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"GCGTT":48534, "GCGTC":44886, "GCGTG":41106, "GCGCA":54717, "GCGCT":53602, "GCGCC":79454, "GCGCG":55047, "GCGGA":70907, "GCGGT":72135, "GCGGC":95710, "GCGGG":74139, "GGAAA":96017, "GGAAT":67838, "GGAAC":77461, "GGAAG":665133, "GGATA":55685, "GGATT":74884, "GGATC":63000, "GGATG":79459, "GGACA":50842, "GGACT":38549, "GGACC":47670, "GGACG":47680, "GGAGA":160018, "GGAGT":41511, "GGAGC":68324, "GGAGG":104915, "GGTAA":32712, "GGTAT":36898, "GGTAC":25423, "GGTAG":60015, "GGTTA":37520, "GGTTT":99853, "GGTTC":80564, "GGTTG":110807, "GGTCA":59532, "GGTCT":68132, "GGTCC":48501, "GGTCG":66269, "GGTGA":73811, "GGTGT":53769, "GGTGC":64442, "GGTGG":117720, "GGCAA":85070, "GGCAT":62157, "GGCAC":46602, "GGCAG":101988, "GGCTA":41390, "GGCTT":90444, "GGCTC":64799, "GGCTG":98274, "GGCCA":81010, "GGCCT":66532, "GGCCC":54491, "GGCCG":77139, "GGCGA":92915, "GGCGT":55603, "GGCGC":75038, "GGCGG":120502, "GGGAA":67330, "GGGAT":63420, "GGGAC":39937, "GGGAG":79179, "GGGTA":33301, "GGGTT":90169, "GGGTC":53489, "GGGTG":68852, "GGGCA":67609, "GGGCT":65386, "GGGCC":51355, "GGGCG":70856, "GGGGA":66492, "GGGGT":65213, "GGGGC":61274, "GGGGG":111490 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1300895, "total_bases": 79354595, "q20_bases": 77215229, "q30_bases": 73860781, "total_cycles": 61, "quality_curves": { "A":[39.389,39.2267,39.0617,39.0656,39.1167,39.1788,39.1497,39.0058,39.1422,39.1177,39.131,39.1372,39.1585,39.1456,39.1146,39.1004,39.1355,39.1325,39.1624,39.1213,38.7917,39.0896,39.1289,39.1325,38.8255,39.1095,39.1264,38.7868,39.0244,38.9122,39.1138,39.1286,39.0591,39.1094,39.0272,39.0205,39.0653,39.0575,39.004,38.6484,38.7991,38.8289,38.7513,38.6322,38.4852,38.295,37.932,37.7122,37.8277,37.5164,37.2622,36.9845,36.8285,36.3637,36.2181,35.8391,35.5673,35.2924,35.0513,34.4764,34.2785], 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"CTTGA":72505, "CTTGT":62789, "CTTGC":67203, "CTTGG":80066, "CTCAA":64519, "CTCAT":53690, "CTCAC":42296, "CTCAG":52338, "CTCTA":28617, "CTCTT":78584, "CTCTC":62798, "CTCTG":56128, "CTCCA":86717, "CTCCT":133159, "CTCCC":80154, "CTCCG":72376, "CTCGA":59624, "CTCGT":50234, "CTCGC":59285, "CTCGG":61979, "CTGAA":67264, "CTGAT":58552, "CTGAC":43721, "CTGAG":48244, "CTGTA":22438, "CTGTT":69819, "CTGTC":44830, "CTGTG":42493, "CTGCA":59304, "CTGCT":111654, "CTGCC":86632, "CTGCG":56113, "CTGGA":77626, "CTGGT":77926, "CTGGC":82139, "CTGGG":71682, "CCAAA":97206, "CCAAT":59083, "CCAAC":96244, "CCAAG":78089, "CCATA":42321, "CCATT":61063, "CCATC":87050, "CCATG":58722, "CCACA":75315, "CCACT":44149, "CCACC":123826, "CCACG":58354, "CCAGA":78213, "CCAGT":59238, "CCAGC":107873, "CCAGG":70704, "CCTAA":28721, "CCTAT":35414, "CCTAC":33449, "CCTAG":23377, "CCTTA":28422, "CCTTT":83054, "CCTTC":105563, "CCTTG":81786, "CCTCA":71059, "CCTCT":68851, "CCTCC":128993, "CCTCG":73521, "CCTGA":66962, "CCTGT":64037, "CCTGC":113190, "CCTGG":76553, "CCCAA":92713, "CCCAT":60186, "CCCAC":82353, "CCCAG":77868, "CCCTA":28689, "CCCTT":60040, "CCCTC":67525, "CCCTG":66390, "CCCCA":86939, "CCCCT":59009, "CCCCC":61374, "CCCCG":65545, "CCCGA":60495, "CCCGT":42403, "CCCGC":79021, "CCCGG":62778, "CCGAA":71301, "CCGAT":60214, "CCGAC":57473, "CCGAG":58001, "CCGTA":27678, "CCGTT":49703, "CCGTC":61218, "CCGTG":45974, "CCGCA":63347, "CCGCT":63559, "CCGCC":127714, "CCGCG":60213, "CCGGA":59935, "CCGGT":60211, "CCGGC":85309, "CCGGG":59457, "CGAAA":67807, "CGAAT":44859, "CGAAC":50730, "CGAAG":71371, "CGATA":37192, "CGATT":53378, "CGATC":63753, "CGATG":74619, "CGACA":47449, "CGACT":39225, "CGACC":61421, "CGACG":58426, "CGAGA":58409, "CGAGT":32624, "CGAGC":51684, "CGAGG":60328, "CGTAA":22559, "CGTAT":22856, "CGTAC":18705, "CGTAG":28009, "CGTTA":18621, "CGTTT":48909, "CGTTC":52495, "CGTTG":51065, "CGTCA":47054, "CGTCT":48551, "CGTCC":48193, "CGTCG":60232, "CGTGA":38603, "CGTGT":24872, "CGTGC":34096, "CGTGG":53761, "CGCAA":48628, "CGCAT":38545, "CGCAC":38939, "CGCAG":52317, "CGCTA":22122, "CGCTT":56267, "CGCTC":53086, "CGCTG":62735, "CGCCA":81580, "CGCCT":85607, "CGCCC":77484, "CGCCG":102140, "CGCGA":46631, "CGCGT":31640, "CGCGC":52979, "CGCGG":58168, "CGGAA":61065, "CGGAT":54385, "CGGAC":34528, "CGGAG":57933, "CGGTA":30639, "CGGTT":62011, "CGGTC":56989, "CGGTG":66667, "CGGCA":69561, "CGGCT":71445, "CGGCC":73656, "CGGCG":92224, "CGGGA":52414, "CGGGT":50497, "CGGGC":55291, "CGGGG":56494, "GAAAA":108189, "GAAAT":73983, "GAAAC":69790, "GAAAG":73661, "GAATA":44222, "GAATT":56760, "GAATC":58530, "GAATG":50948, "GAACA":64414, "GAACT":53846, "GAACC":72196, "GAACG":47643, "GAAGA":109916, "GAAGT":49767, "GAAGC":89446, "GAAGG":78984, "GATAA":46324, "GATAT":45497, "GATAC":30266, "GATAG":37593, "GATTA":35651, "GATTT":75446, "GATTC":62998, "GATTG":61326, "GATCA":66290, "GATCT":67406, "GATCC":59789, "GATCG":58570, "GATGA":88572, "GATGT":53995, "GATGC":58426, "GATGG":80943, "GACAA":58307, "GACAT":41730, "GACAC":31098, "GACAG":38864, "GACTA":22126, "GACTT":48166, "GACTC":32426, "GACTG":38648, "GACCA":61929, "GACCT":52290, "GACCC":52427, "GACCG":53502, "GACGA":65214, "GACGT":30509, "GACGC":42796, "GACGG":51990, "GAGAA":93448, "GAGAT":62727, "GAGAC":53161, "GAGAG":49452, "GAGTA":21977, "GAGTT":46789, "GAGTC":30116, "GAGTG":27127, "GAGCA":62959, "GAGCT":44108, "GAGCC":56276, "GAGCG":42674, "GAGGA":98777, "GAGGT":51352, "GAGGC":64767, "GAGGG":48487, "GTAAA":26371, "GTAAT":26155, "GTAAC":20155, "GTAAG":19013, "GTATA":14707, "GTATT":34324, "GTATC":29848, "GTATG":26147, "GTACA":19199, "GTACT":20678, "GTACC":23557, "GTACG":18613, "GTAGA":31839, "GTAGT":24525, "GTAGC":28542, "GTAGG":27354, "GTTAA":18597, "GTTAT":30443, "GTTAC":22616, "GTTAG":21099, "GTTTA":26719, "GTTTT":83819, "GTTTC":75925, "GTTTG":73653, "GTTCA":55521, "GTTCT":68192, "GTTCC":82233, "GTTCG":51122, "GTTGA":69104, "GTTGT":62827, "GTTGC":61440, "GTTGG":85288, "GTCAA":50425, "GTCAT":45070, "GTCAC":34021, "GTCAG":40065, "GTCTA":23055, "GTCTT":63647, "GTCTC":59720, "GTCTG":48110, "GTCCA":47926, "GTCCT":53201, "GTCCC":42425, "GTCCG":35152, "GTCGA":51281, "GTCGT":45983, "GTCGC":52082, "GTCGG":53999, "GTGAA":48233, "GTGAT":49494, "GTGAC":31328, "GTGAG":34638, "GTGTA":15682, "GTGTT":45149, "GTGTC":28323, "GTGTG":33855, "GTGCA":32047, "GTGCT":47171, "GTGCC":44347, "GTGCG":35004, "GTGGA":56870, "GTGGT":77789, "GTGGC":62805, "GTGGG":66615, "GCAAA":64304, "GCAAT":50674, "GCAAC":57620, "GCAAG":58067, "GCATA":29411, "GCATT":45279, "GCATC":57313, "GCATG":40849, "GCACA":36373, "GCACT":28542, "GCACC":63185, "GCACG":34298, "GCAGA":63837, "GCAGT":38191, "GCAGC":74169, "GCAGG":88433, "GCTAA":20351, "GCTAT":31485, "GCTAC":29454, "GCTAG":18691, "GCTTA":25360, "GCTTT":74675, "GCTTC":105921, "GCTTG":71265, "GCTCA":51180, "GCTCT":50950, "GCTCC":78511, "GCTCG":55104, "GCTGA":65324, "GCTGT":49509, "GCTGC":80001, "GCTGG":99899, "GCCAA":81336, "GCCAT":65965, "GCCAC":66801, "GCCAG":77678, "GCCTA":30950, "GCCTT":77194, "GCCTC":79671, "GCCTG":76888, "GCCCA":72802, "GCCCT":58692, "GCCCC":66751, "GCCCG":59594, "GCCGA":80607, "GCCGT":59619, "GCCGC":94104, "GCCGG":80101, "GCGAA":54388, "GCGAT":56054, "GCGAC":46903, "GCGAG":47586, "GCGTA":19271, "GCGTT":43153, "GCGTC":40137, "GCGTG":36024, "GCGCA":44213, "GCGCT":47607, "GCGCC":71635, "GCGCG":48422, "GCGGA":59318, "GCGGT":65118, "GCGGC":85173, "GCGGG":65547, "GGAAA":82842, "GGAAT":62186, "GGAAC":69833, "GGAAG":76656, "GGATA":44150, "GGATT":68772, "GGATC":56587, "GGATG":71173, "GGACA":42055, "GGACT":34965, "GGACC":42874, "GGACG":41821, "GGAGA":90861, "GGAGT":37429, "GGAGC":62229, "GGAGG":93100, "GGTAA":27856, "GGTAT":33974, "GGTAC":22775, "GGTAG":32162, "GGTTA":28296, "GGTTT":91315, "GGTTC":73530, "GGTTG":100792, "GGTCA":50383, "GGTCT":62242, "GGTCC":44581, "GGTCG":59273, "GGTGA":62887, "GGTGT":48693, "GGTGC":57760, "GGTGG":105913, "GGCAA":72345, "GGCAT":55920, "GGCAC":41973, "GGCAG":68998, "GGCTA":32293, "GGCTT":82942, "GGCTC":58840, "GGCTG":88016, "GGCCA":66652, "GGCCT":60493, "GGCCC":48960, "GGCCG":68696, "GGCGA":79396, "GGCGT":49585, "GGCGC":66360, "GGCGG":107561, "GGGAA":57107, "GGGAT":57056, "GGGAC":36180, "GGGAG":56849, "GGGTA":24281, "GGGTT":82399, "GGGTC":48558, "GGGTG":61264, "GGGCA":55133, "GGGCT":59409, "GGGCC":46687, "GGGCG":62822, "GGGGA":55368, "GGGGT":58300, "GGGGC":55451, "GGGGG":44880 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-19C_S104_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-19C_S104_R2_001.fastq.gz -o AM-AL-19C.trim.R1.fastq.gz -O AM-AL-19C.trim.R2.fastq.gz -m --merged_out AM-AL-19C.trim.merged.fastq.gz " }