "GGCTG":81883, "GGCCA":57122, "GGCCT":53021, "GGCCC":45545, "GGCCG":59772, "GGCGA":73540, "GGCGT":45663, "GGCGC":55956, "GGCGG":90754, "GGGAA":54676, "GGGAT":46951, "GGGAC":34771, "GGGAG":62480, "GGGTA":25607, "GGGTT":67218, "GGGTC":42130, "GGGTG":55251, "GGGCA":54426, "GGGCT":55322, "GGGCC":41988, "GGGCG":57298, "GGGGA":57383, "GGGGT":53353, "GGGGC":51472, "GGGGG":43609 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-1A_S47_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-1A_S47_R2_001.fastq.gz -o AM-AL-1A.trim.R1.fastq.gz -O AM-AL-1A.trim.R2.fastq.gz -m --merged_out AM-AL-1A.trim.merged.fastq.gz " }