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"CTCGG":48074, "CTGAA":246773, "CTGAT":41411, "CTGAC":32355, "CTGAG":45975, "CTGTA":18352, "CTGTT":56705, "CTGTC":33095, "CTGTG":34866, "CTGCA":50062, "CTGCT":95614, "CTGCC":72284, "CTGCG":46248, "CTGGA":65011, "CTGGT":62845, "CTGGC":64267, "CTGGG":64430, "CCAAA":95460, "CCAAT":42791, "CCAAC":101979, "CCAAG":75319, "CCATA":36493, "CCATT":43005, "CCATC":72908, "CCATG":45083, "CCACA":83765, "CCACT":36510, "CCACC":142931, "CCACG":50381, "CCAGA":127156, "CCAGT":125182, "CCAGC":99914, "CCAGG":60390, "CCTAA":24050, "CCTAT":26226, "CCTAC":28063, "CCTAG":34789, "CCTTA":23976, "CCTTT":58633, "CCTTC":82552, "CCTTG":59328, "CCTCA":63587, "CCTCT":57060, "CCTCC":119408, "CCTCG":58983, "CCTGA":53937, "CCTGT":51774, "CCTGC":99479, "CCTGG":62147, "CCCAA":95937, "CCCAT":50327, "CCCAC":90925, "CCCAG":88931, "CCCTA":29716, "CCCTT":45543, "CCCTC":63270, "CCCTG":52425, "CCCCA":99608, "CCCCT":52202, "CCCCC":71249, "CCCCG":60001, "CCCGA":55501, "CCCGT":34485, "CCCGC":70352, "CCCGG":53593, "CCGAA":61277, 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"CGGAG":62445, "CGGTA":32862, "CGGTT":46691, "CGGTC":42433, "CGGTG":53600, "CGGCA":60539, "CGGCT":58836, "CGGCC":60265, "CGGCG":74615, "CGGGA":46092, "CGGGT":40238, "CGGGC":46772, "CGGGG":47622, "GAAAA":81973, "GAAAT":50926, "GAAAC":55847, "GAAAG":66505, "GAATA":34981, "GAATT":39342, "GAATC":43078, "GAATG":37965, "GAACA":57150, "GAACT":198229, "GAACC":61751, "GAACG":38176, "GAAGA":587239, "GAAGT":36921, "GAAGC":73837, "GAAGG":63986, "GATAA":33185, "GATAT":30741, "GATAC":22269, "GATAG":42684, "GATTA":27204, "GATTT":52637, "GATTC":45324, "GATTG":43825, "GATCA":50452, "GATCT":47997, "GATCC":45290, "GATCG":592188, "GATGA":68658, "GATGT":36905, "GATGC":43826, "GATGG":61759, "GACAA":47089, "GACAT":29149, "GACAC":27158, "GACAG":42220, "GACTA":18242, "GACTT":34587, "GACTC":25122, "GACTG":28500, "GACCA":54462, "GACCT":39023, "GACCC":47661, "GACCG":42647, "GACGA":54499, "GACGT":21708, "GACGC":32519, "GACGG":39452, "GAGAA":78269, "GAGAT":171462, "GAGAC":44687, "GAGAG":50431, "GAGTA":18165, "GAGTT":33388, "GAGTC":22595, "GAGTG":20681, "GAGCA":449281, "GAGCT":34898, "GAGCC":49060, "GAGCG":34461, "GAGGA":92496, "GAGGT":41318, "GAGGC":54857, "GAGGG":42251, "GTAAA":18309, "GTAAT":17002, "GTAAC":15387, "GTAAG":17103, "GTATA":11645, "GTATT":24671, "GTATC":25932, "GTATG":19570, "GTACA":15485, "GTACT":14857, "GTACC":17465, "GTACG":13896, "GTAGA":71519, "GTAGT":17746, "GTAGC":21528, "GTAGG":20943, "GTTAA":12976, "GTTAT":20608, "GTTAC":16914, "GTTAG":26661, "GTTTA":20797, "GTTTT":63090, "GTTTC":53977, "GTTTG":58737, "GTTCA":40334, "GTTCT":49974, "GTTCC":61173, "GTTCG":38297, "GTTGA":52119, "GTTGT":52500, "GTTGC":45922, "GTTGG":74763, "GTCAA":37180, "GTCAT":32827, "GTCAC":71655, "GTCAG":35992, "GTCTA":19859, "GTCTT":47832, "GTCTC":45973, "GTCTG":270034, "GTCCA":38032, "GTCCT":40541, "GTCCC":32138, "GTCCG":26045, "GTCGA":40931, "GTCGT":34608, "GTCGC":36691, "GTCGG":39057, "GTGAA":39782, "GTGAT":36536, "GTGAC":22349, "GTGAG":33592, "GTGTA":13344, "GTGTT":37164, "GTGTC":22202, "GTGTG":33163, "GTGCA":25859, "GTGCT":37721, "GTGCC":34392, "GTGCG":28125, "GTGGA":47793, "GTGGT":69890, "GTGGC":50830, "GTGGG":58864, "GCAAA":50312, "GCAAT":34456, "GCAAC":49522, "GCAAG":52091, "GCATA":24375, "GCATT":31109, "GCATC":42680, "GCATG":29798, "GCACA":389351, "GCACT":20592, "GCACC":57903, "GCACG":26664, "GCAGA":103792, "GCAGT":26748, "GCAGC":63888, "GCAGG":79797, "GCTAA":15554, "GCTAT":22829, "GCTAC":23389, "GCTAG":28596, "GCTTA":22549, "GCTTT":52643, "GCTTC":82837, "GCTTG":55191, "GCTCA":40984, "GCTCT":40006, "GCTCC":64883, "GCTCG":42629, "GCTGA":53062, "GCTGT":40659, "GCTGC":66445, "GCTGG":86668, "GCCAA":70120, "GCCAT":48134, "GCCAC":62993, "GCCAG":82900, "GCCTA":28865, "GCCTT":55238, "GCCTC":65694, "GCCTG":65037, "GCCCA":69709, "GCCCT":48675, "GCCCC":61864, "GCCCG":50894, "GCCGA":67476, "GCCGT":44591, "GCCGC":78655, "GCCGG":68759, "GCGAA":46951, "GCGAT":41403, "GCGAC":38436, "GCGAG":46772, "GCGTA":17589, "GCGTT":31702, "GCGTC":30533, "GCGTG":28794, "GCGCA":38178, "GCGCT":36620, "GCGCC":56729, "GCGCG":38215, "GCGGA":53204, "GCGGT":59110, "GCGGC":70950, "GCGGG":56259, "GGAAA":67609, "GGAAT":46287, "GGAAC":56784, "GGAAG":548648, "GGATA":37059, "GGATT":49815, "GGATC":42616, "GGATG":55816, "GGACA":35855, "GGACT":25582, "GGACC":34069, "GGACG":33685, "GGAGA":126461, "GGAGT":27406, "GGAGC":53217, "GGAGG":87594, "GGTAA":20812, "GGTAT":29734, "GGTAC":16886, "GGTAG":43793, "GGTTA":25487, "GGTTT":73347, "GGTTC":54487, "GGTTG":85894, "GGTCA":38792, "GGTCT":48484, "GGTCC":33813, "GGTCG":42885, "GGTGA":54434, "GGTGT":44657, "GGTGC":47308, "GGTGG":96527, "GGCAA":56826, "GGCAT":40868, "GGCAC":33719, "GGCAG":77280, "GGCTA":29603, "GGCTT":66689, "GGCTC":47346, "GGCTG":76375, "GGCCA":56848, "GGCCT":47492, "GGCCC":40963, "GGCCG":56080, "GGCGA":69454, "GGCGT":38328, "GGCGC":52404, "GGCGG":93957, "GGGAA":48340, "GGGAT":44642, "GGGAC":28722, "GGGAG":60312, "GGGTA":24011, "GGGTT":68585, "GGGTC":38788, "GGGTG":55216, "GGGCA":50326, "GGGCT":50827, "GGGCC":37154, "GGGCG":54396, "GGGGA":50099, "GGGGT":52053, "GGGGC":48560, "GGGGG":69762 }, "overrepresented_sequences": { } }, "read2_before_filtering": { "total_reads": 950356, "total_bases": 57971716, "q20_bases": 56365108, "q30_bases": 53853661, "total_cycles": 61, "quality_curves": { "A":[39.3607,39.2026,39.0804,39.0294,38.9193,39.1522,39.085,38.9453,39.1119,39.0956,39.1151,39.1275,39.1321,39.1272,39.0965,39.1004,39.1113,39.1355,39.1214,39.0827,38.8483,39.0924,39.1097,39.1268,38.8859,39.1121,39.113,38.858,39.0866,38.8842,39.0989,39.1173,39.0558,39.0302,39.0915,38.9967,38.8874,39.0308,38.8591,38.7668,38.9037,38.7258,38.7519,38.6015,38.4345,38.203,37.8747,37.6353,37.6427,37.2854,37.0056,36.6519,36.386,35.9234,35.6613,35.1783,34.928,34.519,34.1538,33.5778,33.1987], 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"CTTGT":42323, "CTTGC":44426, "CTTGG":54350, "CTCAA":44915, "CTCAT":35192, "CTCAC":31758, "CTCAG":36076, "CTCTA":18575, "CTCTT":53543, "CTCTC":44967, "CTCTG":40650, "CTCCA":66532, "CTCCT":104169, "CTCCC":59449, "CTCCG":51320, "CTCGA":40962, "CTCGT":35227, "CTCGC":40460, "CTCGG":42720, "CTGAA":43523, "CTGAT":37013, "CTGAC":28533, "CTGAG":35142, "CTGTA":13648, "CTGTT":50848, "CTGTC":29742, "CTGTG":31073, "CTGCA":41638, "CTGCT":86643, "CTGCC":64956, "CTGCG":41000, "CTGGA":55256, "CTGGT":56528, "CTGGC":57094, "CTGGG":54579, "CCAAA":83113, "CCAAT":38757, "CCAAC":92105, "CCAAG":56614, "CCATA":28904, "CCATT":39020, "CCATC":64858, "CCATG":40311, "CCACA":70864, "CCACT":32723, "CCACC":127032, "CCACG":44317, "CCAGA":57435, "CCAGT":40333, "CCAGC":88604, "CCAGG":53133, "CCTAA":20196, "CCTAT":23597, "CCTAC":24400, "CCTAG":17047, "CCTTA":17121, "CCTTT":53285, "CCTTC":73611, "CCTTG":53481, "CCTCA":53999, "CCTCT":50870, "CCTCC":106168, "CCTCG":52580, "CCTGA":45860, "CCTGT":46438, "CCTGC":89586, "CCTGG":55373, "CCCAA":82755, "CCCAT":45079, "CCCAC":79944, "CCCAG":63819, "CCCTA":22670, "CCCTT":40347, "CCCTC":54602, "CCCTG":46826, "CCCCA":82810, "CCCCT":45414, "CCCCC":57213, "CCCCG":52573, "CCCGA":46287, "CCCGT":29929, "CCCGC":61768, "CCCGG":47434, "CCGAA":50612, "CCGAT":38717, "CCGAC":42110, "CCGAG":43356, "CCGTA":19242, "CCGTT":32640, "CCGTC":41409, "CCGTG":30285, "CCGCA":46192, "CCGCT":44519, "CCGCC":102636, "CCGCG":43029, "CCGGA":43312, "CCGGT":41777, "CCGGC":63957, "CCGGG":43958, "CGAAA":45611, "CGAAT":29794, "CGAAC":37776, "CGAAG":50799, "CGATA":23742, "CGATT":33576, "CGATC":41415, "CGATG":47897, "CGACA":33564, "CGACT":26564, "CGACC":46390, "CGACG":39456, "CGAGA":42062, "CGAGT":22527, "CGAGC":38068, "CGAGG":44290, "CGTAA":15547, "CGTAT":15599, "CGTAC":12949, "CGTAG":17711, "CGTTA":11211, "CGTTT":31254, "CGTTC":34167, "CGTTG":33764, "CGTCA":30888, "CGTCT":33466, "CGTCC":33059, "CGTCG":38998, "CGTGA":25011, "CGTGT":16693, "CGTGC":22822, "CGTGG":36835, "CGCAA":34041, "CGCAT":23718, "CGCAC":28852, "CGCAG":36550, "CGCTA":14132, "CGCTT":37127, "CGCTC":35561, "CGCTG":43073, "CGCCA":61582, "CGCCT":61972, "CGCCC":61195, "CGCCG":71800, "CGCGA":31754, "CGCGT":20733, "CGCGC":35944, "CGCGG":40604, "CGGAA":42996, "CGGAT":33997, "CGGAC":23673, "CGGAG":42899, "CGGTA":20526, "CGGTT":42371, "CGGTC":37765, "CGGTG":47287, "CGGCA":47940, "CGGCT":52711, "CGGCC":52871, "CGGCG":64498, "CGGGA":38081, "CGGGT":35936, "CGGGC":40818, "CGGGG":41768, "GAAAA":72432, "GAAAT":46262, "GAAAC":50653, "GAAAG":50193, "GAATA":29119, "GAATT":35626, "GAATC":39115, "GAATG":34480, "GAACA":47705, "GAACT":34594, "GAACC":55004, "GAACG":33643, "GAAGA":81515, "GAAGT":33179, "GAAGC":65760, "GAAGG":57005, "GATAA":29149, "GATAT":28004, "GATAC":20083, "GATAG":23694, "GATTA":22280, "GATTT":47755, "GATTC":40817, "GATTG":39435, "GATCA":42418, "GATCT":42758, "GATCC":40387, "GATCG":38228, "GATGA":59786, "GATGT":33219, "GATGC":39062, "GATGG":55618, "GACAA":40857, "GACAT":25601, "GACAC":23406, "GACAG":26615, "GACTA":13603, "GACTT":31454, "GACTC":22071, "GACTG":25170, "GACCA":45401, "GACCT":34462, "GACCC":41957, "GACCG":37650, "GACGA":46338, "GACGT":19230, "GACGC":28176, "GACGG":35313, "GAGAA":67996, "GAGAT":43486, "GAGAC":39315, "GAGAG":36087, "GAGTA":13833, "GAGTT":30040, "GAGTC":20364, "GAGTG":18513, "GAGCA":44781, "GAGCT":30864, "GAGCC":43157, "GAGCG":29950, "GAGGA":78616, "GAGGT":36715, "GAGGC":48690, "GAGGG":37267, "GTAAA":15984, "GTAAT":15292, "GTAAC":13524, "GTAAG":12077, "GTATA":9243, "GTATT":22437, "GTATC":20056, "GTATG":17455, "GTACA":12297, "GTACT":13200, "GTACC":15588, "GTACG":12270, "GTAGA":20442, "GTAGT":15877, "GTAGC":19243, "GTAGG":18800, "GTTAA":11109, "GTTAT":18676, "GTTAC":15069, "GTTAG":13101, "GTTTA":15859, "GTTTT":57006, "GTTTC":48702, "GTTTG":53250, "GTTCA":34415, "GTTCT":45369, "GTTCC":55481, "GTTCG":34305, "GTTGA":45120, "GTTGT":47517, "GTTGC":41296, "GTTGG":68014, "GTCAA":31809, "GTCAT":29501, "GTCAC":21612, "GTCAG":24511, "GTCTA":14768, "GTCTT":43242, "GTCTC":43065, "GTCTG":31736, "GTCCA":32107, "GTCCT":36436, "GTCCC":29289, "GTCCG":22980, "GTCGA":34219, "GTCGT":30857, "GTCGC":32557, "GTCGG":34479, "GTGAA":33255, "GTGAT":32500, "GTGAC":19817, "GTGAG":24653, "GTGTA":10077, "GTGTT":33415, "GTGTC":19665, "GTGTG":29655, "GTGCA":21380, "GTGCT":33467, "GTGCC":30745, "GTGCG":24545, "GTGGA":39747, "GTGGT":63022, "GTGGC":45775, "GTGGG":52472, "GCAAA":42112, "GCAAT":31177, "GCAAC":43921, "GCAAG":37932, "GCATA":19087, "GCATT":27781, "GCATC":37910, "GCATG":26723, "GCACA":27758, "GCACT":17846, "GCACC":50960, "GCACG":22830, "GCAGA":44869, "GCAGT":23709, "GCAGC":56374, "GCAGG":69364, "GCTAA":13014, "GCTAT":20378, "GCTAC":20887, "GCTAG":12527, "GCTTA":16568, "GCTTT":47505, "GCTTC":74910, "GCTTG":50344, "GCTCA":34170, "GCTCT":35117, "GCTCC":58440, "GCTCG":37440, "GCTGA":45194, "GCTGT":36067, "GCTGC":59415, "GCTGG":77082, "GCCAA":59863, "GCCAT":43415, "GCCAC":55723, "GCCAG":55438, "GCCTA":21287, "GCCTT":49794, "GCCTC":59038, "GCCTG":57455, "GCCCA":57434, "GCCCT":43033, "GCCCC":54709, "GCCCG":44416, "GCCGA":55715, "GCCGT":39829, "GCCGC":68809, "GCCGG":60084, "GCGAA":38075, "GCGAT":36521, "GCGAC":33708, "GCGAG":33133, "GCGTA":12560, "GCGTT":28147, "GCGTC":26755, "GCGTG":25183, "GCGCA":29978, "GCGCT":31848, "GCGCC":50119, "GCGCG":32652, "GCGGA":42186, "GCGGT":47217, "GCGGC":61946, "GCGGG":48979, "GGAAA":57880, "GGAAT":42280, "GGAAC":50726, "GGAAG":55501, "GGATA":28779, "GGATT":45332, "GGATC":37988, "GGATG":49885, "GGACA":28961, "GGACT":22747, "GGACC":30387, "GGACG":29446, "GGAGA":68722, "GGAGT":24581, "GGAGC":46871, "GGAGG":76609, "GGTAA":17332, "GGTAT":23063, "GGTAC":14943, "GGTAG":23055, "GGTTA":18788, "GGTTT":66568, "GGTTC":49360, "GGTTG":77771, "GGTCA":31613, "GGTCT":43863, "GGTCC":30425, "GGTCG":38080, "GGTGA":45513, "GGTGT":39984, "GGTGC":42031, "GGTGG":86543, "GGCAA":47778, "GGCAT":36728, "GGCAC":29646, "GGCAG":50901, "GGCTA":21794, "GGCTT":60461, "GGCTC":42196, "GGCTG":68116, "GGCCA":45344, "GGCCT":42320, "GGCCC":36089, "GGCCG":48526, "GGCGA":57188, "GGCGT":33894, "GGCGC":45492, "GGCGG":81767, "GGGAA":40385, "GGGAT":40364, "GGGAC":25434, "GGGAG":42476, "GGGTA":17443, "GGGTT":62253, "GGGTC":34832, "GGGTG":48645, "GGGCA":40208, "GGGCT":45599, "GGGCC":32769, "GGGCG":47295, "GGGGA":41345, "GGGGT":46017, "GGGGC":42691, "GGGGG":36504 }, "overrepresented_sequences": { } }, "command": "/redser4/software/fastp -l 30 -q 25 -y -Y 30 --detect_adapter_for_pe -i /scratch3/cwanket/andy-lake/raw/AM-AL-18C_S101_R1_001.fastq.gz -I /scratch3/cwanket/andy-lake/raw/AM-AL-18C_S101_R2_001.fastq.gz -o AM-AL-18C.trim.R1.fastq.gz -O AM-AL-18C.trim.R2.fastq.gz -m --merged_out AM-AL-18C.trim.merged.fastq.gz " }