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"CTCGC":58839, "CTCGG":61905, "CTGAA":238601, "CTGAT":53961, "CTGAC":43115, "CTGAG":55673, "CTGTA":23900, "CTGTT":67509, "CTGTC":43123, "CTGTG":41238, "CTGCA":62430, "CTGCT":114502, "CTGCC":91510, "CTGCG":57806, "CTGGA":81917, "CTGGT":75713, "CTGGC":83774, "CTGGG":75944, "CCAAA":99886, "CCAAT":56298, "CCAAC":107438, "CCAAG":92163, "CCATA":45351, "CCATT":55318, "CCATC":88973, "CCATG":59022, "CCACA":89570, "CCACT":44366, "CCACC":148079, "CCACG":64979, "CCAGA":146356, "CCAGT":130367, "CCAGC":119694, "CCAGG":75287, "CCTAA":29795, "CCTAT":32615, "CCTAC":35243, "CCTAG":40470, "CCTTA":31175, "CCTTT":72975, "CCTTC":101296, "CCTTG":78436, "CCTCA":74247, "CCTCT":66709, "CCTCC":138070, "CCTCG":73787, "CCTGA":68925, "CCTGT":65607, "CCTGC":123012, "CCTGG":78616, "CCCAA":102627, "CCCAT":60425, "CCCAC":99326, "CCCAG":102796, "CCCTA":35043, "CCCTT":56559, "CCCTC":72379, "CCCTG":69751, "CCCCA":105616, "CCCCT":62364, "CCCCC":73193, "CCCCG":73065, "CCCGA":67875, "CCCGT":43873, "CCCGC":87494, 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"CGGAT":53462, "CGGAC":35874, "CGGAG":76705, "CGGTA":35175, "CGGTT":58929, "CGGTC":56927, "CGGTG":66943, "CGGCA":77474, "CGGCT":71937, "CGGCC":79092, "CGGCG":98645, "CGGGA":57899, "CGGGT":49780, "CGGGC":58980, "CGGGG":59616, "GAAAA":96944, "GAAAT":66655, "GAAAC":67951, "GAAAG":78860, "GAATA":41416, "GAATT":48647, "GAATC":54101, "GAATG":46897, "GAACA":70200, "GAACT":193220, "GAACC":77078, "GAACG":48906, "GAAGA":585040, "GAAGT":45924, "GAAGC":93853, "GAAGG":79649, "GATAA":42424, "GATAT":39832, "GATAC":29179, "GATAG":53078, "GATTA":34123, "GATTT":64238, "GATTC":56525, "GATTG":56926, "GATCA":67925, "GATCT":61919, "GATCC":58719, "GATCG":603943, "GATGA":88115, "GATGT":49248, "GATGC":56115, "GATGG":79046, "GACAA":59073, "GACAT":40644, "GACAC":32655, "GACAG":53036, "GACTA":23756, "GACTT":44735, "GACTC":33045, "GACTG":38562, "GACCA":69633, "GACCT":52682, "GACCC":58746, "GACCG":57387, "GACGA":70154, "GACGT":30359, "GACGC":42871, "GACGG":53115, "GAGAA":93817, "GAGAT":183200, "GAGAC":55045, "GAGAG":58473, "GAGTA":22905, "GAGTT":43128, "GAGTC":29068, "GAGTG":26663, "GAGCA":444473, "GAGCT":43796, "GAGCC":60536, "GAGCG":45303, "GAGGA":109844, "GAGGT":50783, "GAGGC":69533, "GAGGG":50017, "GTAAA":23096, "GTAAT":27162, "GTAAC":19419, "GTAAG":20253, "GTATA":13999, "GTATT":29116, "GTATC":27108, "GTATG":23443, "GTACA":19306, "GTACT":19153, "GTACC":23336, "GTACG":18175, "GTAGA":79494, "GTAGT":22655, "GTAGC":27909, "GTAGG":26204, "GTTAA":16707, "GTTAT":26244, "GTTAC":20950, "GTTAG":32018, "GTTTA":25556, "GTTTT":69712, "GTTTC":68718, "GTTTG":65629, "GTTCA":54899, "GTTCT":61162, "GTTCC":83922, "GTTCG":49031, "GTTGA":67654, "GTTGT":56362, "GTTGC":58273, "GTTGG":80027, "GTCAA":49595, "GTCAT":42469, "GTCAC":75755, "GTCAG":47184, "GTCTA":24555, "GTCTT":57362, "GTCTC":55404, "GTCTG":256247, "GTCCA":49772, "GTCCT":51541, "GTCCC":43041, "GTCCG":34472, "GTCGA":52580, "GTCGT":42801, "GTCGC":48414, "GTCGG":52129, "GTGAA":48188, "GTGAT":46495, "GTGAC":31786, "GTGAG":40164, "GTGTA":22770, "GTGTT":41347, "GTGTC":26449, "GTGTG":32386, "GTGCA":32925, "GTGCT":46973, "GTGCC":44819, "GTGCG":35329, "GTGGA":59306, "GTGGT":73572, "GTGGC":61785, "GTGGG":66792, "GCAAA":63995, "GCAAT":46824, "GCAAC":62337, "GCAAG":67515, "GCATA":31119, "GCATT":40658, "GCATC":55443, "GCATG":40066, "GCACA":372444, "GCACT":28291, "GCACC":70464, "GCACG":35533, "GCAGA":118147, "GCAGT":35757, "GCAGC":80050, "GCAGG":97711, "GCTAA":19636, "GCTAT":29476, "GCTAC":29054, "GCTAG":33039, "GCTTA":26765, "GCTTT":66191, "GCTTC":104286, "GCTTG":67516, "GCTCA":53897, "GCTCT":48919, "GCTCC":81786, "GCTCG":56592, "GCTGA":65720, "GCTGT":47304, "GCTGC":82573, "GCTGG":103397, "GCCAA":87808, "GCCAT":64599, "GCCAC":74267, "GCCAG":105954, "GCCTA":36014, "GCCTT":74010, "GCCTC":81709, "GCCTG":81391, "GCCCA":85737, "GCCCT":61181, "GCCCC":75675, "GCCCG":65115, "GCCGA":87344, "GCCGT":57402, "GCCGC":101850, "GCCGG":86676, "GCGAA":57714, "GCGAT":55808, "GCGAC":51223, "GCGAG":60119, "GCGTA":21934, "GCGTT":40863, "GCGTC":39463, "GCGTG":48623, "GCGCA":49329, "GCGCT":47361, "GCGCC":76148, "GCGCG":50763, "GCGGA":67235, "GCGGT":64751, "GCGGC":91609, "GCGGG":69698, "GGAAA":80484, "GGAAT":56970, "GGAAC":75576, "GGAAG":551674, "GGATA":47460, "GGATT":61496, "GGATC":55195, "GGATG":70421, "GGACA":45801, "GGACT":34750, "GGACC":46312, "GGACG":45040, "GGAGA":143166, "GGAGT":36332, "GGAGC":66910, "GGAGG":103354, "GGTAA":27514, "GGTAT":30199, "GGTAC":22503, "GGTAG":49922, "GGTTA":30928, "GGTTT":81239, "GGTTC":71408, "GGTTG":96756, "GGTCA":52405, "GGTCT":58785, "GGTCC":44589, "GGTCG":55401, "GGTGA":65748, "GGTGT":46929, "GGTGC":58790, "GGTGG":103270, "GGCAA":75225, "GGCAT":53818, "GGCAC":44586, "GGCAG":92380, "GGCTA":36516, "GGCTT":79170, "GGCTC":59937, "GGCTG":90272, "GGCCA":76874, "GGCCT":61935, "GGCCC":53528, "GGCCG":73754, "GGCGA":88934, "GGCGT":48631, "GGCGC":70183, "GGCGG":115274, "GGGAA":59786, "GGGAT":55444, "GGGAC":37935, "GGGAG":71157, "GGGTA":27639, "GGGTT":76963, "GGGTC":47707, "GGGTG":62539, "GGGCA":62934, "GGGCT":60660, "GGGCC":48756, "GGGCG":66914, "GGGGA":59760, "GGGGT":57440, "GGGGC":59229, "GGGGG":70719 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 1124983, "total_bases": 68623963, "q20_bases": 66940621, "q30_bases": 64171195, "total_cycles": 61, "quality_curves": { "A":[39.283,39.2364,39.0488,39.0473,38.9415,38.9791,39.0849,38.8609,39.1151,39.0916,39.1148,39.097,39.1482,39.1355,39.1203,39.1272,39.1466,39.1231,39.1324,39.1267,38.9468,39.1077,39.1296,39.155,38.9567,39.1252,39.146,38.9608,39.1024,38.9805,39.0995,39.1388,39.0683,39.0194,39.0615,39.0115,39.0051,39.0198,38.9357,38.8376,38.8349,38.7155,38.7966,38.722,38.6028,38.3848,38.113,37.9717,37.9892,37.7022,37.4556,37.1416,36.9896,36.4692,36.2619,35.7983,35.5017,35.1653,34.7715,34.1015,33.7064], 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"CTTGT":52742, "CTTGC":58894, "CTTGG":69621, "CTCAA":56043, "CTCAT":45919, "CTCAC":39890, "CTCAG":46870, "CTCTA":23894, "CTCTT":64352, "CTCTC":53714, "CTCTG":49712, "CTCCA":81135, "CTCCT":123854, "CTCCC":72340, "CTCCG":68882, "CTCGA":54066, "CTCGT":44642, "CTCGC":53910, "CTCGG":56968, "CTGAA":56858, "CTGAT":49722, "CTGAC":39516, "CTGAG":43998, "CTGTA":19015, "CTGTT":61529, "CTGTC":39351, "CTGTG":37698, "CTGCA":53527, "CTGCT":105539, "CTGCC":84422, "CTGCG":53066, "CTGGA":71679, "CTGGT":70254, "CTGGC":77280, "CTGGG":67610, "CCAAA":87248, "CCAAT":51909, "CCAAC":97737, "CCAAG":72538, "CCATA":37468, "CCATT":51404, "CCATC":81659, "CCATG":54545, "CCACA":76448, "CCACT":40693, "CCACC":134373, "CCACG":58730, "CCAGA":72916, "CCAGT":54643, "CCAGC":109725, "CCAGG":68232, "CCTAA":25824, "CCTAT":29987, "CCTAC":31522, "CCTAG":21451, "CCTTA":23911, "CCTTT":67534, "CCTTC":92714, "CCTTG":72738, "CCTCA":64823, "CCTCT":60792, "CCTCC":126013, "CCTCG":67388, "CCTGA":60727, "CCTGT":60067, "CCTGC":113204, "CCTGG":73011, "CCCAA":89850, "CCCAT":55743, "CCCAC":89308, "CCCAG":77026, "CCCTA":27621, "CCCTT":51738, "CCCTC":64772, "CCCTG":64201, "CCCCA":89828, "CCCCT":56372, "CCCCC":62402, "CCCCG":66424, "CCCGA":58863, "CCCGT":39755, "CCCGC":79563, "CCCGG":62237, "CCGAA":66379, "CCGAT":53296, "CCGAC":57061, "CCGAG":56425, "CCGTA":23794, "CCGTT":43150, "CCGTC":56064, "CCGTG":42434, "CCGCA":61740, "CCGCT":59309, "CCGCC":130227, "CCGCG":59589, "CCGGA":57801, "CCGGT":56889, "CCGGC":84011, "CCGGG":57748, "CGAAA":59922, "CGAAT":38122, "CGAAC":47669, "CGAAG":66165, "CGATA":32853, "CGATT":45000, "CGATC":56216, "CGATG":67141, "CGACA":44585, "CGACT":35935, "CGACC":62535, "CGACG":55363, "CGAGA":54768, "CGAGT":29202, "CGAGC":50042, "CGAGG":58483, "CGTAA":18969, "CGTAT":18532, "CGTAC":16405, "CGTAG":24583, "CGTTA":15192, "CGTTT":39672, "CGTTC":46200, "CGTTG":43967, "CGTCA":42104, "CGTCT":41743, "CGTCC":44853, "CGTCG":54054, "CGTGA":34381, "CGTGT":21309, "CGTGC":31070, "CGTGG":50700, "CGCAA":44254, "CGCAT":33353, "CGCAC":38540, "CGCAG":49332, "CGCTA":19528, "CGCTT":49012, "CGCTC":49004, "CGCTG":56066, "CGCCA":79589, "CGCCT":81115, "CGCCC":78787, "CGCCG":96681, "CGCGA":43635, "CGCGT":29542, "CGCGC":49486, "CGCGG":55733, "CGGAA":56578, "CGGAT":48839, "CGGAC":32112, "CGGAG":56724, "CGGTA":27293, "CGGTT":54544, "CGGTC":52290, "CGGTG":61073, "CGGCA":64980, "CGGCT":66330, "CGGCC":73064, "CGGCG":88685, "CGGGA":49965, "CGGGT":45722, "CGGGC":53827, "CGGGG":53626, "GAAAA":87216, "GAAAT":61419, "GAAAC":62732, "GAAAG":62779, "GAATA":35912, "GAATT":45024, "GAATC":50220, "GAATG":43124, "GAACA":60952, "GAACT":47395, "GAACC":69849, "GAACG":44388, "GAAGA":95659, "GAAGT":42155, "GAAGC":85069, "GAAGG":72594, "GATAA":38153, "GATAT":36930, "GATAC":26807, "GATAG":33249, "GATTA":28970, "GATTT":59303, "GATTC":52162, "GATTG":52362, "GATCA":59205, "GATCT":56154, "GATCC":53680, "GATCG":50975, "GATGA":78279, "GATGT":45970, "GATGC":51665, "GATGG":72619, "GACAA":52929, "GACAT":36829, "GACAC":29564, "GACAG":36210, "GACTA":18953, "GACTT":41374, "GACTC":29968, "GACTG":35577, "GACCA":60630, "GACCT":48110, "GACCC":53546, "GACCG":52346, "GACGA":61713, "GACGT":27429, "GACGC":38846, "GACGG":48966, "GAGAA":83068, "GAGAT":55212, "GAGAC":50332, "GAGAG":44975, "GAGTA":18707, "GAGTT":39552, "GAGTC":26660, "GAGTG":24477, "GAGCA":60742, "GAGCT":40038, "GAGCC":55024, "GAGCG":41044, "GAGGA":96174, "GAGGT":46535, "GAGGC":63695, "GAGGG":45671, "GTAAA":20707, "GTAAT":21191, "GTAAC":17578, "GTAAG":15681, "GTATA":11774, "GTATT":26792, "GTATC":24865, "GTATG":21643, "GTACA":16581, "GTACT":17430, "GTACC":21415, "GTACG":16470, "GTAGA":27087, "GTAGT":20674, "GTAGC":25512, "GTAGG":24215, "GTTAA":14671, "GTTAT":24403, "GTTAC":19350, "GTTAG":17903, "GTTTA":20450, "GTTTT":64482, "GTTTC":62708, "GTTTG":60581, "GTTCA":48140, "GTTCT":56672, "GTTCC":76832, "GTTCG":44886, "GTTGA":60163, "GTTGT":51751, "GTTGC":53964, "GTTGG":74645, "GTCAA":43623, "GTCAT":39079, "GTCAC":30728, "GTCAG":34611, "GTCTA":18937, "GTCTT":52342, "GTCTC":52762, "GTCTG":41944, "GTCCA":43310, "GTCCT":47944, "GTCCC":40196, "GTCCG":32074, "GTCGA":45466, "GTCGT":39077, "GTCGC":44202, "GTCGG":47645, "GTGAA":42243, "GTGAT":42930, "GTGAC":28984, "GTGAG":31579, "GTGTA":13130, "GTGTT":37730, "GTGTC":23974, "GTGTG":29722, "GTGCA":28015, "GTGCT":42953, "GTGCC":41082, "GTGCG":32312, "GTGGA":51532, "GTGGT":67251, "GTGGC":57003, "GTGGG":61107, "GCAAA":55353, "GCAAT":43256, "GCAAC":56535, "GCAAG":51737, "GCATA":25303, "GCATT":37033, "GCATC":50924, "GCATG":36436, "GCACA":34532, "GCACT":25824, "GCACC":63942, "GCACG":31714, "GCAGA":57723, "GCAGT":33082, "GCAGC":73237, "GCAGG":88754, "GCTAA":16972, "GCTAT":26967, "GCTAC":26617, "GCTAG":16303, "GCTTA":20961, "GCTTT":61004, "GCTTC":96021, "GCTTG":62952, "GCTCA":46712, "GCTCT":44194, "GCTCC":75221, "GCTCG":51438, "GCTGA":58123, "GCTGT":42653, "GCTGC":75524, "GCTGG":94758, "GCCAA":76428, "GCCAT":60088, "GCCAC":67619, "GCCAG":75909, "GCCTA":28016, "GCCTT":68750, "GCCTC":75234, "GCCTG":74028, "GCCCA":73298, "GCCCT":56302, "GCCCC":68981, "GCCCG":58976, "GCCGA":75512, "GCCGT":52826, "GCCGC":92466, "GCCGG":78497, "GCGAA":49332, "GCGAT":50454, "GCGAC":46535, "GCGAG":45843, "GCGTA":16867, "GCGTT":37084, "GCGTC":36078, "GCGTG":33985, "GCGCA":41234, "GCGCT":42628, "GCGCC":69760, "GCGCG":45797, "GCGGA":56445, "GCGGT":59491, "GCGGC":83501, "GCGGG":63062, "GGAAA":70490, "GGAAT":52825, "GGAAC":68711, "GGAAG":70804, "GGATA":38341, "GGATT":57330, "GGATC":50280, "GGATG":64420, "GGACA":38384, "GGACT":31619, "GGACC":42261, "GGACG":40172, "GGAGA":84632, "GGAGT":33597, "GGAGC":61739, "GGAGG":93645, "GGTAA":23928, "GGTAT":27972, "GGTAC":20338, "GGTAG":28726, "GGTTA":24010, "GGTTT":75048, "GGTTC":65975, "GGTTG":89060, "GGTCA":44829, "GGTCT":54245, "GGTCC":41636, "GGTCG":50260, "GGTGA":57585, "GGTGT":43224, "GGTGC":53843, "GGTGG":94786, "GGCAA":65009, "GGCAT":49426, "GGCAC":40380, "GGCAG":66568, "GGCTA":28759, "GGCTT":73314, "GGCTC":54953, "GGCTG":82466, "GGCCA":64610, "GGCCT":57152, "GGCCC":49035, "GGCCG":66687, "GGCGA":76961, "GGCGT":44334, "GGCGC":63454, "GGCGG":104487, "GGGAA":51854, "GGGAT":50474, "GGGAC":34701, "GGGAG":53527, "GGGTA":21261, "GGGTT":71225, "GGGTC":43813, "GGGTG":56690, "GGGCA":52680, "GGGCT":55750, "GGGCC":44929, "GGGCG":60626, "GGGGA":50888, "GGGGT":52400, "GGGGC":54270, "GGGGG":41797 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-19B_S103_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-19B_S103_R2_001.fastq.gz -o AM-AL-19B.trim.R1.fastq.gz -O AM-AL-19B.trim.R2.fastq.gz -m --merged_out AM-AL-19B.trim.merged.fastq.gz " }